mRNA_P-wetherbeei_contig804.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig804.1.1
Unique NamemRNA_P-wetherbeei_contig804.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Match: F0X2A8_9STRA (Uncharacterized protein AlNc14C933G12648 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2A8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.700e-11
Identity = 47/131 (35.88%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 HRVDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFARQHQIENFLKAFSVSRGIELPLAENVTCDEETLPPLALPPRAGRPSTLRFVSAWESSGGHVSKKQRTCSKCNARGHNTRTCT 393
             RV++  K CSC++ DQ+G+PC+H IA     +    RD  E   +AF   +Q E F   +   + IELPL + +   +   PP       GR    R +S  E++G   SK+ R CSKC   GHN +TC+
Sbjct:  143 RRVNIEEKYCSCMYMDQLGIPCQHFIAVLRFFR----RD--EELYSAFNLCYQFECFAAGYG-GKSIELPLFKELEKRDYHKPPNTTV-LLGRQRERRILSQGENAG--RSKRIRCCSKCKRPGHNKQTCS 263          
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Match: A0A3Q0EIE1_VIGRR (uncharacterized protein LOC111240565 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A3Q0EIE1_VIGRR)

HSP 1 Score: 69.3 bits (168), Expect = 1.770e-11
Identity = 46/132 (34.85%), Postives = 66/132 (50.00%), Query Frame = 1
Query:    7 VDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFARQHQIENFLKAFSVSRGIEL-PLAENVTCDEETLPPLALPPRAGRPSTLRFVSAWES-SGGHVSKKQ--RTCSKCNARGHNTRTC 390
            VDL   TC+C FWD +G+PCRHA+A  H +    + +  ++    + +      +    +   G +L P +++       LPP+   P  GRP  LR   A E  S   +SKKQ    CS CNA GHN R+C
Sbjct:   68 VDLSNHTCTCYFWDLVGIPCRHAVAAIHYK----LENPEQYVHPYYKKDAYRTCYAPIITPINGQQLWPTSDSAPL----LPPIYKTP-PGRPKKLRRREADEYVSHSKLSKKQIAMKCSSCNAYGHNVRSC 190          
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Match: UPI0019671F27 (uncharacterized protein LOC112417158 n=1 Tax=Medicago truncatula TaxID=3880 RepID=UPI0019671F27)

HSP 1 Score: 70.1 bits (170), Expect = 2.300e-11
Identity = 47/133 (35.34%), Postives = 63/133 (47.37%), Query Frame = 1
Query:    1 HRVDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFARQHQIENFLKAFSVSRGIELPLAENVTCDEETLPPLALPPRAGRPSTLRFVSAWESSGGHVSKKQRT---CSKCNARGHNTRTC 390
            + VD+G +TC+C FW  +G+PCRHAIA      G   +   ++    +AR      +    S   G ++    NV   EE LPP A     GRP  LR     E   G   K+Q T   C+KC   GHN R+C
Sbjct:  740 YIVDIGKRTCTCNFWQLVGIPCRHAIAAM----GKRSQRPEDYVDDCYARATYERCYSYGVSALNGEDM--WPNVDV-EEMLPP-AYKRGPGRPKKLRRREPDEDGNGRKYKRQCTRYRCTKCGQSGHNNRSC 864          
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Match: A0A396I2Q7_MEDTR (Putative transcription factor interactor and regulator CCHC(Zn) family n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A396I2Q7_MEDTR)

HSP 1 Score: 69.3 bits (168), Expect = 4.000e-11
Identity = 44/137 (32.12%), Postives = 64/137 (46.72%), Query Frame = 1
Query:    7 VDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFARQHQIENFLKAFSVSRGIELPLAENVTCDEETLPPLALPPR----AGRPSTLRFVSAWESSGGHVSKKQRT--CSKCNARGHNTRTCTAP 399
            VDL  +TCSC FWD +G+PCRHA+ +     G A+     +  T + ++  ++ + +  +   G ++          +T  P  LPP      GRP  LR     E S G+  +   T  C KC   GHN RTC  P
Sbjct:  249 VDLDKRTCSCNFWDLVGIPCRHAVVSI----GRALETPQSYVHTYYHKKTYLDCYDQTITPINGQKM--------WPKTELPYILPPNYKRGPGRPKKLRRREPDEGSQGNWKRNSTTHRCKKCLKYGHNARTCKVP 373          
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Match: F0VZ86_9STRA (Uncharacterized protein AlNc14C2G227 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZ86_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.570e-11
Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = 1
Query:    1 HRVDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFARQHQIENFLKAFSVSRGIELPLAENVTCDEETLPPLALPPRAGRPSTLRFVSAWESSGGHVSKKQRT---------CSKCNARGHNTRTCT 393
             +VDL  K CSC+ ++Q G+PCRH +A  H ++  A+ +A  +F   +    ++ ++   F  ++ +E PL E +  DE  LPP        R  T   +S    +G    K++R          CS CN+  HN RTC+
Sbjct:  536 RKVDLAQKYCSCLLFNQHGVPCRHIVAALHWKK--ALGNAYSFFDPCY----RVASYANTFR-NKWLEFPLHEELERDESLLPP--------RKRTSTKLSNTCENGSIPKKRKRVNAKHVRTYKCSNCNSLDHNRRTCS 660          
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Match: UPI001017117A (uncharacterized protein LOC114165477 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=UPI001017117A)

