mRNA_P-wetherbeei_contig803.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig803.3.1
Unique NamemRNA_P-wetherbeei_contig803.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig803.3.1 vs. uniprot
Match: UPI00071D5A8D (probable E3 ubiquitin-protein ligase XBOS36 isoform X2 n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI00071D5A8D)

HSP 1 Score: 58.5 bits (140), Expect = 1.760e-5
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1 
Query: 1114 IVAMLLDNGADIEAREAAGLTPFLAACAAGRLDVARSLAAQGADLGAADG-TGRGALELAAAQGNTRLVRFLISAA 1338
            I A+LL+NGAD  AR   G TP + AC +G  +V ++L A G ++  ADG +GR AL +AAA G+ R VR L++ A
Sbjct:   62 IAALLLENGADANARNLCGQTPLIQACRSGHWEVVQTLLAFGCNVWRADGLSGRTALHVAAAGGHVRCVRLLLAGA 137
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BLAST of mRNA_P-wetherbeei_contig803.3.1 vs. uniprot
Match: A0A0Q3S368_BRADI (RING-type domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3S368_BRADI)

HSP 1 Score: 58.5 bits (140), Expect = 1.960e-5
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1 
Query: 1114 IVAMLLDNGADIEAREAAGLTPFLAACAAGRLDVARSLAAQGADLGAADG-TGRGALELAAAQGNTRLVRFLISAA 1338
            I A+LL+NGAD  AR   G TP + AC +G  +V ++L A G ++  ADG +GR AL +AAA G+ R VR L++ A
Sbjct:   62 IAALLLENGADANARNLCGQTPLIQACRSGHWEVVQTLLAFGCNVWRADGLSGRTALHVAAAGGHVRCVRLLLAGA 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig803.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00071D5A8D1.760e-547.37probable E3 ubiquitin-protein ligase XBOS36 isofor... [more]
A0A0Q3S368_BRADI1.960e-547.37RING-type domain-containing protein n=1 Tax=Brachy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig803contigP-wetherbeei_contig803:5242..6987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1747
Hectar predicted targeting categoryother localisation
Exons1
Cds size1563
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187016.619985-UTR-P-wetherbeei_contig803:5241..54241683187016.619985-UTR-P-wetherbeei_contig803:5241..5424Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig803 5242..5424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187016.6304812-CDS-P-wetherbeei_contig803:5424..69871683187016.6304812-CDS-P-wetherbeei_contig803:5424..6987Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig803 5425..6987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig803.3.1prot_P-wetherbeei_contig803.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig803 5425..6987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig803.3.1

