mRNA_P-wetherbeei_contig1293.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1293.2.1
Unique NamemRNA_P-wetherbeei_contig1293.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Match: A0A352KDT8_9PROT (Thioredoxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KDT8_9PROT)

HSP 1 Score: 186 bits (471), Expect = 3.410e-59
Identity = 84/105 (80.00%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    1 MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEIPGLTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEWIKASI 315
            M TT+VTD++F+ DVLNA  PVLVDFWAEWCGPCKQIAPALEELSNEIPGLT+AKLN+D+NP M  KYGVRGIPTMMIFQDGQV+ATKVGA+PK KI EWIK+++
Sbjct:    1 MATTSVTDQSFDEDVLNAPGPVLVDFWAEWCGPCKQIAPALEELSNEIPGLTIAKLNIDENPNMPTKYGVRGIPTMMIFQDGQVSATKVGALPKNKIAEWIKSAM 105
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BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Match: A0A3C0TUX2_9PROT (Thioredoxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUX2_9PROT)

HSP 1 Score: 185 bits (470), Expect = 4.840e-59
Identity = 86/105 (81.90%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    1 MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEIPGLTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEWIKASI 315
            M TTTVTDE+FERDVLNA  PVLVDFWAEWCGPC+QIAPALE +S+E+  LTVAKLNVDDNPGMAA+YGVRGIPTMMIFQ GQVAATKVGA+PK +I+EWIK++I
Sbjct:    1 MATTTVTDESFERDVLNADQPVLVDFWAEWCGPCRQIAPALEAISDEMQNLTVAKLNVDDNPGMAARYGVRGIPTMMIFQHGQVAATKVGALPKSRIEEWIKSTI 105
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BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Match: A0A2D4VNL9_9HYPH (Thioredoxin n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VNL9_9HYPH)

HSP 1 Score: 164 bits (416), Expect = 8.570e-51
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEIPG-LTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEWIKASI 315
            M TT VTD++F+ DVL+A+ PVLVDFWAEWCGPCKQI PALEEL+ +  G +T+AK+N+D+NP +  K+GVRGIPT+MIF+DGQVAATKVGA+PKGKIQEWI +S+
Sbjct:    1 MTTTKVTDDSFDTDVLDASGPVLVDFWAEWCGPCKQIGPALEELAKDYGGKITIAKINIDENPNVPTKFGVRGIPTLMIFKDGQVAATKVGAMPKGKIQEWIDSSL 106
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BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Match: A0A2Z4UPN0_9HYPH (Thioredoxin n=3 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2Z4UPN0_9HYPH)

HSP 1 Score: 163 bits (413), Expect = 2.460e-50
Identity = 73/106 (68.87%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:    1 MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEIPG-LTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEWIKASI 315
            M T+ VTD++FE DV++A+ PVLVDFWAEWCGPCKQI+PALEE++ ++   LT+AKLN+D+NP +  KYGVRGIPT+MIF+DGQVAATKVGA+PKGKI+EWI++ I
Sbjct:    1 MATSKVTDDSFEADVIDASQPVLVDFWAEWCGPCKQISPALEEIAGDLGDKLTIAKLNIDENPNVPTKYGVRGIPTLMIFKDGQVAATKVGALPKGKIKEWIESEI 106
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BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Match: A0A2G2M0H4_9PROT (Thioredoxin n=2 Tax=root TaxID=1 RepID=A0A2G2M0H4_9PROT)

HSP 1 Score: 163 bits (413), Expect = 2.700e-50
Identity = 71/107 (66.36%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEIPG-LTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEWIKASIA 318
            MPT  V+DENFE +VLNA  PVLVDFWAEWCGPCKQI PALEELS E+ G +T+AK+N+D+NPG+ +KYGVRG+PT+M+F  GQV+ATKVGA+PK KI +W+ ++++
Sbjct:    1 MPTIAVSDENFESEVLNANGPVLVDFWAEWCGPCKQIGPALEELSGEMAGKVTIAKVNIDENPGIPSKYGVRGVPTLMLFSGGQVSATKVGAMPKSKIADWLNSAVS 107
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BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Match: A0A845Q8T2_9HYPH (Thioredoxin n=2 Tax=Parvibaculaceae TaxID=2813035 RepID=A0A845Q8T2_9HYPH)

