mRNA_P-wetherbeei_contig8021.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8021.1.1
Unique NamemRNA_P-wetherbeei_contig8021.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig8021.1.1 vs. uniprot
Match: A0A835YJN1_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJN1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.210e-6
Identity = 66/204 (32.35%), Postives = 101/204 (49.51%), Query Frame = 2 
Query:  380 TSSEALHQRESASYDAQKRRRPTTAERLEANRQRNRIXXXXXXERKKQRVQQLEDRSAKLQNECRSLQEHLDT-ARALLYLSFSNGXXXXXXXXXXXXXRSCVGDDASEDESWDQRSDSCDFDRDSSLDDDVEESMLEFSAPDFAAAVSVASLPAGDRERLRRERNRLHARKTRMRKKLVLEALERKVLVYERRVADLRLLLVQ 988
            T  +A HQ+        KR + +  ++L A+R+RNR+      +RKK R+  L+ R+ +L+ E   LQE +D  A A L L    G             R      A+ D++    +     D DS      +E  L    P   +   ++ L   +RE++RRERNRLHA++TR RKKLV + LER++ V E+ +  LR +L Q
Sbjct:   62 TDDDARHQQHEQGA-CSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDA----AGCAGTDVDSXXXXXXDEVELLDKLPAHLSC-DLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAILQQ 259
[Close]
BLAST of mRNA_P-wetherbeei_contig8021.1.1 vs. uniprot
Match: A0A7S2REX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REX0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.710e-5
Identity = 69/196 (35.20%), Postives = 100/196 (51.02%), Query Frame = 2 
Query:  422 DAQKRRRPTTAERLEANRQRNRIXXXXXXERKKQRVQQLEDRSAKLQNECRSLQEHLD---TARALLYLSFS--NGXXXXXXXXXXXXXRSCVGDDASEDESWDQRSDSCDFDRDSSLDDDVEESMLEFSAPDFAAAVSVASLPAGDRERLRRERNRLHARKTRMRKKLVLEALERKVLVYERRVADLRLLLVQAG 994
            D++KRRR ++ ERL+ +R+RNR+      +RKK +++ L+ R  +L+ E   L++ +D   TA  LL +S +  NG              S +G        +   S +    RD   +DD EE      AP           PA +RE +RRERNR+HA++TR RKKL LE  ERK+ V E   A LR  L + G
Sbjct:  184 DSKKRRRLSSEERLQRSRERNRMHAKKTRQRKKMQIEALQARIDELKTEFLGLRQIVDERYTAYILLVMSGAAENGSGASFLSSSAEGP-STLGS------KFTSASLAQIIGRDPDAEDDKEE------APQKRTRRRGKYTPA-EREHIRRERNRMHAKRTRDRKKLFLEESERKIAVMEEENAKLRDFLTRHG 365
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8021.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YJN1_9STRA3.210e-632.35BZIP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2REX0_9STRA1.710e-535.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8021contigP-wetherbeei_contig8021:1140..2816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1516
Hectar predicted targeting categoryother localisation
Exons2
Cds size1035