HSP 1 Score: 67.8 bits (164), Expect = 1.440e-10
Identity = 46/131 (35.11%), Postives = 64/131 (48.85%), Query Frame = 1
Query:    7 VDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFARQHQIENFLKAFSVSRGIELPLAENVTCDEETLPPLALPPRAGRPSTLRFVSAWES-SGGHVSKKQ--RTCSKCNARGHNTRTC 390
            VDL   TC+C FWD +G+PCRHA+A  + +    I +   +    + RQ     +    +   G +L    N   + E  PP+   P  GRP  LR   A E+ S   +SKK     CS+CN  GHN R+C
Sbjct:  601 VDLSKHTCTCYFWDLVGIPCRHAVAAINYK----IENPEAYVHPCYKRQAYHACYSPEITPINGQQLWPRSN---EPELFPPIYKTP-PGRPKKLRRREADENVSHSKLSKKNLIMKCSRCNQIGHNIRSC 723          
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Match: A0A1S3TFL2_VIGRR (uncharacterized protein LOC106754991 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3TFL2_VIGRR)

HSP 1 Score: 66.6 bits (161), Expect = 3.200e-10
Identity = 46/132 (34.85%), Postives = 65/132 (49.24%), Query Frame = 1
Query:    7 VDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFARQHQIENFLKAFSVSRGIEL-PLAENVTCDEETLPPLALPPRAGRPSTLRFVSAWES-SGGHVSKKQ--RTCSKCNARGHNTRTC 390
            VDL   TC+C FWD +G+PCRHA+AT H +    +    ++    + +      +    +   G +L P +E+       LP +   P  GRP+ LR     E  S   +SKKQ    CS CNA GHN R+C
Sbjct:  205 VDLSNHTCTCYFWDLVGIPCRHAVATIHYK----LEIPEQYVHPYYKKDAYRTCYAPIITPINGQQLWPTSESAPL----LPSIYKTP-LGRPNKLRRRETDEYVSHSKLSKKQIAMKCSSCNAYGHNVRSC 327          
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Match: UPI00101668AD (uncharacterized protein LOC114196170 n=1 Tax=Vigna unguiculata TaxID=3917 RepID=UPI00101668AD)

HSP 1 Score: 65.5 bits (158), Expect = 4.800e-10
Identity = 44/131 (33.59%), Postives = 64/131 (48.85%), Query Frame = 1
Query:    7 VDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFARQHQIENFLKAFSVSRGIELPLAENVTCDEETLPPLALPPRAGRPSTLRFVSAWES-SGGHVSKKQRT--CSKCNARGHNTRTC 390
            VDL   +CSC FW+ +G+PCRH +AT + +    + +  ++    + R     ++    +   G +L    N   + E LPP+   P  GRP  LR   A E  S   +SKK     CSKC   GHN R+C
Sbjct:   68 VDLSNHSCSCYFWNLVGIPCRHVVATINYK----VENPEDYVHAYYKRDAYQASYGPQITPINGQQLWPKTN---EPELLPPIYKTP-PGRPKKLRRREADEHVSHSKLSKKNTIIKCSKCKQLGHNIRSC 190          
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Match: A0A2Z6M744_TRISU (SWIM-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6M744_TRISU)

HSP 1 Score: 66.2 bits (160), Expect = 4.960e-10
Identity = 41/131 (31.30%), Postives = 62/131 (47.33%), Query Frame = 1
Query:    7 VDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFARQHQIENFLKAFSVSRGIELPLAENVTCDEETLPPLALPPRAGRPSTLRFVSAWESSGGHVSKKQRTCSKCNARGHNTRTCTAP 399
            V+   KTC+C FW+ +G+PCRHA+ T  + QG   +D L++    ++R+     +  A S   G+++        +E  LPPL      GRP  LR     E       K +  C+ C   GHN  +C  P
Sbjct:  605 VNTAKKTCTCNFWELVGIPCRHAV-TAISYQG---KDPLDYVDNCYSREKYAACYGFAISAINGVDMWPKPPDGVEENILPPL-YKKGPGRPRKLRIREFDEVGVRKPRKGKYHCTTCGHPGHNVGSCKLP 730          
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Match: A0A1S3U0L5_VIGRR (uncharacterized protein LOC106760651 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3U0L5_VIGRR)

