mRNA_P-wetherbeei_contig8089.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8089.1.1
Unique NamemRNA_P-wetherbeei_contig8089.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8089.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8089contigP-wetherbeei_contig8089:13..2356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1824
Hectar predicted targeting categoryother localisation
Exons4
Cds size1020
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8089.1.1prot_P-wetherbeei_contig8089.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8089 490..2029 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187019.2867203-UTR-P-wetherbeei_contig8089:12..4891683187019.2867203-UTR-P-wetherbeei_contig8089:12..489Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8089 13..489 +
1683187019.3390915-UTR-P-wetherbeei_contig8089:2029..23561683187019.3390915-UTR-P-wetherbeei_contig8089:2029..2356Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8089 2030..2356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187019.2971294-CDS-P-wetherbeei_contig8089:489..5971683187019.2971294-CDS-P-wetherbeei_contig8089:489..597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8089 490..597 +
1683187019.3075707-CDS-P-wetherbeei_contig8089:883..10321683187019.3075707-CDS-P-wetherbeei_contig8089:883..1032Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8089 884..1032 +
1683187019.3178294-CDS-P-wetherbeei_contig8089:1044..10991683187019.3178294-CDS-P-wetherbeei_contig8089:1044..1099Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8089 1045..1099 +
1683187019.328134-CDS-P-wetherbeei_contig8089:1321..20291683187019.328134-CDS-P-wetherbeei_contig8089:1321..2029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8089 1322..2029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8089.1.1

>prot_P-wetherbeei_contig8089.1.1 ID=prot_P-wetherbeei_contig8089.1.1|Name=mRNA_P-wetherbeei_contig8089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=340bp
MKAYAANSVLALVNGQLAQRHRGKSEIVTVSSKVGDVAAAAAFRALPTAG
RAAVGAMATKKIARRMTYLSQRSFTIASVATDAAMNASSPKKKRLELYTS
AVEQMFAETALMRAHQKLLKGQTGGGGNGGEGGENSSTDDVGESSSSNGD
SGDSGGGADHDRGGDGSRRGDNSSADDGGESSTGGAGGGESSGGGGGRGG
GSSSGNGGRSSGGSSGGGNGAPAVDAAMLRMEHLYLPGDLTKATLLLGDE
LVRKLILQTGVWLEEAESAAGKPLTAEEARATLRTPPDLNGFANVLWSGF
ETVAERCGVFPKPLPNPSGAPVTLQDAKQLFAPYLLRRK*
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mRNA from alignment at P-wetherbeei_contig8089:13..2356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8089.1.1 ID=mRNA_P-wetherbeei_contig8089.1.1|Name=mRNA_P-wetherbeei_contig8089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2344bp|location=Sequence derived from alignment at P-wetherbeei_contig8089:13..2356+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGCTGGTATCGTCGGAAAACGACGCCTTGGCCCCGCCAATGCTGCGTG
GCGCCGCCAGCGGCGCGGGATACAGGTCTGCCGCGGACCGCGCCGTCCAG
GAGGAGGCCAAGAAGGTCATCCGCAAGTTCAACAAGCTGGGCGCCGCCGC
CAAGGCGCTCGTGCTTGTGCATGCCATGGGCCAGATGGCCGTTAGCATGG
AGATCGCCGCTGCTGGTGTCAACGGCCTGGTGGCGGCCGGAGGGTCGCGC
GGCCGCGTGGCGGAGACGAGGGCGACGGATGGAGTCGGGGCCCTCTTCGG
GCACGTCTCGCGCATGATGCTGCACCACTCCTTTGCGCTCGTCCGAACCG
AAAACGCCGTCGCGCGCAAGGGCGGCAGCGGATCTGGCGGCTTTAAAGCA
GTCGCGCCCGCAAAAAAGCGGCTGCCGCTGGAGACGGCGCCGACCGCGAC
GACGGCACCGACGGCGCAAGGCGGGCAATGAAGGCCTATGCAGCGAATTC
CGTGCTGGCGCTGGTGAACGGGCAGCTGGCGCAGCGACACCGCGGGAAGA
