mRNA_P-wetherbeei_contig8061.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8061.3.1
Unique NamemRNA_P-wetherbeei_contig8061.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Match: A0A7X9KIR9_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KIR9_9ACTN)

HSP 1 Score: 205 bits (522), Expect = 1.730e-64
Identity = 100/182 (54.95%), Postives = 128/182 (70.33%), Query Frame = 1
Query:    1 EPDVPPARRWVKVLLALICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLNDVVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLRTGELAPYRESVVEGGPVTNVITDFTSG---NNVKSCAPPGELNGD 537
            EP  P    WVK +L L CA +A+MW+Y F FA  +GVY++++  WR AA+ +C  A   R AL DT  GYIANPT EQM QRADIVD+ATDI+ERML+D+VA+P+  + D   V+ +   +RI++ DRR YTA LR  EL PY E+VV GGPVTNV+ DFT+G   N+V  C+PPGEL GD
Sbjct:    8 EPARPRTSAWVKAVLVLCCAVVASMWIYYFFFATDEGVYQLQDKSWRVAAEQVCSAASAEREALTDTSDGYIANPTDEQMVQRADIVDKATDILERMLDDLVAIPVDNEDDATRVEFFAENYRIVLADRRRYTASLRRFELVPYSETVVGGGPVTNVVLDFTAGVKGNDVPECSPPGELGGD 189          
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Match: A0A6I3EY63_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3EY63_9ACTN)

HSP 1 Score: 197 bits (502), Expect = 1.950e-61
Identity = 94/181 (51.93%), Postives = 128/181 (70.72%), Query Frame = 1
Query:    4 PDVPPARRWVKVLLALICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLNDVVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLRTGELAPYRESVVEGGPVTNVITDFTSG---NNVKSCAPPGELNGD 537
            P   P R WVK++L   C  +AAMWV+ F FA   GVY++++  WR  A  +C     RR AL DT GGYIA+PT EQM QRADIVD ATD++++M+ D+VA+P+  D+D+  + V++  +RI+I+DRR YTA LR  +LAPY E+VV GGPV+NV+ DFT+G   N++  C+PPGEL GD
Sbjct:   10 PAPTPVRLWVKLILGACCLAVAAMWVFYFFFATDKGVYQIEDASWRPQALQVCAAVDTRRSALEDTTGGYIAHPTHEQMLQRADIVDTATDMLDQMITDLVAIPVNNDNDRARLQVFEDNYRIIIKDRRRYTAALREFKLAPYTETVVGGGPVSNVVLDFTAGVKGNDLPLCSPPGELGGD 190          
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Match: A0A7K1B1Z6_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1B1Z6_9ACTN)

HSP 1 Score: 179 bits (454), Expect = 5.760e-54
Identity = 89/179 (49.72%), Postives = 121/179 (67.60%), Query Frame = 1
Query:    1 EPDVPPARRWVKVLLALICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLNDVVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLRTGELAPYRESVVEGGPVTNVITDFTSGNNVKSCAPPGELNGD 537
             P    A   V+ +LA++   I AMWVYAF FA + G+Y V+++ W   AQ IC+  + RRL L D + GYI +PT EQM QRADIVDQATD+++  L++V  +   +  DQ  V  ++R+F +LI DRRAYT RLR  EL PY E+ ++GGPVTN++ DFT+ N +K CAPPGEL G+
Sbjct:   28 RPKRSTATIAVRSVLAVVVLLIVAMWVYAFGFAERQGLYVVEDEAWSERAQGICEVYEQRRLELTDVDEGYIPDPTNEQMLQRADIVDQATDLLQAELDEVFEVLPASARDQELVLEYRRWFEVLISDRRAYTERLRNLELGPYLETKIDGGPVTNLLVDFTTANRMKRCAPPGELGGN 206          
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Match: A0A539DVK4_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DVK4_9ACTN)

