mRNA_P-wetherbeei_contig808.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig808.1.1
Unique NamemRNA_P-wetherbeei_contig808.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig808.1.1 vs. uniprot
Match: D8LR56_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR56_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.600e-22
Identity = 161/433 (37.18%), Postives = 207/433 (47.81%), Query Frame = 1 
Query:  379 GDVYSGGCGPCSGDPLTPCCSGHGRLRWHGGDQLEANFVNGGVADGSKAVLRYRNGAIYFGQFRGGVPEGPGVVYLSSSGHSSGA-AELDDLSAEIMWYKXXXXXXXXXXXXLVKWRDAA-----------------RARFPVGASGXXXXXXXXXXXXQKEAELGLMAVRAG---------------------------FDNPFDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSDAAVEMNAETAAGASAAGVADTVSTPSHAARRTADVEAEASPLCESSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAFRHGGMVRNDPRNLRLAALKFGRAEVRRLLKQQQQAEEALQRLRSTALCLICNGVEMNALLLRCAHRCTCVTCAALISDCPLCGKPIGGKIVRIYTT 1542
            G++Y GGCGP + DP  P  SG GRLR   G Q++  F  G   DG+K V+R+RNGAI+FG+ +   P G      SS     G+ AEL +++ +++WYK            ++K++D A                 R     G  G            + + E G    + G                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               GA   G  +  +T + AARR     A+ S                            XXXXXXXXXXXXX       E  F  G MVR+D  +LRLAAL+FGRAE+RRL    ++ E+A+ RLR   LCL+CN  EMNALL+ C H+  C+ CA+    CP+C + IG K+VR Y+T
Sbjct:  479 GELYQGGCGPSAADPAMPVRSGQGRLRRRDGGQVDTRFRAGRAVDGAKGVVRFRNGAIFFGELQEARPHG-----RSSRRKPRGSLAELHEMARDVLWYKGDFRLGKPHGSGVIKYKDPAPSLPADRGVGGAVAEEERGGAGAGPPGRPRVRASCESKDEYDGEGGEPEAKQGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGALPEGGEEKAAT-ALAARRGQRAPADGS----------------------------XXXXXXXXXXXXXSGADMEYEAEFVDGVMVRHDAEHLRLAALRFGRAEIRRLETLLKKEEDAMSRLRVKGLCLLCNVEEMNALLVACRHKVLCMGCASRADRCPVCNETIG-KVVRTYST 876
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig808.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR56_ECTSI3.600e-2237.18Phosphatidylinositol-4-phosphate 5-kinase, putativ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig808contigP-wetherbeei_contig808:517..3725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36651.K9G6X4
PFAMsMORN,UCH,USP7_ICP0_bdg,zf-C3HC4_3
Model size2503
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.52e-06
EggNOG OGsCOG5077@1|root,COG5253@1|root,KOG1571@1|root,KOG0229@2759|Eukaryota,KOG1571@2759|Eukaryota,KOG1863@2759|Eukaryota,39JI6@33154|Opisthokonta,3P1HH@4751|Fungi,3QRSI@4890|Ascomycota,20E98@147545|Eurotiomycetes,3S603@5042|Eurotiales
