mRNA_P-wetherbeei_contig8053.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8053.1.1
Unique NamemRNA_P-wetherbeei_contig8053.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Match: A0A7S2V2G5_9STRA (Superoxide dismutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G5_9STRA)

HSP 1 Score: 202 bits (514), Expect = 2.420e-64
Identity = 82/113 (72.57%), Postives = 102/113 (90.27%), Query Frame = 1
Query:    1 NHNFYWQSMSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKSDGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWWSLVNW 339
            NH FYW SMSP GGG+P+G +++AI++SFGSF++FK+KFS  AGGHFGSGWAWL KK DG+L +V THDASNPL EGKGKP++TCDVWEHA+YIDYRNA+P+YIAAWW+++NW
Sbjct:   73 NHTFYWNSMSPNGGGEPSGPISDAINSSFGSFESFKEKFSASAGGHFGSGWAWLCKKDDGSLEIVDTHDASNPLKEGKGKPILTCDVWEHAYYIDYRNARPSYIAAWWNVINW 185          
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Match: D8LI17_ECTSI (Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI17_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.180e-62
Identity = 82/113 (72.57%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 NHNFYWQSMSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKSDGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWWSLVNW 339
            NH FYW+S+SP+GGG+PTGA+ EAI+  FGSF+AFK+ FSD A GHFGSGWAWLVK   G + VVGTHDASNP+ EGKG P++TCDVWEHA+YIDYRN++P YIAAWW+LVNW
Sbjct:   74 NHTFYWKSLSPSGGGEPTGAVKEAIEEKFGSFEAFKKAFSDTAAGHFGSGWAWLVKTESGGVDVVGTHDASNPVKEGKGTPILTCDVWEHAYYIDYRNSRPGYIAAWWNLVNW 186          
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Match: A0A6V1U4U1_HETAK (Superoxide dismutase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U4U1_HETAK)

HSP 1 Score: 194 bits (492), Expect = 1.420e-60
Identity = 81/113 (71.68%), Postives = 97/113 (85.84%), Query Frame = 1
Query:    1 NHNFYWQSMSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKSDGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWWSLVNW 339
            NH FYW+SMSP+GGG PTG +A+AI+ASFGSFDAFK++FS  AGGHFGSGWAWL K +DG+L +  THDA N L EG G PL+TCDVWEHA+YIDYRNA+P Y+AAWW+L+NW
Sbjct:  105 NHTFYWKSMSPSGGGAPTGPIADAINASFGSFDAFKEQFSAVAGGHFGSGWAWLCKNADGSLSIQETHDAGNVLKEGLGTPLLTCDVWEHAYYIDYRNARPQYVAAWWNLINW 217          
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Match: A0A835ZFU3_9STRA (Superoxide dismutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFU3_9STRA)

HSP 1 Score: 191 bits (486), Expect = 4.980e-60
Identity = 81/113 (71.68%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    1 NHNFYWQSMSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKSDGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWWSLVNW 339
            NH+FYW S+SP GGG PTG +A+AI  SFG FD FK  F   AGGHFGSGWAWLVK  DG+L VV THDASNP+VE  GKP++TCDVWEHA+YIDYRNA+P+Y+AAWW+LVNW
Sbjct:   78 NHDFYWHSLSPEGGGTPTGPIADAIKESFGDFDKFKAAFDAAAGGHFGSGWAWLVKADDGSLKVVSTHDASNPVVEKLGKPIITCDVWEHAYYIDYRNARPSYLAAWWNLVNW 190          
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Match: W7T7U7_9STRA (Superoxide dismutase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7U7_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.470e-57
Identity = 80/113 (70.80%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 NHNFYWQSMSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKSDGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWWSLVNW 339
            NH FYW SM+P  GG P+G +A+ I+A+FGSFD FK +FS  A GHFGSGWAWLV K DG L VV THDASNPL EG G PL+TCDVWEHA+Y+DYRNA+PAY+ AWWSLVNW
Sbjct:   75 NHTFYWNSMAPNAGGAPSGPIADKINAAFGSFDNFKSQFSTAAAGHFGSGWAWLVLK-DGKLEVVSTHDASNPLKEGLGTPLLTCDVWEHAYYVDYRNARPAYVEAWWSLVNW 186          
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Match: A0A0G4GGW9_VITBC (Superoxide dismutase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GGW9_VITBC)