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187016.2881289-UTR-P-wetherbeei_contig8021:1139..14131683187016.2881289-UTR-P-wetherbeei_contig8021:1139..1413Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8021 1140..1413 +
1683187016.3168268-UTR-P-wetherbeei_contig8021:2609..28161683187016.3168268-UTR-P-wetherbeei_contig8021:2609..2816Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8021 2610..2816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187016.297134-CDS-P-wetherbeei_contig8021:1413..14411683187016.297134-CDS-P-wetherbeei_contig8021:1413..1441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8021 1414..1441 +
1683187016.307074-CDS-P-wetherbeei_contig8021:1602..26091683187016.307074-CDS-P-wetherbeei_contig8021:1602..2609Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8021 1603..2609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8021.1.1prot_P-wetherbeei_contig8021.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8021 1414..2609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8021.1.1

>prot_P-wetherbeei_contig8021.1.1 ID=prot_P-wetherbeei_contig8021.1.1|Name=mRNA_P-wetherbeei_contig8021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=345bp
MRAESGQEQSHHISHLINNMAWEHDDDNHGVLHKRTSSEALHQRESASYD
AQKRRRPTTAERLEANRQRNRIHARKTRERKKQRVQQLEDRSAKLQNECR
SLQEHLDTARALLYLSFSNGGGGGSSSPTTTEERSCVGDDASEDESWDQR
SDSCDFDRDSSLDDDVEESMLEFSAPDFAAAVSVASLPAGDRERLRRERN
RLHARKTRMRKKLVLEALERKVLVYERRVADLRLLLVQAGCATNSRCVLS
GADSNSADAAAADAAMGGWSSDVRERRSVSEASSAPSTGSAALSAAPAAL
PLTDRVEVLVRAAEAESGSVGADLAEVCARLDICAADGPLRPPF*
back to top

mRNA from alignment at P-wetherbeei_contig8021:1140..2816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8021.1.1 ID=mRNA_P-wetherbeei_contig8021.1.1|Name=mRNA_P-wetherbeei_contig8021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1677bp|location=Sequence derived from alignment at P-wetherbeei_contig8021:1140..2816+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGCTCAGCTATCCTGTGCAGCCACTGATCTCTAGAGTAAGCAGTGATA
GAATGGGTAGCGCGGCTGCGATCCTTTTGTTGTTCGTTTTCCCTTTTTTG
GCGTATCTGGGGAAAGAACAAGCCCGCTTTAAGAAGGGGTCGGCTCGCAC
CTTTCGAACGTACACCTCATAAATGTGTCCTTCTAACACCTTCATTTCAC
CATCAAAGGGATTAATCCTGTGTAACTTCAACCAGTAGACAGATGACGAA
AAATCGTTCCCTTTCTTTTTTTCGATGCGCGCAGAGTCTGGACAAGAACA
AAGTGAGTGGACGCTTCCTTCTTACGTTTGACTAATCTCGTTCGTGCACG
ACCACACGTGAGAAGCCACCTTTCGACGCGTGTTCCGGCCTCGCGTCCTG
GAACACCGACGCCACTGCTCCACGCGTTTGTTCTTGCTATGACAATGGAA
CTTGGCGCTGCAGGCCATCACATCTCTCACCTCATCAACAATATGGCATG
GGAGCACGACGACGATAATCACGGAGTCTTGCATAAACGGACATCTTCCG
AAGCCTTGCATCAGAGGGAGTCTGCGTCGTATGACGCTCAAAAGCGACGC
CGCCCGACGACCGCGGAGCGGCTCGAGGCCAATCGGCAGCGCAACCGTAT