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-06_004280.1
DescriptionMATH and UCH domain protein
Cds size1182
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig808.1.1prot_P-wetherbeei_contig808.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig808 880..2767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187018.6726024-UTR-P-wetherbeei_contig808:516..8791683187018.6726024-UTR-P-wetherbeei_contig808:516..879Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig808 517..879 +
1683187018.7382498-UTR-P-wetherbeei_contig808:2767..37251683187018.7382498-UTR-P-wetherbeei_contig808:2767..3725Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig808 2768..3725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187018.6853065-CDS-P-wetherbeei_contig808:879..11011683187018.6853065-CDS-P-wetherbeei_contig808:879..1101Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig808 880..1101 +
1683187018.6984572-CDS-P-wetherbeei_contig808:1509..16771683187018.6984572-CDS-P-wetherbeei_contig808:1509..1677Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig808 1510..1677 +
1683187018.7138965-CDS-P-wetherbeei_contig808:1807..23731683187018.7138965-CDS-P-wetherbeei_contig808:1807..2373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig808 1808..2373 +
1683187018.7242079-CDS-P-wetherbeei_contig808:2541..27671683187018.7242079-CDS-P-wetherbeei_contig808:2541..2767Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig808 2542..2767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig808.1.1

>prot_P-wetherbeei_contig808.1.1 ID=prot_P-wetherbeei_contig808.1.1|Name=mRNA_P-wetherbeei_contig808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=394bp
MPSRAGDVYSGGCGPCSGDPLTPCCSGHGRLRWHGGDQLEANFVNGGVAD
GSKAVLRYRNGAIYFGQFRGGVPEGPGVVYLSSSGHSSGAAELDDLSAEI
MWYKGDFQGGLPHGYGLVKWRDAARARFPVGASGSGSGGYGGGYGEQKEA
ELGLMAVRAGFDNPFDDDDEEEEDAAGTAAATGVGAGSADATPAPSPTPV
PRLSDAAVEMNAETAAGASAAGVADTVSTPSHAARRTADVEAEASPLCES
STSSSPSPGRWHGGDGAAAARAAAVAARARERGGAAEDDDYEYEVAFRHG
GMVRNDPRNLRLAALKFGRAEVRRLLKQQQQAEEALQRLRSTALCLICNG
VEMNALLLRCAHRCTCVTCAALISDCPLCGKPIGGKIVRIYTT*
back to top

mRNA from alignment at P-wetherbeei_contig808:517..3725+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig808.1.1 ID=mRNA_P-wetherbeei_contig808.1.1|Name=mRNA_P-wetherbeei_contig808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3209bp|location=Sequence derived from alignment at P-wetherbeei_contig808:517..3725+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCAGCGGCAGCGGTGGCGATGACGGTGGCGGCGGCGGCAGTGGTGGC