>prot_P-wetherbeei_contig803.3.1 ID=prot_P-wetherbeei_contig803.3.1|Name=mRNA_P-wetherbeei_contig803.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=521bp
MHNRRITFDSGHTDGGALASTRSFLDRSSKIEGRKHTQHHRRSTGEEHAS
TPQSYIGIPRGSGSLRTLASTGSSASRNASRSVREACRAARQGHLALLRE
LLATGLDPNTSDDYGVSLLHHAAEGGHCNVAWLLLRAGARLDRRDYSGDT
PLFAACFSGNLEAVRFLVEKRASLAIRDSSGMDALHHASLAGEVKVVHFL
LRQGADITTTDAGGSTALHHACAAGRREVASLLVSRGAPVRVCDHRSCTP
LHMCAGIGGIFPSNGGGSSRRGGGGSSGGGSSGAGGGTDGNSSAGTRAAD
AGTLALSAAPIVAMLLDNGADIEAREAAGLTPFLAACAAGRLDVARSLAA
QGADLGAADGTGRGALELAAAQGNTRLVRFLISAALGSVDVRHHSGGRRS
GGGGTGRNSGNCSDGDYGSRGCGASSVGDYGAFISAGVGPDSTGKHGRAA
LAAIAAALRIPLAQALLHGNLDAARVLAVEKRAAEFALGAAEADDSAMGR
SSGGGGCAVNDGGGGGAGAPA
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mRNA from alignment at P-wetherbeei_contig803:5242..6987+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig803.3.1 ID=mRNA_P-wetherbeei_contig803.3.1|Name=mRNA_P-wetherbeei_contig803.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1746bp|location=Sequence derived from alignment at P-wetherbeei_contig803:5242..6987+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGAGCCCCTCGATGCAAAGAGAACCAGAAGGGCGTGCATTCCAGGAC
ACGGGGGAAGAGGAAAGGCACACTCAAAGCGTCCCGCTCAGCAGGCAGAA
AGGCGCCGCGAAGTTCCTGAACATCAAAATCCTGCCACAGAAAAAAGTGG
AAGGAGCGACCCCTCCTCTTCCTCCTTTTGTCAATGCACAATCGGCGCAT
AACATTCGACAGCGGGCACACAGACGGCGGTGCGCTTGCTTCGACGCGAT
CGTTCCTTGATAGGTCGTCGAAGATCGAGGGAAGGAAGCATACCCAACAT
CACCGCCGGTCAACGGGAGAAGAGCATGCCTCTACCCCGCAATCCTATAT
TGGGATTCCTAGGGGGAGCGGGAGCCTTCGAACCCTTGCGTCAACTGGTT
CCTCTGCGAGCCGCAACGCCTCGCGCAGCGTGCGCGAAGCCTGCAGGGCT
GCAAGGCAAGGCCACCTTGCCCTTCTGAGGGAGCTCTTAGCAACGGGGCT
CGATCCAAACACGTCCGATGACTATGGCGTTTCTCTGCTTCATCACGCCG
CCGAGGGAGGTCACTGCAACGTGGCCTGGCTGCTCCTCAGGGCGGGAGCG
AGACTCGACCGCCGCGACTACAGCGGCGACACGCCGCTCTTTGCCGCCTG
CTTCAGCGGTAACCTCGAGGCCGTCCGGTTTCTCGTCGAAAAGCGGGCCA
GCCTCGCCATCCGCGACTCCTCGGGGATGGACGCGCTGCATCACGCCAGC
CTCGCCGGCGAAGTGAAAGTGGTGCACTTCCTCCTCCGTCAGGGCGCCGA
CATCACCACGACGGACGCCGGCGGGAGCACCGCGCTTCACCACGCCTGCG
CCGCCGGCCGCCGCGAAGTCGCGTCGCTTCTCGTCTCCCGCGGTGCCCCT
GTGCGCGTCTGCGACCACCGCAGCTGCACGCCGCTGCACATGTGCGCCGG
CATCGGCGGCATCTTCCCCAGCAACGGCGGTGGGTCCAGCCGCCGCGGCG
GCGGCGGCAGTAGCGGCGGCGGTAGTAGCGGCGCTGGCGGCGGCACCGAC
GGGAACAGCAGTGCCGGCACACGGGCGGCGGACGCGGGCACGCTGGCTCT
ATCGGCTGCTCCGATCGTCGCCATGCTGCTTGACAACGGCGCCGACATTG
AGGCCCGCGAGGCCGCGGGGCTGACGCCGTTCCTGGCCGCCTGTGCCGCC
GGCCGGCTGGATGTGGCGCGGTCGCTGGCCGCGCAGGGCGCGGACCTCGG
CGCGGCGGACGGTACCGGCCGCGGGGCGCTGGAACTGGCGGCCGCGCAGG
