mRNA_P-wetherbeei_contig12930.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12930.1.1
Unique NamemRNA_P-wetherbeei_contig12930.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12930.1.1 vs. uniprot
Match: A0A835YW21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW21_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.110e-14
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 PDGVVLARLSTRTLLLKIWKPAYYIFD-DGTLFVYRSFNDYYRAPRGGSIKKLIRIKDSHVLTPLKHK 201
            PDG  LAR+S RTLL+K WKP Y+IF+    L +YRS  DY   P+G  IKK I I+ SH LTPLK K
Sbjct:  158 PDGECLARISKRTLLVKAWKPTYFIFELADLLLLYRSREDYIYHPKGTCIKKRIEIRHSHTLTPLKRK 225
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BLAST of mRNA_P-wetherbeei_contig12930.1.1 vs. uniprot
Match: A0A6V1S9Y9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S9Y9_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 1.300e-9
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    4 DGVVLARLSTRTLLLKIWKPAYYIF-DDGTLFVYRSFNDYYRAPRGGSIKKLIRIKDSHVLTPLKHK 201
             G VLAR+S RTLL+K WKP Y++F    TL +YRS N++   PRG  +KK I I  +H  T +K K
Sbjct:   13 QGEVLARISMRTLLVKEWKPTYWVFLGRQTLGLYRSKNEFLYNPRGQGMKKKIVINQNHTCTAIKRK 79
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BLAST of mRNA_P-wetherbeei_contig12930.1.1 vs. uniprot
Match: A0A7S1U4J7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4J7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.170e-8
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 PDGVVLARLSTRTLLLKIWKPAYYIFDDG-TLFVYRSFNDYYRAPRGGSIKKLIRIKDSHVLTPLKHK 201
            P GVVLARLS R+L++K W+P ++IFDD  T+ +YR+  D+   P+G +IK  I I  + ++  +K K
Sbjct:  229 PQGVVLARLSLRSLVVKSWRPTFWIFDDEKTVLLYRNRQDWLLNPKGTAIKARINIGHNFIVGEVKFK 296
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BLAST of mRNA_P-wetherbeei_contig12930.1.1 vs. uniprot
Match: W7TG28_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG28_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.030e-8
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    1 PDGVVLARLSTRTLLLKIWKPAYYIFDDGTLFVYRSFNDYY-----RAPRGGSIKKLIRIKDSHVLTPLKHKV 204
            PDGVVLAR+S R+++ + WKP Y++  +  L++YRS  DYY     + P    IKK I +++S  LT +K+K+
Sbjct:  257 PDGVVLARVSARSIIGREWKPVYWVIVNRRLWIYRSKADYYPTDYIKDPFNKRIKKCIPLRESLQLTCIKNKL 329
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BLAST of mRNA_P-wetherbeei_contig12930.1.1 vs. uniprot
Match: A0A4D9DD66_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD66_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.560e-8
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 PDGVVLARLSTRTLLLKIWKPAYYIFDDGTLFVYRSFNDYY-----RAPRGGSIKKLIRIKDSHVLTPLKHKV 204
            PDGVVLAR+S R+++ + WKP Y++  +  L++YRS  DYY     + P    IKK I ++ S  LT +K+K+
Sbjct:  257 PDGVVLARVSARSIIGREWKPVYWVIVNRRLWIYRSKADYYPTDYIKDPFNKRIKKCIPLRQSLQLTCIKNKL 329
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12930.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YW21_9STRA4.110e-1457.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1S9Y9_HETAK1.300e-949.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1U4J7_9STRA2.170e-844.12Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TG28_9STRA3.030e-842.47Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9DD66_9STRA5.560e-842.47Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12930contigP-wetherbeei_contig12930:472..675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.9764514-CDS-P-wetherbeei_contig12930:471..6751683185966.9764514-CDS-P-wetherbeei_contig12930:471..675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12930 472..675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12930.1.1prot_P-wetherbeei_contig12930.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12930 472..675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12930.1.1

>prot_P-wetherbeei_contig12930.1.1 ID=prot_P-wetherbeei_contig12930.1.1|Name=mRNA_P-wetherbeei_contig12930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
PDGVVLARLSTRTLLLKIWKPAYYIFDDGTLFVYRSFNDYYRAPRGGSIK
KLIRIKDSHVLTPLKHKV
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mRNA from alignment at P-wetherbeei_contig12930:472..675-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12930.1.1 ID=mRNA_P-wetherbeei_contig12930.1.1|Name=mRNA_P-wetherbeei_contig12930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig12930:472..675- (Phaeothamnion wetherbeei SAG_119_79)
CCGGACGGGGTAGTGCTAGCGCGGCTGTCGACGCGAACCCTGCTCCTGAA
GATCTGGAAGCCCGCGTATTACATTTTCGACGACGGCACCCTGTTCGTGT
ACCGCTCCTTCAATGACTACTACCGCGCTCCGCGTGGCGGCTCCATCAAA
AAGCTGATTCGGATCAAGGACAGCCACGTCCTCACGCCGCTGAAGCACAA
GGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12930:472..675-

>mRNA_P-wetherbeei_contig12930.1.1 ID=mRNA_P-wetherbeei_contig12930.1.1|Name=mRNA_P-wetherbeei_contig12930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig12930:472..675- (Phaeothamnion wetherbeei SAG_119_79)
CCGGACGGGGTAGTGCTAGCGCGGCTGTCGACGCGAACCCTGCTCCTGAA
GATCTGGAAGCCCGCGTATTACATTTTCGACGACGGCACCCTGTTCGTGT
ACCGCTCCTTCAATGACTACTACCGCGCTCCGCGTGGCGGCTCCATCAAA
AAGCTGATTCGGATCAAGGACAGCCACGTCCTCACGCCGCTGAAGCACAA
GGTG
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