HSP 1 Score: 177 bits (448), Expect = 3.120e-53
Identity = 90/179 (50.28%), Postives = 118/179 (65.92%), Query Frame = 1
Query:    1 EPDVPPARRWVKVLLALICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLNDVVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLRTGELAPYRESVVEGGPVTNVITDFTSGNNVKSCAPPGELNGD 537
            E   P    +VKVLL LI   + AMWVYAF FA +   YR+ +  WR+ AQ IC   + +RL L DT  GYIA+PT  QM +RADIV+ ATDI++  L +V A+   ++ DQ  +  ++ Y+  LI DRR Y  +LR+ +L PY ES V+GGPVTNVITDFT  N +++CAPPGEL GD
Sbjct:   15 EERRPRRLSFVKVLLGLIILALVAMWVYAFGFAPRKAAYRIDDGAWRARAQEICARYEAQRLELVDTSAGYIADPTDAQMIERADIVEAATDILQASLAEVSAVLPASERDQSLLAQYRSYYDTLIADRRLYVEQLRSLDLQPYTESAVDGGPVTNVITDFTIINEMRACAPPGELGGD 193          
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Match: A0A3C2B317_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B317_9ACTN)

HSP 1 Score: 166 bits (420), Expect = 7.150e-49
Identity = 82/181 (45.30%), Postives = 120/181 (66.30%), Query Frame = 1
Query:    1 EPDVPPARRWVKVLLALICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLNDVVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLRTGELAPYRESVVE--GGPVTNVITDFTSG---NNVKSCAPPGEL 528
            + + P  R WVK++L L C  +AAMW+Y  + A   GVY++ +D W   A  +C  A+    AL  TEGG+I  PTVEQM +RA IV +ATD++E+M++DV+A+P+  D D+  + V++ ++R++I DRR Y   +  GE   Y E+VV+  GGPVTNVITDFT+G   N+V  C+PP +L
Sbjct:   16 QDERPAGRWWVKLILLLGCLLMAAMWLYYLLLAPDKGVYQLDDDTWAPQAAAVCAAAKAEMRALETTEGGFIEEPTVEQMAERARIVGEATDVLEQMVDDVMAIPVDNDRDRAILAVFEEHYRMVIADRRRYENSMANGENVRYTETVVKEAGGPVTNVITDFTAGVKGNDVPECSPPNDL 196          
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Match: A0A094PC34_9ACTN (Uncharacterized protein n=1 Tax=actinobacterium acAcidi TaxID=1504320 RepID=A0A094PC34_9ACTN)

HSP 1 Score: 130 bits (328), Expect = 2.850e-35
Identity = 71/170 (41.76%), Postives = 105/170 (61.76%), Query Frame = 1
Query:   19 ARRWVKVLLALICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLNDVVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLRTGELAPYRESVVEGGPVTNVITDFTSGNNVKSCAPPGEL 528
            ARR ++V L  IC  IA  WVYAF+FA K+GV  +++  W   A+ IC++A   R  L D     I +   + + +RADI+D+AT II++ML+DV A   T   D   ++ W+  +   I+ R  YTA+LRTG  AP+ ES++EG P ++ I DFT+ N +KSC+ P +L
Sbjct:   11 ARRMLQVFLGSICLIIAIFWVYAFLFASKEGVNVLEDKAWTVRAEEICRNANLERDKLVDLR--RINSVEGDALAERADIIDKATVIIQKMLDDVTAEVPTGVDDARLMEKWRSIYLSWIDARVKYTAKLRTGVNAPFAESMLEGSPESDSINDFTTNNRMKSCSSPMDL 178          
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Match: A0A7K0YT42_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A7K0YT42_9ACTN)

HSP 1 Score: 130 bits (327), Expect = 3.400e-35
Identity = 71/171 (41.52%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   19 ARRWVKVLLALICAGIAAMWVYAFVFA-GKDGVYRVKNDQWRSAAQTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLNDVVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLRTGELAPYRESVVEGGPVTNVITDFTSGNNVKSCAPPGEL 528
            +R+ VK+LL +I  GIA  WV+A  F   +D V  V +  W   A  +C++A  +R  L D        P    + +RADI+D+AT II++ML+DV +  L +  DQ  VD W+  F+  I  R AYTA LRTGE AP+ ES+VEG P + +I  F   N +KSC  P +L
Sbjct:    4 SRQPVKILLTIISLGIAVFWVWALFFPPSRDNVAAVDDTSWSIRANALCQEANLQRDTLVDLRRINTVGPNA--LSERADIIDEATAIIQKMLDDVTSQQLASPQDQKRVDTWRDIFQDWINGRIAYTAILRTGENAPFAESMVEGSPASTLIDYFAQANRMKSCGAPKDL 172          
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Match: A0A4R7I139_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7I139_9ACTN)

