mRNA_P-wetherbeei_contig8071.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8071.1.1
Unique NamemRNA_P-wetherbeei_contig8071.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8071.1.1 vs. uniprot
Match: A0A835Z3H4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H4_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.400e-29
Identity = 85/211 (40.28%), Postives = 108/211 (51.18%), Query Frame = 1 
Query:  136 ETGGSLAMAGMLPGTSGGSAGPRPR-------------LAFGWLRELEVSECNSLQGIWGADLPELVRLSVTGCGEFTALDVWAPRLRRLALWGCPLLEGWSLREGNMASLQEAALNGCRQLSLGFLAKLIDHCRELRMLELVGAATGXXXXXXXXXXXXXXXXXXXXSRRDNPKADHGRINIKSTAA-LKNLERGRPKLLVVRTKNQMAA 726
            E   S A A     TSGG A  R R             L F  L+ LE+S C++L+G+ G + P L+ LSVTGC  F A DV A R+            GW L   ++A++Q A LNGCR L   F A L+DHCR +R LE+ GAA                       +RD   +DH    +KS AA L+NLE+GRP+L VVRTKNQ+AA
Sbjct:  205 EANASAAAAEKGADTSGGGAAHRSRGSSVASQGEAETLLKFESLQVLELSNCSALEGVVGVECPSLLHLSVTGCRAFAAFDVDAHRVTXXXXXXXXXXXGWELSGKSLANVQVARLNGCRALPFKFFAALVDHCRHMRRLEICGAAC-----EGGLTSSERVRQQYPGGKRDAMNSDHF-SRVKSRAAPLRNLEKGRPRLDVVRTKNQLAA 409
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BLAST of mRNA_P-wetherbeei_contig8071.1.1 vs. uniprot
Match: D7G8C1_ECTSI (Hypothetical leucine rich repeat zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.430e-19
Identity = 75/223 (33.63%), Postives = 101/223 (45.29%), Query Frame = 1 
Query:  133 QETGGSLAMAGMLPGTSGGSAGPRPRLAFGWLRELEVSECNSLQGIWGADLPELVRLSVTGCGEFTALDVW-APRLRRLALWGCPLLEGWSL----------------REGNMASLQEAALNGCRQLSLGFLAKLIDHCRELRMLELVGAATGXXXXXXXXXXXXXXXXXXXXSRRDNPKADHGRINIKSTAALKNLERGRPKLLVVRTKNQMAAAVAAAREG 750
            +  GG+        G+ GG  G  P + F  L+ LE+  C  L+ + G   P L    VT C E ++L +  A  L  L L GC  LE W L                   ++A L+   LN CR L   FLAKL+DH + LR LE+ GAA                       +RD  + +  R+  K+TA LK L++GRPKL+VVRTK +       AREG
Sbjct: 1361 ERAGGTAGFESRRDGSRGGD-GSAPEVCFKNLQFLEIHSCPGLKRLEGIRCPALAVARVTACRELSSLGLEEAFVLSDLDLAGCVRLESWELPPPAPPGGNAASSGVASSASLAELRVVVLNYCRGLQAKFLAKLVDHAKHLRRLEIYGAAA-VVGPHPHGGSSSKTKKEQTAGKRDLSRVEFNRLAGKATAILKGLDKGRPKLVVVRTKKEFLREQEGAREG 1581
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BLAST of mRNA_P-wetherbeei_contig8071.1.1 vs. uniprot
Match: A0A6H5JVX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.600e-18
Identity = 68/196 (34.69%), Postives = 89/196 (45.41%), Query Frame = 1 
Query:  181 SGGSAGPRPRLAFGWLRELEVSECNSLQGIWGADLPELVRLSVTGCGEFTALDVW-APRLRRLALWGCPLLEGWSL----------------REGNMASLQEAALNGCRQLSLGFLAKLIDHCRELRMLELVGAATGXXXXXXXXXXXXXXXXXXXXSRRDNPKADHGRINIKSTAALKNLERGRPKLLVVRTKNQ 717
            S G  G  P + F  L+ LE+  C  L+ + G   P L    VT C E + L +  A  L  L L GC  LE W L                   ++A L+   LN CR L   FLAKL+DH + LR LE+ GAA                       +RD  + +  R+  K+T  LK L++GRPKLLVVRTK +
Sbjct:  976 SRGGDGSAPEVCFKNLQFLEIHSCPGLKRLEGIRCPALAVARVTACRELSTLGLEEAFVLSHLDLAGCVRLEPWELPPPXXXXXXXXXXXXXXAASLAELRVVVLNYCRGLQAKFLAKLVDHAKHLRRLEIYGAAA-VVGPHPHGGGSNKTKKEQTAGKRDLSRVEFNRLATKATTILKGLDKGRPKLLVVRTKKE 1170
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8071.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z3H4_9STRA2.400e-2940.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G8C1_ECTSI2.430e-1933.63Hypothetical leucine rich repeat zinc finger prote... [more]
A0A6H5JVX9_9PHAE6.600e-1834.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8071contigP-wetherbeei_contig8071:133..882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8C1
