mRNA_P-wetherbeei_contig8041.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8041.1.1
Unique NamemRNA_P-wetherbeei_contig8041.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8041.1.1 vs. uniprot
Match: D7G1N7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.000e-12
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:  133 DPRLCLLDDNAAALTGYVAHRAVFFERHWAKLVKDIARGRLDRRLPVSPRRRRRIEERMLPDPATAKALDRAFAALGFHARSSGRFGSAAATAA 414
            D RLCL    A  ++      AVF ERHW KL+KDI  G  D  LP+S   R R+E  M+P+   A+ LD    ALGFHAR+SG + +AA+ +A
Sbjct: 1043 DGRLCL----APVMSKKELRHAVFLERHWCKLIKDIRNGATDPHLPISEAERMRVEGLMIPNKKRAQRLDDRLRALGFHARASGIYKTAASASA 1132
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8041.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1N7_ECTSI2.000e-1245.74C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8041contigP-wetherbeei_contig8041:448..1074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009036825.1
PFAMsIQ
Model size519
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.2e-23
EggNOG OGs28K9S@1|root,2QSQH@2759|Eukaryota
DescriptionShort calmodulin-binding motif containing conserved Ile and Gln residues.
Cds size519
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187017.1038866-CDS-P-wetherbeei_contig8041:447..9051683187017.1038866-CDS-P-wetherbeei_contig8041:447..905Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8041 448..905 -
1683187017.1167617-CDS-P-wetherbeei_contig8041:1013..10741683187017.1167617-CDS-P-wetherbeei_contig8041:1013..1074Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8041 1014..1074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8041.1.1prot_P-wetherbeei_contig8041.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8041 448..1074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8041.1.1

>prot_P-wetherbeei_contig8041.1.1 ID=prot_P-wetherbeei_contig8041.1.1|Name=mRNA_P-wetherbeei_contig8041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
TQSRHELQHGFALSEAAPLVGGAEELWHMTDATGLYLRMLDEIRDPRLCL
LDDNAAALTGYVAHRAVFFERHWAKLVKDIARGRLDRRLPVSPRRRRRIE
ERMLPDPATAKALDRAFAALGFHARSSGRFGSAAATAAAVAHGSGGSAAA
ASSKAAGGAAPTNAAVAGAGAGS
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mRNA from alignment at P-wetherbeei_contig8041:448..1074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8041.1.1 ID=mRNA_P-wetherbeei_contig8041.1.1|Name=mRNA_P-wetherbeei_contig8041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=627bp|location=Sequence derived from alignment at P-wetherbeei_contig8041:448..1074- (Phaeothamnion wetherbeei SAG_119_79)
ACACAGAGCCGTCACGAGCTGCAGCACGGCTTCGCGCTCTCAGAGGCGGC
CCCGCTCGTCGGTCCGTCTGCCGCTGCTGCTACTTCTGGTGGCCATCATG
GTAGCGGCAGCGGCGGCGCCGGCGCCGGCAACCATAACGGTGGCCATAAC
GATGGCTGCGGTGGCGGAGGTGGCGCCGAAGAGCTCTGGCATATGACGGA
TGCCACCGGACTCTATCTCCGCATGCTCGACGAGATCCGCGACCCGCGGC
TCTGCCTGCTTGATGACAACGCCGCCGCTCTGACGGGTTACGTGGCCCAC
CGCGCCGTCTTCTTCGAGCGGCACTGGGCCAAGCTGGTCAAAGACATCGC
CCGCGGCCGGCTGGACCGCCGCCTGCCGGTATCGCCCCGGCGGCGGCGTC
GCATCGAGGAGCGGATGCTGCCGGACCCCGCGACGGCCAAAGCGCTTGAC
CGCGCCTTCGCGGCGCTCGGCTTCCACGCGCGGTCATCGGGACGATTCGG
CTCCGCAGCGGCAACTGCTGCAGCGGTAGCTCACGGCAGCGGTGGCAGCG
CCGCCGCCGCTTCTTCCAAGGCTGCGGGCGGTGCTGCTCCCACCAATGCC
GCTGTCGCCGGCGCCGGCGCTGGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8041:448..1074-

>mRNA_P-wetherbeei_contig8041.1.1 ID=mRNA_P-wetherbeei_contig8041.1.1|Name=mRNA_P-wetherbeei_contig8041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig8041:448..1074- (Phaeothamnion wetherbeei SAG_119_79)
ACACAGAGCCGTCACGAGCTGCAGCACGGCTTCGCGCTCTCAGAGGCGGC
CCCGCTCGTCGGTGGCGCCGAAGAGCTCTGGCATATGACGGATGCCACCG
GACTCTATCTCCGCATGCTCGACGAGATCCGCGACCCGCGGCTCTGCCTG
CTTGATGACAACGCCGCCGCTCTGACGGGTTACGTGGCCCACCGCGCCGT
CTTCTTCGAGCGGCACTGGGCCAAGCTGGTCAAAGACATCGCCCGCGGCC
GGCTGGACCGCCGCCTGCCGGTATCGCCCCGGCGGCGGCGTCGCATCGAG
GAGCGGATGCTGCCGGACCCCGCGACGGCCAAAGCGCTTGACCGCGCCTT
CGCGGCGCTCGGCTTCCACGCGCGGTCATCGGGACGATTCGGCTCCGCAG
CGGCAACTGCTGCAGCGGTAGCTCACGGCAGCGGTGGCAGCGCCGCCGCC
GCTTCTTCCAAGGCTGCGGGCGGTGCTGCTCCCACCAATGCCGCTGTCGC
CGGCGCCGGCGCTGGCAGC
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