HSP 1 Score: 128 bits (321), Expect = 3.940e-34
Identity = 68/178 (38.20%), Postives = 106/178 (59.55%), Query Frame = 1
Query:    1 EPDVPPARRWVKVLLALICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLNDVVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLR-TGELAPYRESVVEGGPVTNVITDFTSGNNVKSCAPPGELN 531
            + D      W++  L +I A  AA W++A  FA K+ V R+ +  W   A+ IC +A + R+ LAD      A P  E + +RA+IVD++TDI+E+ML+DVVA+  T +  Q  V +W+  +RI ++DRRAY   LR TGE + + ES V+  P++  +  F   N + +CAPP +L+
Sbjct:   11 QADERRPNPWLRGFLLVILALFAAFWIWALFFASKEAVNRIDDRAWAERAEAICLEATEERIQLADLTRIDQAGP--ELIYRRAEIVDESTDILEQMLDDVVAVEPTDEKGQGIVPLWEEEYRIYLDDRRAYADTLRETGENSAFYESAVDELPISERLATFAGDNEMSTCAPPIDLS 186          
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Match: A0A6I3N1A9_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3N1A9_9ACTN)

HSP 1 Score: 127 bits (319), Expect = 5.010e-34
Identity = 63/170 (37.06%), Postives = 100/170 (58.82%), Query Frame = 1
Query:   22 RRWVKVLLALICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAAQTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLNDVVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLRTGELAPYRESVVEGGPVTNVITDFTSGNNVKSCAPPGELN 531
            RR  K +L +IC  I  MW+YA  FA K  + ++ +  W+ AA+ IC  ++  R+AL D     + +     + +RA I+D+ATD +ER +N + AL ++    Q  V +W + +R  I DRR YT +LR+G   P+ E+V+EG P++  I  F + N + SCAPP +L+
Sbjct:    3 RRIYKPMLIVICLLIGVMWIYALFFASKVSINKIGDSSWKIAAEKICLVSEKERMALIDLR--KVKDSGANALSERAQIIDKATDSLERAVNALAALTISDAKGQALVPLWLQDYRTHISDRRGYTEKLRSGVNKPFSETVIEGLPISEKIATFAADNAISSCAPPIDLS 170          
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Match: A0A094PNJ1_9ACTN (Uncharacterized protein n=1 Tax=actinobacterium acAcidi TaxID=1504320 RepID=A0A094PNJ1_9ACTN)

HSP 1 Score: 127 bits (319), Expect = 6.660e-34
Identity = 72/177 (40.68%), Postives = 103/177 (58.19%), Query Frame = 1
Query:    1 EPDVPPARRWVKVLLALICAGIAAMWVYAFVFAG-KDGVYRVKNDQWRSAAQTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLNDVVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLRTGELAPYRESVVEGGPVTNVITDFTSGNNVKSCAPPGEL 528
            E   P  RR ++V LALIC GIA  WV+A  F   K  V +V +  W   A  IC  A   R  L D     I   + + + +RADI+D+AT I+++ML+DV+A   T   D   ++ W + ++  I +R  YTA LRTGE AP+ E+++EGGPV++ I DF   N +KSC+ P +L
Sbjct:    5 EKKAPIYRRPLQVFLALICLGIAVFWVWALFFPPTKQSVAKVDDVAWTVRANEICNQANLERDKLVDLR--RIDTVSGDALAERADIIDKATVIVQKMLDDVIAEVPTGPKDAALMNTWAKIYQGWINERIDYTAILRTGENAPFAETMLEGGPVSDYINDFAIANRMKSCSSPMDL 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8061.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KIR9_9ACTN1.730e-6454.95Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A6I3EY63_9ACTN1.950e-6151.93Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A7K1B1Z6_9ACTN5.760e-5449.72Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A539DVK4_9ACTN3.120e-5350.28Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3C2B317_9ACTN7.150e-4945.30Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A094PC34_9ACTN2.850e-3541.76Uncharacterized protein n=1 Tax=actinobacterium ac... [more]
A0A7K0YT42_9ACTN3.400e-3541.52Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A4R7I139_9ACTN3.940e-3438.20Uncharacterized protein n=1 Tax=Ilumatobacter flum... [more]
A0A6I3N1A9_9ACTN5.010e-3437.06Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A094PNJ1_9ACTN6.660e-3440.68Uncharacterized protein n=1 Tax=actinobacterium ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8061contigP-wetherbeei_contig8061:2286..2828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size543
Hectar predicted targeting categorysignal peptide
Exons1
Cds size543
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187018.0013583-CDS-P-wetherbeei_contig8061:2285..28281683187018.0013583-CDS-P-wetherbeei_contig8061:2285..2828Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8061 2286..2828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8061.3.1prot_P-wetherbeei_contig8061.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8061 2286..2828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8061.3.1