HSP 1 Score: 183 bits (465), Expect = 9.060e-57
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 1
Query:    1 NHNFYWQSMSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKSDGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWWSLVNW 339
            NH FYW  M P GGG PTGA+ + IDA+FGSFDAFK++FS  A GHFGSGWAWLV   DG L +VG HDA NP+ +G GK ++TCDVWEHA+Y+DYRN +P Y+AAWW+LVNW
Sbjct:   82 NHTFYWSCMKPGGGGLPTGAVKDKIDAAFGSFDAFKEQFSTAAAGHFGSGWAWLVAGDDGKLKIVGGHDAMNPMKDGSGKAILTCDVWEHAYYVDYRNERPKYVAAWWNLVNW 194          
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Match: A0A7C7YMU4_9ARCH (Superoxide dismutase n=2 Tax=Archaea TaxID=2157 RepID=A0A7C7YMU4_9ARCH)

HSP 1 Score: 178 bits (452), Expect = 5.890e-55
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 1
Query:    1 NHNFYWQSMSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKSDGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWWSLVNW 339
            NH FYW SMSP GGG+PTGA+A  ID +FGSF+ FK  F+  AGGHFGSGWAWLV  S+G L +V THDA NPL +G   P++TCDVWEHA+YID +NA+PAYIAAWW LVNW
Sbjct:   73 NHTFYWNSMSPNGGGEPTGAIAGKIDETFGSFEEFKTAFTAAAGGHFGSGWAWLVMNSNGGLEIVDTHDAGNPLTDGL-TPILTCDVWEHAYYIDRKNARPAYIAAWWELVNW 184          
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Match: A0A7C5EH16_9BACT (Superoxide dismutase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5EH16_9BACT)

HSP 1 Score: 177 bits (448), Expect = 2.310e-54
Identity = 76/113 (67.26%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 NHNFYWQSMSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKSDGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWWSLVNW 339
            NH+FYW+ +SP GGG P GA+A+AI+ SFGSFDAFK  F+  AGGHFGSGWAWLVK +DG L V  THDA  P+ +G  KP++TCDVWEHA+YIDYRNA+P YI A+W+LVNW
Sbjct:   73 NHSFYWKCLSPNGGGTPKGAIADAINESFGSFDAFKDAFTKAAGGHFGSGWAWLVKNADGKLEVTSTHDAGCPIRDG-AKPILTCDVWEHAYYIDYRNARPKYIEAFWNLVNW 184          
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Match: A0A0G4G4J6_VITBC (Superoxide dismutase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G4J6_VITBC)

HSP 1 Score: 176 bits (445), Expect = 7.480e-54
Identity = 72/113 (63.72%), Postives = 88/113 (77.88%), Query Frame = 1
Query:    1 NHNFYWQSMSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKSDGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWWSLVNW 339
            NH+FYW S+SP+GGG+P GA+  AI+  FGSF  FK  FS  A GHFGSGW WLVK +DG L +  THDA NPL +G G PL+TCDVWEHA+Y+DYRN +P+Y+ AWW+LVNW
Sbjct:   73 NHSFYWNSLSPSGGGEPKGAIKAAIEQDFGSFQKFKDDFSANAAGHFGSGWVWLVKGTDGKLKIHQTHDAGNPLRDGAGVPLLTCDVWEHAYYVDYRNDRPSYVKAWWNLVNW 185          
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Match: A0A4R6UMV6_9GAMM (Superoxide dismutase n=1 Tax=Permianibacter aggregans TaxID=1510150 RepID=A0A4R6UMV6_9GAMM)

