mRNA_P-wetherbeei_contig8064.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8064.1.1
Unique NamemRNA_P-wetherbeei_contig8064.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig8064.1.1 vs. uniprot
Match: Q6XM17_9PHYC (FirrV-1-B19 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM17_9PHYC)

HSP 1 Score: 67.4 bits (163), Expect = 2.220e-12
Identity = 32/94 (34.04%), Postives = 52/94 (55.32%), Query Frame = 1 
Query:    1 SRLSHAFVKGSLDPARWTARTVAKECAIMYWLYNFTDYPVRLSKSINNMNVLFQRVGDWETAWRQLNQVAHAKIKEECINANGGIPDPWPWKIV 282
            SRL  ++V+G+LD   W    V  ECA+M+WLYN+T+Y  +L+++ +  ++ F    + +     +       IK   I A+GGIP  WPW + 
Sbjct:   30 SRLCSSYVEGTLDE-NWDVDRVVHECALMHWLYNYTNYASKLTEAYSFFSMFFT---EGKAVKEFIKDKVQPVIKFGIIEAHGGIPMTWPWMLT 119
[Close]
BLAST of mRNA_P-wetherbeei_contig8064.1.1 vs. uniprot
Match: D8LPD1_ECTSI (EsV-1-100 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD1_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.860e-12
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:    1 SRLSHAFVKGSLDPARWTARTVAKECAIMYWLYNFTDYPVRLSKSINNMNVLF-----QRVGDWETAWRQLNQVAHAKIKEECINANGGIPDPWPW 273
            SRL   ++ G   P  WTA  VAKECA+M+WL+NFTDY  R + +   ++        Q   D+      + +  +  IKE+ +  N G P+ WPW
Sbjct:   30 SRLCSCYINGITSP-EWTASKVAKECALMHWLHNFTDYEKRCAVAATQLSRKMWFHSGQNFADY------MKRRVYPAIKEDILKENEGGPEEWPW 118
[Close]
BLAST of mRNA_P-wetherbeei_contig8064.1.1 vs. uniprot
Match: Q8QNH8_ESV1K (EsV-1-100 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH8_ESV1K)

HSP 1 Score: 66.2 bits (160), Expect = 8.070e-12
Identity = 34/96 (35.42%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:    1 SRLSHAFVKGSLDPARWTARTVAKECAIMYWLYNFTDYPVRLSKSINNMNVLF-----QRVGDWETAWRQLNQVAHAKIKEECINANGGIPDPWPW 273
            SRL   ++ G +    WTA  VAKECAIM+WL+NFTDY  R  ++   ++        Q   D+      + +  +  IK+  +N N G P  WPW
Sbjct:   30 SRLCSCYING-ITSTEWTASKVAKECAIMHWLHNFTDYEERCVEAAAQLSRKMWFHSGQNFADY------MKRRVYPSIKQSILNENAGGPKEWPW 118
[Close]
BLAST of mRNA_P-wetherbeei_contig8064.1.1 vs. uniprot
Match: B5LWB6_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWB6_9PHYC)

HSP 1 Score: 63.2 bits (152), Expect = 1.090e-10
Identity = 35/95 (36.84%), Postives = 48/95 (50.53%), Query Frame = 1 
Query:    1 SRLSHAFVKGSLDPARWTARTVAKECAIMYWLYNFTDYPVRLSKSINNMNVLFQRVGDWETAWRQLNQVAHAK----IKEECINANGGIPDPWPW 273
            SRL   F++G+LD  RW    V  ECA+M WL+ +TDYP RL ++       F+   D+    + +      K    IK   I+  GGIP  WPW
Sbjct:   32 SRLCSGFIEGTLDD-RWDLERVVHECALMNWLFVYTDYPQRLEEA-------FRFFSDFLPTGKAVQAFVREKVQPVIKFGTISKCGGIPSRWPW 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8064.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q6XM17_9PHYC2.220e-1234.04FirrV-1-B19 n=1 Tax=Feldmannia irregularis virus a... [more]
D8LPD1_ECTSI2.860e-1235.42EsV-1-100 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QNH8_ESV1K8.070e-1235.42EsV-1-100 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
B5LWB6_9PHYC1.090e-1036.84Uncharacterized protein n=1 Tax=Feldmannia species... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8064contigP-wetherbeei_contig8064:1..285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size285
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-100
Ec32 orthologEc-06_005810.1
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187018.072267-CDS-P-wetherbeei_contig8064:0..2851683187018.072267-CDS-P-wetherbeei_contig8064:0..285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8064 1..285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8064.1.1prot_P-wetherbeei_contig8064.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8064 1..285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8064.1.1

>prot_P-wetherbeei_contig8064.1.1 ID=prot_P-wetherbeei_contig8064.1.1|Name=mRNA_P-wetherbeei_contig8064.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
SRLSHAFVKGSLDPARWTARTVAKECAIMYWLYNFTDYPVRLSKSINNMN
VLFQRVGDWETAWRQLNQVAHAKIKEECINANGGIPDPWPWKIV*
back to top

mRNA from alignment at P-wetherbeei_contig8064:1..285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8064.1.1 ID=mRNA_P-wetherbeei_contig8064.1.1|Name=mRNA_P-wetherbeei_contig8064.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig8064:1..285+ (Phaeothamnion wetherbeei SAG_119_79)
TCTAGACTATCACATGCGTTTGTAAAGGGATCGTTGGACCCAGCGCGTTG
GACGGCAAGGACGGTTGCAAAAGAGTGTGCAATAATGTATTGGTTATATA
ACTTTACAGACTATCCAGTCCGCCTGAGCAAGTCCATCAACAACATGAAC
GTGCTCTTTCAACGGGTGGGTGACTGGGAAACGGCATGGAGACAGTTGAA
TCAGGTGGCGCACGCCAAGATCAAAGAAGAATGCATCAACGCAAACGGAG
GGATCCCGGATCCATGGCCGTGGAAGATCGTTTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8064:1..285+

>mRNA_P-wetherbeei_contig8064.1.1 ID=mRNA_P-wetherbeei_contig8064.1.1|Name=mRNA_P-wetherbeei_contig8064.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig8064:1..285+ (Phaeothamnion wetherbeei SAG_119_79)
TCTAGACTATCACATGCGTTTGTAAAGGGATCGTTGGACCCAGCGCGTTG
GACGGCAAGGACGGTTGCAAAAGAGTGTGCAATAATGTATTGGTTATATA
ACTTTACAGACTATCCAGTCCGCCTGAGCAAGTCCATCAACAACATGAAC
GTGCTCTTTCAACGGGTGGGTGACTGGGAAACGGCATGGAGACAGTTGAA
TCAGGTGGCGCACGCCAAGATCAAAGAAGAATGCATCAACGCAAACGGAG
GGATCCCGGATCCATGGCCGTGGAAGATCGTTTAA
back to top