HSP 1 Score: 162 bits (411), Expect = 4.960e-50
Identity = 75/106 (70.75%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEI-PGLTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEWIKASI 315
            M TT VTDE+FE DV++A+ PVLVDFWAEWCGPCKQI PALEE++ E+   LT+AK+N+D+NP +  KYGVRGIPT+MIF+DGQVAATKVGA+PK KI EWI  SI
Sbjct:    1 MATTKVTDESFESDVIDASGPVLVDFWAEWCGPCKQIGPALEEIAGEMGEKLTIAKINIDENPNVPTKYGVRGIPTLMIFKDGQVAATKVGALPKSKIAEWIDESI 106
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BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Match: A0A081BE48_9HYPH (Thioredoxin n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BE48_9HYPH)

HSP 1 Score: 162 bits (411), Expect = 4.960e-50
Identity = 72/106 (67.92%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEIPG-LTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEWIKASI 315
            M TT VTD +FE DV++++ PVLVDFWAEWCGPCKQI PALEE++ ++ G +T+AK+N+D+NP    KYGVRGIPT+M+F+DGQVAATKVGA+PKGKIQEWI++S+
Sbjct:    1 MATTKVTDGSFESDVIDSSTPVLVDFWAEWCGPCKQIGPALEEIAADLGGKVTIAKINIDENPNTPTKYGVRGIPTLMLFKDGQVAATKVGALPKGKIQEWIESSL 106
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BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Match: A0A8J6LT68_9PROT (Thioredoxin n=1 Tax=Euryhalocaulis sp. TaxID=2744307 RepID=A0A8J6LT68_9PROT)

HSP 1 Score: 162 bits (411), Expect = 5.980e-50
Identity = 72/107 (67.29%), Postives = 92/107 (85.98%), Query Frame = 1 
Query:    1 MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEIPG-LTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEWIKASIA 318
            M T  VTD++F+ DVL ++ PVLVDFWAEWCGPCKQI PALE+++NE+ G +TVAK+N+DDNPG+  KYGVRGIPT+M+FQ+GQVA TKVGA+PK KI EWI+ ++A
Sbjct:    1 MATKNVTDDSFQSDVLESSGPVLVDFWAEWCGPCKQIGPALEDIANEMDGKVTVAKVNIDDNPGVPTKYGVRGIPTLMLFQNGQVAGTKVGAMPKSKISEWIEETVA 107
[Close]
BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Match: A0A2A4SAC2_9HYPH (Thioredoxin n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4SAC2_9HYPH)

HSP 1 Score: 162 bits (409), Expect = 1.000e-49
Identity = 75/106 (70.75%), Postives = 90/106 (84.91%), Query Frame = 1 
Query:    1 MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEIPG-LTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEWIKASI 315
            M TT VTD +FE DV++A+ PVLVDFWAEWCGPCKQI P+LEEL+ E+ G +T+AK+N+D+NP    K+GVRGIPTMMIF+DGQVAATKVGA+PK KI EWIK SI
Sbjct:    1 MSTTKVTDASFETDVIDASGPVLVDFWAEWCGPCKQIGPSLEELAAEMGGDVTIAKINIDENPNTPTKFGVRGIPTMMIFKDGQVAATKVGALPKNKIAEWIKESI 106
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BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Match: A7HPC9_PARL1 (Thioredoxin n=10 Tax=Proteobacteria TaxID=1224 RepID=A7HPC9_PARL1)