GCAACACGCGGCTCGTGCGCTTCCTCATCTCGGCGGCACTGGGCAGTGTT
GACGTGAGGCACCACAGCGGCGGCCGGAGGAGCGGCGGCGGCGGCACAGG
CCGCAACAGCGGGAACTGCAGCGACGGCGATTACGGGAGCCGCGGCTGCG
GCGCCAGCTCTGTCGGCGACTACGGCGCGTTTATCAGCGCCGGGGTGGGC
CCGGACAGTACAGGAAAGCACGGGCGAGCGGCGTTGGCGGCGATCGCAGC
GGCGCTGCGGATCCCGCTGGCGCAGGCGCTCCTGCACGGAAACTTGGACG
CTGCGCGTGTCTTGGCCGTTGAGAAGCGCGCCGCCGAGTTTGCTTTGGGA
GCAGCAGAAGCGGATGACAGTGCCATGGGCAGAAGTAGCGGCGGCGGCGG
CTGCGCCGTGAACGATGGCGGCGGCGGTGGCGCCGGCGCGCCCGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig803:5242..6987+

>mRNA_P-wetherbeei_contig803.3.1 ID=mRNA_P-wetherbeei_contig803.3.1|Name=mRNA_P-wetherbeei_contig803.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1563bp|location=Sequence derived from alignment at P-wetherbeei_contig803:5242..6987+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACAATCGGCGCATAACATTCGACAGCGGGCACACAGACGGCGGTGC
GCTTGCTTCGACGCGATCGTTCCTTGATAGGTCGTCGAAGATCGAGGGAA
GGAAGCATACCCAACATCACCGCCGGTCAACGGGAGAAGAGCATGCCTCT
ACCCCGCAATCCTATATTGGGATTCCTAGGGGGAGCGGGAGCCTTCGAAC
CCTTGCGTCAACTGGTTCCTCTGCGAGCCGCAACGCCTCGCGCAGCGTGC
GCGAAGCCTGCAGGGCTGCAAGGCAAGGCCACCTTGCCCTTCTGAGGGAG
CTCTTAGCAACGGGGCTCGATCCAAACACGTCCGATGACTATGGCGTTTC
TCTGCTTCATCACGCCGCCGAGGGAGGTCACTGCAACGTGGCCTGGCTGC
TCCTCAGGGCGGGAGCGAGACTCGACCGCCGCGACTACAGCGGCGACACG
CCGCTCTTTGCCGCCTGCTTCAGCGGTAACCTCGAGGCCGTCCGGTTTCT
CGTCGAAAAGCGGGCCAGCCTCGCCATCCGCGACTCCTCGGGGATGGACG
CGCTGCATCACGCCAGCCTCGCCGGCGAAGTGAAAGTGGTGCACTTCCTC
CTCCGTCAGGGCGCCGACATCACCACGACGGACGCCGGCGGGAGCACCGC
GCTTCACCACGCCTGCGCCGCCGGCCGCCGCGAAGTCGCGTCGCTTCTCG
TCTCCCGCGGTGCCCCTGTGCGCGTCTGCGACCACCGCAGCTGCACGCCG
CTGCACATGTGCGCCGGCATCGGCGGCATCTTCCCCAGCAACGGCGGTGG
GTCCAGCCGCCGCGGCGGCGGCGGCAGTAGCGGCGGCGGTAGTAGCGGCG
CTGGCGGCGGCACCGACGGGAACAGCAGTGCCGGCACACGGGCGGCGGAC
GCGGGCACGCTGGCTCTATCGGCTGCTCCGATCGTCGCCATGCTGCTTGA
CAACGGCGCCGACATTGAGGCCCGCGAGGCCGCGGGGCTGACGCCGTTCC
TGGCCGCCTGTGCCGCCGGCCGGCTGGATGTGGCGCGGTCGCTGGCCGCG
CAGGGCGCGGACCTCGGCGCGGCGGACGGTACCGGCCGCGGGGCGCTGGA
ACTGGCGGCCGCGCAGGGCAACACGCGGCTCGTGCGCTTCCTCATCTCGG
CGGCACTGGGCAGTGTTGACGTGAGGCACCACAGCGGCGGCCGGAGGAGC
GGCGGCGGCGGCACAGGCCGCAACAGCGGGAACTGCAGCGACGGCGATTA
CGGGAGCCGCGGCTGCGGCGCCAGCTCTGTCGGCGACTACGGCGCGTTTA
TCAGCGCCGGGGTGGGCCCGGACAGTACAGGAAAGCACGGGCGAGCGGCG
TTGGCGGCGATCGCAGCGGCGCTGCGGATCCCGCTGGCGCAGGCGCTCCT
GCACGGAAACTTGGACGCTGCGCGTGTCTTGGCCGTTGAGAAGCGCGCCG
CCGAGTTTGCTTTGGGAGCAGCAGAAGCGGATGACAGTGCCATGGGCAGA
AGTAGCGGCGGCGGCGGCTGCGCCGTGAACGATGGCGGCGGCGGTGGCGC
CGGCGCGCCCGCA
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