HSP 1 Score: 65.9 bits (159), Expect = 6.430e-10
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = 1
Query:    7 VDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFARQHQIENFLKAFSVSRGIEL-PLAENVTCDEETLPPLALPPRAGRPSTLRFVSAWES-SGGHVSKKQ--RTCSKCNARGHNTRTC 390
            VD+   +CSC FWD +G+PCRHA+A  H +    + +  ++    + ++     +        G +L P +E     E  LPP+   P  GRP  LR   A E  S   +SKK     CS C+A GHN R+C
Sbjct:  349 VDVSNHSCSCYFWDLVGIPCRHAVAAIHYK----LENPEDYVHPYYKKEAYQTCYAPQIIPINGQQLWPRSET----EPLLPPIYKTP-PGRPKKLRRREADEYVSHSKLSKKNIGMKCSSCHAYGHNVRSC 471          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig804.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0X2A8_9STRA1.700e-1135.88Uncharacterized protein AlNc14C933G12648 n=1 Tax=A... [more]
A0A3Q0EIE1_VIGRR1.770e-1134.85uncharacterized protein LOC111240565 n=1 Tax=Vigna... [more]
UPI0019671F272.300e-1135.34uncharacterized protein LOC112417158 n=1 Tax=Medic... [more]
A0A396I2Q7_MEDTR4.000e-1132.12Putative transcription factor interactor and regul... [more]
F0VZ86_9STRA5.570e-1130.71Uncharacterized protein AlNc14C2G227 n=1 Tax=Albug... [more]
UPI001017117A1.440e-1035.11uncharacterized protein LOC114165477 n=1 Tax=Vigna... [more]
A0A1S3TFL2_VIGRR3.200e-1034.85uncharacterized protein LOC106754991 n=1 Tax=Vigna... [more]
UPI00101668AD4.800e-1033.59uncharacterized protein LOC114196170 n=1 Tax=Vigna... [more]
A0A2Z6M744_TRISU4.960e-1031.30SWIM-type domain-containing protein n=1 Tax=Trifol... [more]
A0A1S3U0L5_VIGRR6.430e-1034.09uncharacterized protein LOC106760651 n=1 Tax=Vigna... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig804contigP-wetherbeei_contig804:290..691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4787.PITG_15719T0
PFAMsSWIM
Model size402
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.49e-13
EggNOG OGs2F0F0@1|root,2T1KR@2759|Eukaryota
DescriptionSWIM zinc finger
Cds size402
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187016.9318466-CDS-P-wetherbeei_contig804:289..6911683187016.9318466-CDS-P-wetherbeei_contig804:289..691Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig804 290..691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig804.1.1prot_P-wetherbeei_contig804.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig804 290..691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig804.1.1

>prot_P-wetherbeei_contig804.1.1 ID=prot_P-wetherbeei_contig804.1.1|Name=mRNA_P-wetherbeei_contig804.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
HRVDLGGKTCSCIFWDQIGMPCRHAIATKHAEQGGAIRDALEWFTTAFAR
QHQIENFLKAFSVSRGIELPLAENVTCDEETLPPLALPPRAGRPSTLRFV
SAWESSGGHVSKKQRTCSKCNARGHNTRTCTAP*
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mRNA from alignment at P-wetherbeei_contig804:290..691-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig804.1.1 ID=mRNA_P-wetherbeei_contig804.1.1|Name=mRNA_P-wetherbeei_contig804.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig804:290..691- (Phaeothamnion wetherbeei SAG_119_79)
CACCGTGTCGATCTCGGAGGCAAGACCTGCTCCTGCATCTTCTGGGACCA GATCGGCATGCCATGCCGCCATGCAATTGCTACAAAGCACGCGGAGCAAG GCGGCGCCATCAGGGATGCACTGGAATGGTTCACCACTGCCTTTGCCCGG CAGCACCAGATCGAGAACTTCCTGAAGGCCTTCTCCGTCAGCCGCGGCAT CGAGCTTCCTCTCGCGGAGAATGTTACCTGCGACGAGGAAACGCTTCCAC CGCTGGCGCTTCCGCCGCGCGCTGGCCGCCCGAGCACTCTCCGATTCGTC AGTGCCTGGGAGAGTTCTGGTGGGCACGTCAGCAAGAAGCAACGTACATG CAGCAAGTGCAACGCTCGCGGGCACAATACACGCACTTGCACGGCACCGT AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig804:290..691-

>mRNA_P-wetherbeei_contig804.1.1 ID=mRNA_P-wetherbeei_contig804.1.1|Name=mRNA_P-wetherbeei_contig804.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig804:290..691- (Phaeothamnion wetherbeei SAG_119_79)
CACCGTGTCGATCTCGGAGGCAAGACCTGCTCCTGCATCTTCTGGGACCA
GATCGGCATGCCATGCCGCCATGCAATTGCTACAAAGCACGCGGAGCAAG
GCGGCGCCATCAGGGATGCACTGGAATGGTTCACCACTGCCTTTGCCCGG
CAGCACCAGATCGAGAACTTCCTGAAGGCCTTCTCCGTCAGCCGCGGCAT
CGAGCTTCCTCTCGCGGAGAATGTTACCTGCGACGAGGAAACGCTTCCAC
CGCTGGCGCTTCCGCCGCGCGCTGGCCGCCCGAGCACTCTCCGATTCGTC
AGTGCCTGGGAGAGTTCTGGTGGGCACGTCAGCAAGAAGCAACGTACATG
CAGCAAGTGCAACGCTCGCGGGCACAATACACGCACTTGCACGGCACCGT
AG
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