GGCGGCGCCGTTACGACGTTCGAAGGAGATTTCCGAAGCGGCGAGCGGCA
CGGACGTGGGCGGCTGATCCTGGCGAACGGCGACATCTGGCAGTGCGTGT
GGGACACTGGCGTCGTGAAGGCCGGCACCGGCTCACTCATCACATCGACG
GGTAAGTTTTACCTCCTTTTAGCAGTAGCCGATACCGTTGCACGGCAATG
AAGAAATCGGAAGGCGATTCTTCTTCGTCTTGATTTGTCCATCGCTTTCG
CATGCCCAATCCGTTGTCGCAGTTCGTTCTTCTTGAAAAGTCGGCCTCTT
AGTTCCTTTCGCTATGCCATCGAGGGCAGGCGACGTGTACAGCGGCGGGT
GCGGCCCGTGCTCCGGGGACCCGCTGACGCCGTGCTGCAGCGGCCATGGG
CGCCTGCGGTGGCACGGCGGGGACCAGCTGGAGGCCAATTTTGTCAACGG
CGGCGTGGCGGACGGCTCCAAGGCCGTGCTGCGCTACCGGAACGGTGCCA
TCTACTTCGGCCAGTTCCGCGGCGGCGTGCCGGAGGTGCGTCGTGTCTTT
GGCTCTGCAGACTACTTACTACCTTTCTACAGCATACATTGTTCCGCAAA
TCGCCCTGGGATTGGCAGATGTGTGCATATGGTGTTTCATTGCTCCTGTT
TGCGTTCCATTGGTGCCGTAAATTGCTCGAACCATTTCCTGTCAGAATGG
AGCGTTCGCCTTCTTGTGATGCAGTCTCGTTCTGAGAAGTAGTCGATTTG
GAGGACCTATGCATGGCCGCTCGTATGGATTGGTCGCCTAGTGCCAATCA
CCTTGACTTATCACAGCAACCGTCACCGCCGCCGCCGCTGCTGCGCCACT
TTCGCCGCCCTTGCCGCTCTCGCCGCTGCCACGCATTGCCGCGCTGCTGC
CGTCCTCTGCTGTATTTTTTGCGACATTTTCCTCCACCGATAGGGCCCGG
GGGTAGTGTACTTGTCATCAAGCGGCCACTCGTCGGGTGCGGCGGAACTC
GACGATCTGTCCGCAGAAATTATGTGGTATAAGGGCGACTTCCAGGGCGG
GCTGCCGCACGGCTACGGCCTCGTCAAGTGGCGGGACGCTGCCCGCGCCC
GTTTCCCCGTGGTGAGGACCGTTGAAATGCGTCTTATTTTATTGGGTCGA
AGCATCAGTCAACAACTATGCAATGGTCTGTCTGAATGTCTGCTGAATGT
TTAGCGTTCGTCGCCCGTCCGCCTTTCCGTCGACTCAGCAGGGCGCGTCG
GGCAGCGGAAGCGGCGGTTACGGCGGCGGTTATGGGGAGCAGAAAGAGGC
GGAGCTTGGCCTGATGGCCGTCCGCGCCGGCTTTGACAACCCTTTTGACG
ACGACGACGAGGAGGAGGAGGATGCGGCCGGCACCGCCGCTGCTACAGGT
GTCGGAGCGGGCAGCGCCGATGCCACTCCGGCCCCGTCGCCGACGCCGGT
GCCACGGCTATCGGATGCGGCAGTCGAAATGAACGCGGAAACGGCAGCGG
GCGCATCGGCAGCGGGCGTGGCGGATACTGTATCCACGCCATCGCATGCG
GCTCGCCGGACCGCTGACGTGGAGGCGGAGGCGTCGCCACTGTGCGAGTC
CAGCACCTCGTCATCGCCGTCGCCGGGGCGCTGGCACGGTGGCGACGGCG
CGGCGGCGGCGCGGGCGGCGGCGGTTGCGGCGCGGGCGCGGGAGCGCGGC
GGTGCGGCGGAAGACGACGACTACGAGTACGAGGTTGCGTTCCGCCACGG
AGGCATGGTGCGCAATGACCCGCGGAACCTCCGGCTGGCCGCTTTGAAGT
TTGGCAGGCAAGTAATAGGCGAAAGGTCGACGAAGAAGCGTTAACGTCCC
TTCTCTAATAACGCACTTTTCGCTTTTTGAACAGCGGGAAGCCTTGTCGA
TTTGAACAAACCACTGGCTGGCACCCTCGTTGAACTCAAGGCTTCGCTTT
TCCGTGCGACGGTTGGCCCCTGCAGGGCGGAGGTGCGTCGGCTACTGAAG
CAGCAGCAGCAGGCAGAGGAGGCCCTGCAGCGGCTGCGGTCAACAGCGCT
CTGCCTCATCTGCAATGGCGTAGAGATGAACGCGCTGCTGCTGCGCTGCG
CGCACCGCTGCACCTGTGTGACGTGCGCCGCGCTGATCAGCGACTGTCCG
CTTTGCGGAAAGCCCATCGGCGGCAAGATTGTCCGCATATACACCACCTG
AATGAAGCCAAGCCGGACAGAGAGCGATGACCCCGGCGGCCGGCAGCCGG
CGTTGGCGGGCGGCTGGCTGCGCCTTCGGCTGGCGACTGCTGGCGGCTGG