GTGAGATCGTCACCGTCTCGAGCAAAGTCGGCGATGGTAAGTTCTTGTTT
TGCTTTGTCTAATCTTCTGTTTCATGAAATATGTATTTGCACCCATTATG
GTCAGCCAGTACGTGCGAATTCAATTCTCCATTTGTTCTTCTTTTTCTTT
TCCTTTTCCACACGGATATTTGTCAATTTTCGCTTTTTCTGGCAGAGAAG
CTGTCCACGAACCTCAACACCAACCGCTCGATGTTTCTCAAGGCGCTCGC
TGCGCATGCTGGCGATATGGTCCTCAAAACCATTGCGGATCCGGCGGTTG
CTGCCGCTGCCAATGCTGGCGGTGGCGGCGGCGGCGGCGTTTCGGGCACT
TCCAACGGCAGGGAGGGCGGCAGTGGGGGCGATGGCGACAAAGAAGATAG
CCAGGAGGATGACTTACTTGAGCCAACGTTCCTTCACAATTGCCTCGGTG
GCGACTGATGCGGCCATGAAGCTGCTTGGGAGCGCCAGCTCGCCAAAGAA
GAAGCGTCTAGAACTGTACACTTCTGCAGTCGAACAGGTGAATCAAGAAT
GCTCCTGTGTTTTGGGTATCTATTGTGGTTGCTGCTTCTTTTTTCCTGCT
TTTAAGTCTTCTTCGAAGTCTGTGTTTTCCGAAGCCTTCTTTTCAATAAT
TCACGTTTAGCTTGAAAATGTTGATGTGAAGAAGTTAAGGCTAGTACGGA
TAAAACACAGATTCATCCGTTGTGTTGTTCTCTTCATGCGGCCTGCCGAT
TGCGTGCAGATGTTTGCCGAGACAGCGCTGATGCGGGCCCACCAGAAGCT
GCTCAAGGGGCAGACCGGCGGCGGTGGCAACGGCGGCGAGGGCGGCGAGA
ACAGCAGCACAGACGATGTCGGGGAGAGCAGCAGCAGTAACGGCGACAGC
GGCGACAGCGGCGGTGGGGCTGACCACGACCGCGGCGGCGACGGCAGCCG
CCGCGGCGATAACAGCAGCGCGGATGATGGCGGTGAGAGCAGCACCGGAG
GCGCAGGCGGCGGTGAGAGCAGCGGCGGCGGCGGGGGCCGTGGTGGCGGC
AGCAGCAGCGGCAACGGCGGTAGGAGCAGCGGCGGCAGTTCCGGAGGCGG
CAACGGCGCCCCCGCAGTGGATGCGGCGATGCTGCGCATGGAACATCTCT
ACCTGCCAGGTGACCTGACGAAGGCAACGCTCCTTCTCGGGGATGAGCTT
GTGCGGAAGCTCATCCTCCAGACCGGGGTCTGGCTGGAAGAGGCGGAAAG
TGCTGCGGGCAAGCCCCTGACGGCGGAAGAAGCCCGGGCGACTCTGCGCA
CGCCGCCGGATTTGAACGGATTTGCCAACGTGCTGTGGTCTGGGTTTGAA
ACTGTGGCAGAGCGCTGCGGCGTTTTCCCGAAGCCTCTTCCAAACCCGAG
TGGCGCCCCAGTGACTCTGCAGGACGCGAAGCAGTTGTTTGCTCCGTACC
TGCTCCGCCGCAAGTAGGCGACCCGCGCGCCTTGGCTGGTGAGTGGACGG
CGACACACCGAGGGCGGCATGGTGGGCGGGATTGGCGGCCGAGGGTCGAG
ACGTGGCGTGAGAGAGACAAGCCGCGCGAAAGCCGCAGTTTTTGCGGTGG
TACAGGCGTGCGGCGGTGAAGACGCGGCGCTGCGTCCAGCGCAGGCGCGT
GAATGAGAGCGCGTGATGGACCTCGCGGGTGATGACATTTTTGGTCAGGA
ACGGCGGGGCGTGGCAAGTGGAAGGGTGGAGAGAAGAAGCTGGTAGTGAA
GACCGAAGGCAAGGCATCGTCAATTGCTTTGAAGAAAAATCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8089:13..2356+

>mRNA_P-wetherbeei_contig8089.1.1 ID=mRNA_P-wetherbeei_contig8089.1.1|Name=mRNA_P-wetherbeei_contig8089.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1020bp|location=Sequence derived from alignment at P-wetherbeei_contig8089:13..2356+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGCCTATGCAGCGAATTCCGTGCTGGCGCTGGTGAACGGGCAGCT
GGCGCAGCGACACCGCGGGAAGAGTGAGATCGTCACCGTCTCGAGCAAAG
TCGGCGATGTGGCGGCGGCGGCGGCGTTTCGGGCACTTCCAACGGCAGGG
AGGGCGGCAGTGGGGGCGATGGCGACAAAGAAGATAGCCAGGAGGATGAC
TTACTTGAGCCAACGTTCCTTCACAATTGCCTCGGTGGCGACTGATGCGG
CCATGAACGCCAGCTCGCCAAAGAAGAAGCGTCTAGAACTGTACACTTCT
GCAGTCGAACAGATGTTTGCCGAGACAGCGCTGATGCGGGCCCACCAGAA
GCTGCTCAAGGGGCAGACCGGCGGCGGTGGCAACGGCGGCGAGGGCGGCG
AGAACAGCAGCACAGACGATGTCGGGGAGAGCAGCAGCAGTAACGGCGAC
AGCGGCGACAGCGGCGGTGGGGCTGACCACGACCGCGGCGGCGACGGCAG
CCGCCGCGGCGATAACAGCAGCGCGGATGATGGCGGTGAGAGCAGCACCG
GAGGCGCAGGCGGCGGTGAGAGCAGCGGCGGCGGCGGGGGCCGTGGTGGC
GGCAGCAGCAGCGGCAACGGCGGTAGGAGCAGCGGCGGCAGTTCCGGAGG
CGGCAACGGCGCCCCCGCAGTGGATGCGGCGATGCTGCGCATGGAACATC
TCTACCTGCCAGGTGACCTGACGAAGGCAACGCTCCTTCTCGGGGATGAG
CTTGTGCGGAAGCTCATCCTCCAGACCGGGGTCTGGCTGGAAGAGGCGGA
AAGTGCTGCGGGCAAGCCCCTGACGGCGGAAGAAGCCCGGGCGACTCTGC
GCACGCCGCCGGATTTGAACGGATTTGCCAACGTGCTGTGGTCTGGGTTT
GAAACTGTGGCAGAGCGCTGCGGCGTTTTCCCGAAGCCTCTTCCAAACCC
GAGTGGCGCCCCAGTGACTCTGCAGGACGCGAAGCAGTTGTTTGCTCCGT
ACCTGCTCCGCCGCAAGTAG
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