PFAMsF-box-like,LRR_6
Model size750
Max annot lvl2759|Eukaryota
KEGG koko:K17199
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.98e-20
EggNOG OGsKOG4341@1|root,KOG4341@2759|Eukaryota
Descriptionmodulation by host of viral RNA genome replication
Cds size750
COG categoryKLT
BRITEko00000,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187018.3009984-CDS-P-wetherbeei_contig8071:132..8821683187018.3009984-CDS-P-wetherbeei_contig8071:132..882Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8071 133..882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8071.1.1prot_P-wetherbeei_contig8071.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8071 133..882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8071.1.1

>prot_P-wetherbeei_contig8071.1.1 ID=prot_P-wetherbeei_contig8071.1.1|Name=mRNA_P-wetherbeei_contig8071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=250bp
RRANTRHADGAAAGDSATGAGGTSTMPRGPARGTGRAGGGGNINQETGGS
LAMAGMLPGTSGGSAGPRPRLAFGWLRELEVSECNSLQGIWGADLPELVR
LSVTGCGEFTALDVWAPRLRRLALWGCPLLEGWSLREGNMASLQEAALNG
CRQLSLGFLAKLIDHCRELRMLELVGAATGGGGGGGGGGGSWGGGGGSGG
SRRDNPKADHGRINIKSTAALKNLERGRPKLLVVRTKNQMAAAVAAAREG
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mRNA from alignment at P-wetherbeei_contig8071:133..882-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8071.1.1 ID=mRNA_P-wetherbeei_contig8071.1.1|Name=mRNA_P-wetherbeei_contig8071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig8071:133..882- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGGGCAAACACTCGTCATGCCGACGGCGCAGCCGCTGGCGATAGCGC
AACCGGCGCCGGCGGCACCAGCACCATGCCACGGGGGCCAGCGCGGGGAA
CGGGACGCGCGGGCGGTGGCGGCAACATCAACCAAGAGACTGGCGGCAGC
CTGGCGATGGCAGGCATGCTGCCGGGCACCAGTGGCGGCAGCGCCGGGCC
TCGGCCGCGGCTTGCGTTCGGATGGCTGCGAGAGCTGGAAGTCAGCGAGT
GCAACAGCCTCCAGGGAATCTGGGGTGCCGACCTGCCGGAGCTGGTGCGC
CTGTCGGTCACCGGTTGCGGCGAGTTCACCGCCCTCGACGTGTGGGCCCC
GCGGCTGCGGCGACTGGCCCTGTGGGGCTGCCCGCTGCTGGAAGGCTGGT
CGCTGCGCGAGGGAAATATGGCCTCGCTGCAGGAGGCGGCGCTGAACGGC
TGCCGGCAGCTCTCGTTGGGGTTCCTTGCCAAGCTGATTGACCACTGCCG
CGAGCTGCGGATGCTTGAGTTGGTCGGCGCGGCGACGGGCGGCGGCGGCG
GCGGTGGCGGCGGCGGCGGCAGTTGGGGCGGCGGCGGCGGCAGCGGTGGC
AGCCGGAGGGATAATCCAAAGGCGGATCATGGGAGAATCAACATAAAGTC
GACGGCGGCGCTGAAGAACCTGGAGCGCGGTCGTCCAAAGCTGCTCGTCG
TGCGGACCAAGAACCAAATGGCGGCAGCCGTCGCGGCTGCGCGGGAGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8071:133..882-

>mRNA_P-wetherbeei_contig8071.1.1 ID=mRNA_P-wetherbeei_contig8071.1.1|Name=mRNA_P-wetherbeei_contig8071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig8071:133..882- (Phaeothamnion wetherbeei SAG_119_79)
CGCCGGGCAAACACTCGTCATGCCGACGGCGCAGCCGCTGGCGATAGCGC
AACCGGCGCCGGCGGCACCAGCACCATGCCACGGGGGCCAGCGCGGGGAA
CGGGACGCGCGGGCGGTGGCGGCAACATCAACCAAGAGACTGGCGGCAGC
CTGGCGATGGCAGGCATGCTGCCGGGCACCAGTGGCGGCAGCGCCGGGCC
TCGGCCGCGGCTTGCGTTCGGATGGCTGCGAGAGCTGGAAGTCAGCGAGT
GCAACAGCCTCCAGGGAATCTGGGGTGCCGACCTGCCGGAGCTGGTGCGC
CTGTCGGTCACCGGTTGCGGCGAGTTCACCGCCCTCGACGTGTGGGCCCC
GCGGCTGCGGCGACTGGCCCTGTGGGGCTGCCCGCTGCTGGAAGGCTGGT
CGCTGCGCGAGGGAAATATGGCCTCGCTGCAGGAGGCGGCGCTGAACGGC
TGCCGGCAGCTCTCGTTGGGGTTCCTTGCCAAGCTGATTGACCACTGCCG
CGAGCTGCGGATGCTTGAGTTGGTCGGCGCGGCGACGGGCGGCGGCGGCG
GCGGTGGCGGCGGCGGCGGCAGTTGGGGCGGCGGCGGCGGCAGCGGTGGC
AGCCGGAGGGATAATCCAAAGGCGGATCATGGGAGAATCAACATAAAGTC
GACGGCGGCGCTGAAGAACCTGGAGCGCGGTCGTCCAAAGCTGCTCGTCG
TGCGGACCAAGAACCAAATGGCGGCAGCCGTCGCGGCTGCGCGGGAGGGG
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