mRNA_P-wetherbeei_contig8022.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8022.2.1
Unique NamemRNA_P-wetherbeei_contig8022.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8022.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8022contigP-wetherbeei_contig8022:2175..2339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKI8
PFAMsC2,Copine,Dev_Cell_Death
Model size165
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010118,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090332,GO:1901700
Exons1
Evalue1.87e-05
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
Descriptionnegative regulation of response to water deprivation
Cds size165
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187016.3481052-CDS-P-wetherbeei_contig8022:2174..23391683187016.3481052-CDS-P-wetherbeei_contig8022:2174..2339Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8022 2175..2339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8022.2.1prot_P-wetherbeei_contig8022.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8022 2175..2339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8022.2.1

>prot_P-wetherbeei_contig8022.2.1 ID=prot_P-wetherbeei_contig8022.2.1|Name=mRNA_P-wetherbeei_contig8022.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
VYVAVFRTEVQEDADPMFNEIECDLRTLANGDALRPLRIQCFRHVRGGAK
HKLLG
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mRNA from alignment at P-wetherbeei_contig8022:2175..2339-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8022.2.1 ID=mRNA_P-wetherbeei_contig8022.2.1|Name=mRNA_P-wetherbeei_contig8022.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig8022:2175..2339- (Phaeothamnion wetherbeei SAG_119_79)
GTCTACGTGGCGGTGTTTCGCACGGAGGTGCAAGAAGACGCCGATCCCAT
GTTCAATGAGATTGAGTGTGACTTGCGGACGCTGGCGAACGGCGACGCAC
TGCGCCCGCTGCGGATCCAGTGCTTCCGGCACGTGCGCGGTGGCGCGAAG
CATAAGCTGCTGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8022:2175..2339-

>mRNA_P-wetherbeei_contig8022.2.1 ID=mRNA_P-wetherbeei_contig8022.2.1|Name=mRNA_P-wetherbeei_contig8022.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig8022:2175..2339- (Phaeothamnion wetherbeei SAG_119_79)
GTCTACGTGGCGGTGTTTCGCACGGAGGTGCAAGAAGACGCCGATCCCAT
GTTCAATGAGATTGAGTGTGACTTGCGGACGCTGGCGAACGGCGACGCAC
TGCGCCCGCTGCGGATCCAGTGCTTCCGGCACGTGCGCGGTGGCGCGAAG
CATAAGCTGCTGGGC
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