HSP 1 Score: 160 bits (405), Expect = 4.070e-49
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEIPG-LTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEWIKASI 315
            M T  VTD +FE DVL+A  PVLVDFWAEWCGPCKQI PALEE++ +  G LT+AK+N+D+NP +  KYGVRGIPT+MIF+DGQVAATKVGA+PKGKI EWI  S+
Sbjct:    1 MATNKVTDASFEADVLDAAGPVLVDFWAEWCGPCKQIGPALEEIAKDYGGKLTIAKINIDENPNVPTKYGVRGIPTLMIFKDGQVAATKVGALPKGKIVEWIDNSL 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1293.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352KDT8_9PROT3.410e-5980.00Thioredoxin n=1 Tax=Alphaproteobacteria bacterium ... [more]
A0A3C0TUX2_9PROT4.840e-5981.90Thioredoxin n=1 Tax=Alphaproteobacteria bacterium ... [more]
A0A2D4VNL9_9HYPH8.570e-5169.81Thioredoxin n=2 Tax=Parvibaculum TaxID=256616 RepI... [more]
A0A2Z4UPN0_9HYPH2.460e-5068.87Thioredoxin n=3 Tax=Rhodobiaceae bacterium TaxID=2... [more]
A0A2G2M0H4_9PROT2.700e-5066.36Thioredoxin n=2 Tax=root TaxID=1 RepID=A0A2G2M0H4_... [more]
A0A845Q8T2_9HYPH4.960e-5070.75Thioredoxin n=2 Tax=Parvibaculaceae TaxID=2813035 ... [more]
A0A081BE48_9HYPH4.960e-5067.92Thioredoxin n=1 Tax=Tepidicaulis marinus TaxID=133... [more]
A0A8J6LT68_9PROT5.980e-5067.29Thioredoxin n=1 Tax=Euryhalocaulis sp. TaxID=27443... [more]
A0A2A4SAC2_9HYPH1.000e-4970.75Thioredoxin n=1 Tax=Rhodobiaceae bacterium TaxID=2... [more]
A7HPC9_PARL14.070e-4969.81Thioredoxin n=10 Tax=Proteobacteria TaxID=1224 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1293contigP-wetherbeei_contig1293:5688..6011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1282876.BAOK01000001_gene3572
Preferred nametrxA
PFAMsThioredoxin
Model size324
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.03e-51
EggNOG OGsCOG3118@1|root,COG3118@2|Bacteria,1MZBB@1224|Proteobacteria,2UCCR@28211|Alphaproteobacteria,4BQHB@82117|unclassified Alphaproteobacteria
DescriptionThioredoxin-like domain
Cds size324
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.9035933-CDS-P-wetherbeei_contig1293:5687..60111683185966.9035933-CDS-P-wetherbeei_contig1293:5687..6011Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1293 5688..6011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1293.2.1prot_P-wetherbeei_contig1293.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1293 5688..6011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1293.2.1

>prot_P-wetherbeei_contig1293.2.1 ID=prot_P-wetherbeei_contig1293.2.1|Name=mRNA_P-wetherbeei_contig1293.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MPTTTVTDENFERDVLNATNPVLVDFWAEWCGPCKQIAPALEELSNEIPG
LTVAKLNVDDNPGMAAKYGVRGIPTMMIFQDGQVAATKVGAIPKGKIQEW
IKASIAE*
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mRNA from alignment at P-wetherbeei_contig1293:5688..6011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1293.2.1 ID=mRNA_P-wetherbeei_contig1293.2.1|Name=mRNA_P-wetherbeei_contig1293.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig1293:5688..6011+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCACCACCACCGTTACCGATGAAAATTTTGAGCGCGACGTATTGAA
CGCAACCAATCCTGTGCTGGTGGATTTCTGGGCGGAGTGGTGCGGCCCGT
GCAAGCAGATCGCGCCTGCGCTGGAAGAGTTGTCAAATGAAATACCCGGC
TTGACGGTCGCCAAACTGAATGTCGATGACAATCCCGGCATGGCGGCGAA
ATATGGCGTACGCGGCATTCCCACCATGATGATTTTTCAGGACGGCCAGG
TGGCGGCAACCAAAGTCGGCGCCATTCCCAAAGGCAAAATCCAGGAATGG
ATCAAAGCCTCTATCGCGGAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1293:5688..6011+

>mRNA_P-wetherbeei_contig1293.2.1 ID=mRNA_P-wetherbeei_contig1293.2.1|Name=mRNA_P-wetherbeei_contig1293.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig1293:5688..6011+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCACCACCACCGTTACCGATGAAAATTTTGAGCGCGACGTATTGAA
CGCAACCAATCCTGTGCTGGTGGATTTCTGGGCGGAGTGGTGCGGCCCGT
GCAAGCAGATCGCGCCTGCGCTGGAAGAGTTGTCAAATGAAATACCCGGC
TTGACGGTCGCCAAACTGAATGTCGATGACAATCCCGGCATGGCGGCGAA
ATATGGCGTACGCGGCATTCCCACCATGATGATTTTTCAGGACGGCCAGG
TGGCGGCAACCAAAGTCGGCGCCATTCCCAAAGGCAAAATCCAGGAATGG
ATCAAAGCCTCTATCGCGGAATAG
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