>prot_P-wetherbeei_contig8061.3.1 ID=prot_P-wetherbeei_contig8061.3.1|Name=mRNA_P-wetherbeei_contig8061.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
EPDVPPARRWVKVLLALICAGIAAMWVYAFVFAGKDGVYRVKNDQWRSAA
QTICKDAQDRRLALADTEGGYIANPTVEQMRQRADIVDQATDIIERMLND
VVALPLTTDHDQHAVDVWQRYFRILIEDRRAYTARLRTGELAPYRESVVE
GGPVTNVITDFTSGNNVKSCAPPGELNGDA*
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mRNA from alignment at P-wetherbeei_contig8061:2286..2828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8061.3.1 ID=mRNA_P-wetherbeei_contig8061.3.1|Name=mRNA_P-wetherbeei_contig8061.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig8061:2286..2828- (Phaeothamnion wetherbeei SAG_119_79)
GAGCCCGACGTTCCTCCTGCCCGCCGTTGGGTGAAGGTCCTGCTCGCGTT GATCTGCGCCGGCATCGCGGCGATGTGGGTGTACGCGTTCGTGTTCGCCG GCAAGGACGGCGTCTACCGGGTGAAGAACGACCAGTGGCGCTCCGCGGCA CAGACCATCTGCAAGGACGCGCAGGACCGTCGCCTCGCGCTGGCCGACAC CGAGGGCGGGTACATCGCCAACCCGACGGTCGAGCAGATGCGCCAGCGAG CCGACATCGTGGACCAGGCCACCGACATCATCGAGCGGATGCTGAACGAC GTCGTCGCCCTCCCGCTGACCACCGATCACGATCAGCACGCAGTGGACGT CTGGCAGCGGTACTTCCGCATCCTGATCGAGGACCGGCGCGCCTACACGG CACGGCTCCGCACCGGAGAACTGGCCCCGTACCGTGAGTCGGTCGTGGAG GGTGGTCCGGTGACCAACGTGATCACCGACTTCACCAGCGGCAACAACGT CAAGAGCTGCGCCCCGCCCGGCGAGCTCAACGGCGACGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8061:2286..2828-

>mRNA_P-wetherbeei_contig8061.3.1 ID=mRNA_P-wetherbeei_contig8061.3.1|Name=mRNA_P-wetherbeei_contig8061.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig8061:2286..2828- (Phaeothamnion wetherbeei SAG_119_79)
GAGCCCGACGTTCCTCCTGCCCGCCGTTGGGTGAAGGTCCTGCTCGCGTT
GATCTGCGCCGGCATCGCGGCGATGTGGGTGTACGCGTTCGTGTTCGCCG
GCAAGGACGGCGTCTACCGGGTGAAGAACGACCAGTGGCGCTCCGCGGCA
CAGACCATCTGCAAGGACGCGCAGGACCGTCGCCTCGCGCTGGCCGACAC
CGAGGGCGGGTACATCGCCAACCCGACGGTCGAGCAGATGCGCCAGCGAG
CCGACATCGTGGACCAGGCCACCGACATCATCGAGCGGATGCTGAACGAC
GTCGTCGCCCTCCCGCTGACCACCGATCACGATCAGCACGCAGTGGACGT
CTGGCAGCGGTACTTCCGCATCCTGATCGAGGACCGGCGCGCCTACACGG
CACGGCTCCGCACCGGAGAACTGGCCCCGTACCGTGAGTCGGTCGTGGAG
GGTGGTCCGGTGACCAACGTGATCACCGACTTCACCAGCGGCAACAACGT
CAAGAGCTGCGCCCCGCCCGGCGAGCTCAACGGCGACGCCTGA
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