CGGCGGGCTGGGCGTGCTGACGCGGGCATGCCGGACGAGGCGGGCCAGCA
GCTGGCGCTGGCTGCTGGCGCGGGCGGACTGGCACAGCAGCACAGGGGTA
GCCGGCGTCGCACAGGCGCATGCAGCACGGGAGCCGCCCCGCACTGCGCC
GCCGGGAAAGGTTTCACGCTATACCAGTGCAAAAACGCAATGTTTAACGG
CTCGTTGCTGCAACAGTGGCGACAGGCGCAGTGGACCCAACTTGGACGAA
ACACAAATATGATGGCGCCGTTCTTCCGCCGGAACGGCCAGAAAGACGGT
GAAACGGATCGCCGTGCTTTCAAACCAGCGGCACGCTTTGGGTGCAACGC
GAGTGCAGTACGTGCCGCCATTTTTCCATCTTTCTCGCTGCACAGGCATC
AACGCACAGCGCCGACCGCCGCTTGGTGCGGCGGCGGCGCGCGCGCTACG
AAAGTGGTGGGGGAACAGAAGGAGGGGAAGATATGGTTCGAGCGCGCAAA
AGTTCGACGCACCAAGTAATCGGTCAAAAAAGGAGAGTGCGAGGGGACAG
GATGGGTAGCAGGCTTCTTTCGGGCCTGGTGGGTTGTAGGAGGTTGTGTG
GTACATTGAGGTCCATACATTCTTTGAGTGTTGTGTGCTGTGGCGGAGCC
TTTCGGGATATTTGAGGGAAAAGTTGGTGCGTAGATCGGTTGACTGCGGC
ATCGCCGTAAGAGCAGGGCACCCGCCTCACCGCCAGGCGCCGCGGTTGCT
GTATCGCGCATCGGAGCGGCGCCCGGCGGCGGTGAAGGCGACGGCGGCTG
GGCCATAAACCGCTGTGGTTAGGCTGTCAAAGCTCTAATCTATCCTGGTT
AATAAGCGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig808:517..3725+

>mRNA_P-wetherbeei_contig808.1.1 ID=mRNA_P-wetherbeei_contig808.1.1|Name=mRNA_P-wetherbeei_contig808.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1182bp|location=Sequence derived from alignment at P-wetherbeei_contig808:517..3725+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCATCGAGGGCAGGCGACGTGTACAGCGGCGGGTGCGGCCCGTGCTC
CGGGGACCCGCTGACGCCGTGCTGCAGCGGCCATGGGCGCCTGCGGTGGC
ACGGCGGGGACCAGCTGGAGGCCAATTTTGTCAACGGCGGCGTGGCGGAC
GGCTCCAAGGCCGTGCTGCGCTACCGGAACGGTGCCATCTACTTCGGCCA
GTTCCGCGGCGGCGTGCCGGAGGGCCCGGGGGTAGTGTACTTGTCATCAA
GCGGCCACTCGTCGGGTGCGGCGGAACTCGACGATCTGTCCGCAGAAATT
ATGTGGTATAAGGGCGACTTCCAGGGCGGGCTGCCGCACGGCTACGGCCT
CGTCAAGTGGCGGGACGCTGCCCGCGCCCGTTTCCCCGTGGGCGCGTCGG
GCAGCGGAAGCGGCGGTTACGGCGGCGGTTATGGGGAGCAGAAAGAGGCG
GAGCTTGGCCTGATGGCCGTCCGCGCCGGCTTTGACAACCCTTTTGACGA
CGACGACGAGGAGGAGGAGGATGCGGCCGGCACCGCCGCTGCTACAGGTG
TCGGAGCGGGCAGCGCCGATGCCACTCCGGCCCCGTCGCCGACGCCGGTG
CCACGGCTATCGGATGCGGCAGTCGAAATGAACGCGGAAACGGCAGCGGG
CGCATCGGCAGCGGGCGTGGCGGATACTGTATCCACGCCATCGCATGCGG
CTCGCCGGACCGCTGACGTGGAGGCGGAGGCGTCGCCACTGTGCGAGTCC
AGCACCTCGTCATCGCCGTCGCCGGGGCGCTGGCACGGTGGCGACGGCGC
GGCGGCGGCGCGGGCGGCGGCGGTTGCGGCGCGGGCGCGGGAGCGCGGCG
GTGCGGCGGAAGACGACGACTACGAGTACGAGGTTGCGTTCCGCCACGGA
GGCATGGTGCGCAATGACCCGCGGAACCTCCGGCTGGCCGCTTTGAAGTT
TGGCAGGGCGGAGGTGCGTCGGCTACTGAAGCAGCAGCAGCAGGCAGAGG
AGGCCCTGCAGCGGCTGCGGTCAACAGCGCTCTGCCTCATCTGCAATGGC
GTAGAGATGAACGCGCTGCTGCTGCGCTGCGCGCACCGCTGCACCTGTGT
GACGTGCGCCGCGCTGATCAGCGACTGTCCGCTTTGCGGAAAGCCCATCG
GCGGCAAGATTGTCCGCATATACACCACCTGA
back to top