CCACGCGAGAAAAACCCGCGAGCGGAAAAAGCAGCGCGTGCAACAGCTAG
AAGACCGGAGCGCCAAGCTTCAGAACGAGTGCCGTTCCCTGCAAGAACAC
CTCGACACCGCCAGGGCGCTCCTCTACCTCAGCTTCAGCAATGGCGGCGG
CGGCGGCTCATCGAGCCCGACAACTACGGAGGAGCGCAGCTGCGTCGGGG
ATGACGCCAGCGAAGACGAGAGCTGGGACCAGCGCTCCGACTCCTGCGAC
TTCGACAGGGATTCTTCTCTCGACGACGACGTCGAAGAAAGCATGCTGGA
GTTCTCCGCGCCGGACTTCGCCGCCGCGGTCAGCGTCGCCTCCCTGCCCG
CCGGCGACAGGGAGCGGCTCCGGCGGGAGCGGAACCGGCTGCACGCCCGT
AAGACGCGCATGCGCAAGAAGCTCGTCCTGGAGGCGCTGGAGCGCAAGGT
CCTCGTCTACGAGCGTCGCGTCGCGGACCTCCGGCTGCTGCTCGTGCAGG
CCGGCTGCGCCACCAATTCGCGATGCGTGCTGTCCGGCGCCGACTCCAAC
AGCGCCGACGCCGCCGCCGCCGACGCCGCCATGGGCGGCTGGTCGAGCGA
CGTCCGCGAGCGGCGCTCCGTTTCGGAAGCGTCTTCCGCCCCCTCGACCG
GGTCGGCGGCTCTGTCGGCGGCTCCGGCGGCACTTCCATTGACAGACCGC
GTGGAAGTGCTCGTGCGGGCGGCGGAGGCCGAGAGCGGGAGCGTGGGCGC
CGACCTGGCCGAGGTCTGCGCCAGGCTCGACATTTGTGCCGCGGACGGCC
CGTTAAGGCCGCCTTTTTGATCGGCCTACAGCAATAGCCAGCGACTTTGT
GCGTCAGCGACGCCGGTCGGTGCCGGCGCTGCTCCGCTGGGTATGGCGTG
ACGCCGGCGTCGGTGAACCCAAGACCGGCCAGAAAGGCGCCGCAACTGAG
CGGCGGCGACAATTTTATTCAACAAGAGCGAAAGTTTGGCCGGACCGTGG
TGGTGCGGCCACAGCAGCAGCAGGAGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8021:1140..2816+

>mRNA_P-wetherbeei_contig8021.1.1 ID=mRNA_P-wetherbeei_contig8021.1.1|Name=mRNA_P-wetherbeei_contig8021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1035bp|location=Sequence derived from alignment at P-wetherbeei_contig8021:1140..2816+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGCAGAGTCTGGACAAGAACAAAGCCATCACATCTCTCACCTCAT
CAACAATATGGCATGGGAGCACGACGACGATAATCACGGAGTCTTGCATA
AACGGACATCTTCCGAAGCCTTGCATCAGAGGGAGTCTGCGTCGTATGAC
GCTCAAAAGCGACGCCGCCCGACGACCGCGGAGCGGCTCGAGGCCAATCG
GCAGCGCAACCGTATCCACGCGAGAAAAACCCGCGAGCGGAAAAAGCAGC
GCGTGCAACAGCTAGAAGACCGGAGCGCCAAGCTTCAGAACGAGTGCCGT
TCCCTGCAAGAACACCTCGACACCGCCAGGGCGCTCCTCTACCTCAGCTT
CAGCAATGGCGGCGGCGGCGGCTCATCGAGCCCGACAACTACGGAGGAGC
GCAGCTGCGTCGGGGATGACGCCAGCGAAGACGAGAGCTGGGACCAGCGC
TCCGACTCCTGCGACTTCGACAGGGATTCTTCTCTCGACGACGACGTCGA
AGAAAGCATGCTGGAGTTCTCCGCGCCGGACTTCGCCGCCGCGGTCAGCG
TCGCCTCCCTGCCCGCCGGCGACAGGGAGCGGCTCCGGCGGGAGCGGAAC
CGGCTGCACGCCCGTAAGACGCGCATGCGCAAGAAGCTCGTCCTGGAGGC
GCTGGAGCGCAAGGTCCTCGTCTACGAGCGTCGCGTCGCGGACCTCCGGC
TGCTGCTCGTGCAGGCCGGCTGCGCCACCAATTCGCGATGCGTGCTGTCC
GGCGCCGACTCCAACAGCGCCGACGCCGCCGCCGCCGACGCCGCCATGGG
CGGCTGGTCGAGCGACGTCCGCGAGCGGCGCTCCGTTTCGGAAGCGTCTT
CCGCCCCCTCGACCGGGTCGGCGGCTCTGTCGGCGGCTCCGGCGGCACTT
CCATTGACAGACCGCGTGGAAGTGCTCGTGCGGGCGGCGGAGGCCGAGAG
CGGGAGCGTGGGCGCCGACCTGGCCGAGGTCTGCGCCAGGCTCGACATTT
GTGCCGCGGACGGCCCGTTAAGGCCGCCTTTTTGA
back to top