HSP 1 Score: 175 bits (443), Expect = 1.370e-53
Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    1 NHNFYWQSMSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKSDGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWWSLVNW 339
            NH FYW S+SP GGG+P GALA+AI+ +FGSF AFK+KFS  A G+FGSGW WLVKKSDG++ +V T  A NPL++G  KPL+TCDVWEHA+YIDYRNA+P Y+ A+W+LVNW
Sbjct:   73 NHTFYWNSLSPNGGGEPKGALADAINKAFGSFAAFKEKFSASAVGNFGSGWTWLVKKSDGSVDIVNTGAAGNPLLDGH-KPLLTCDVWEHAYYIDYRNARPKYVEAFWNLVNW 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8053.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V2G5_9STRA2.420e-6472.57Superoxide dismutase n=1 Tax=Fibrocapsa japonica T... [more]
D8LI17_ECTSI1.180e-6272.57Superoxide dismutase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A6V1U4U1_HETAK1.420e-6071.68Superoxide dismutase n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZFU3_9STRA4.980e-6071.68Superoxide dismutase n=1 Tax=Tribonema minus TaxID... [more]
W7T7U7_9STRA2.470e-5770.80Superoxide dismutase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A0G4GGW9_VITBC9.060e-5766.37Superoxide dismutase n=2 Tax=Vitrella brassicaform... [more]
A0A7C7YMU4_9ARCH5.890e-5568.14Superoxide dismutase n=2 Tax=Archaea TaxID=2157 Re... [more]
A0A7C5EH16_9BACT2.310e-5467.26Superoxide dismutase n=1 Tax=Planctomycetes bacter... [more]
A0A0G4G4J6_VITBC7.480e-5463.72Superoxide dismutase n=1 Tax=Vitrella brassicaform... [more]
A0A4R6UMV6_9GAMM1.370e-5367.26Superoxide dismutase n=1 Tax=Permianibacter aggreg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8053contigP-wetherbeei_contig8053:137..734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LI17
Preferred nameSODB1
PFAMsSod_Fe_C,Sod_Fe_N
Model size348
Max annot lvl2759|Eukaryota
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.81e-57
EggNOG OGsCOG0605@1|root,KOG0876@2759|Eukaryota
EC1.15.1.1
Descriptionoxidoreductase activity, acting on superoxide radicals as acceptor
Cds size324
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187017.5300467-UTR-P-wetherbeei_contig8053:136..1601683187017.5300467-UTR-P-wetherbeei_contig8053:136..160Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8053 137..160 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187017.54239-CDS-P-wetherbeei_contig8053:160..2621683187017.54239-CDS-P-wetherbeei_contig8053:160..262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8053 161..262 +
1683187017.5526543-CDS-P-wetherbeei_contig8053:512..7341683187017.5526543-CDS-P-wetherbeei_contig8053:512..734Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8053 513..734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8053.1.1prot_P-wetherbeei_contig8053.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8053 161..734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8053.1.1

>prot_P-wetherbeei_contig8053.1.1 ID=prot_P-wetherbeei_contig8053.1.1|Name=mRNA_P-wetherbeei_contig8053.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MSPTGGGKPTGALAEAIDASFGSFDAFKQKFSDEAGGHFGSGWAWLVKKS
DGALGVVGTHDASNPLVEGKGKPLMTCDVWEHAFYIDYRNAKPAYIAAWW
SLVNWCD*
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mRNA from alignment at P-wetherbeei_contig8053:137..734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8053.1.1 ID=mRNA_P-wetherbeei_contig8053.1.1|Name=mRNA_P-wetherbeei_contig8053.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=598bp|location=Sequence derived from alignment at P-wetherbeei_contig8053:137..734+ (Phaeothamnion wetherbeei SAG_119_79)
AACCACAACTTCTACTGGCAGTCTATGTCGCCTACCGGCGGCGGCAAACC CACCGGCGCCCTCGCCGAGGCCATCGATGCGTCCTTCGGCAGCTTTGACG CCTTCAAGCAGAAGTTCAGCGACGAGGTGACAGAGCGGAAAAGGAAGGAG ACCGTCAGATTCCCTTCCTCTCGCGATTTCGCCAACTCCGCAATGCCATA ACGTAATAAGTGACCCGGGTTTGTTTCTCAAACGAAACAAGGAGACGATG GCTAATTTAGAGCTGATTTTAAATTTGGGAAGGCACATTCGACCTTCGGT TTTCGATGTGCCTCCGTTCCTATCTCCGACTCTTTTCTGCAATTCCCGCA CTCTCTCCTTGCGTGCGCAAGCGCAGGCTGGGGGGCACTTCGGCAGTGGG TGGGCATGGCTGGTGAAGAAGAGCGATGGCGCACTGGGAGTGGTGGGCAC GCACGACGCCAGCAACCCGCTGGTGGAGGGCAAGGGCAAGCCGCTCATGA CGTGCGACGTTTGGGAGCACGCCTTCTACATCGACTACCGCAATGCCAAG CCCGCCTACATTGCCGCGTGGTGGAGCCTCGTCAACTGGTGCGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8053:137..734+

>mRNA_P-wetherbeei_contig8053.1.1 ID=mRNA_P-wetherbeei_contig8053.1.1|Name=mRNA_P-wetherbeei_contig8053.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig8053:137..734+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCCTACCGGCGGCGGCAAACCCACCGGCGCCCTCGCCGAGGCCAT
CGATGCGTCCTTCGGCAGCTTTGACGCCTTCAAGCAGAAGTTCAGCGACG
AGGCTGGGGGGCACTTCGGCAGTGGGTGGGCATGGCTGGTGAAGAAGAGC
GATGGCGCACTGGGAGTGGTGGGCACGCACGACGCCAGCAACCCGCTGGT
GGAGGGCAAGGGCAAGCCGCTCATGACGTGCGACGTTTGGGAGCACGCCT
TCTACATCGACTACCGCAATGCCAAGCCCGCCTACATTGCCGCGTGGTGG
AGCCTCGTCAACTGGTGCGACTGA
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