mRNA_P-wetherbeei_contig801.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig801.2.1
Unique NamemRNA_P-wetherbeei_contig801.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig801.2.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.160e-16
Identity = 60/151 (39.74%), Postives = 82/151 (54.30%), Query Frame = 1 
Query:   52 MVFTPLYHPLAAGSQSKAGYKGSLDKRQTAALTTLKNAAKKNKVPLNLISGPGEQPDCVLLRYLRANSFSEDKALAAALDGIRWCNEVGVAALRGVDEPSELPRIEAAAGDRPASISGAPQAPPSPWPPRLHHL---TGFDRQGRPVLVMR 495
            M  TPL+HP    S+   G  G L KR+ A+L +LK  A+K  + L L+ GPGEQ D  LLR+LRA  F E +ALA+ +  + W   VG++ LRG       P   AA G   ++        PSP P     +   +GFDR GRP++V+R
Sbjct:    1 MPATPLFHPKNESSKG-TGRLGRLTKREAASLASLKQLARKQGLSLGLVRGPGEQNDVCLLRFLRAQRFEEKRALASLVSCVEWGASVGLSGLRG------HPGGGAAEGQEGSA--------PSPLPAAEGLVCLGSGFDRLGRPLVVVR 136
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BLAST of mRNA_P-wetherbeei_contig801.2.1 vs. uniprot
Match: A0A6H5JL26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL26_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.730e-16
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 1 
Query:   43 IKAMVFTPLYHPLAAGSQSKAGYKGSLDKRQTAALTTLKNAAKKNKVPLNLISGPGEQPDCVLLRYLRANSFSEDKALAAALDGIRWCNEVGVAALRGVDEPSELPRIEAAAGDRPASISGAPQAPPSPWPPRLHHL---TGFDRQGRPVLVMR 495
            +  M  TPL+HP    S+   G  G L KR+ A+L +LK  A+K  + L L+ GPGEQ D  LLR+LRA  F E +ALA+ +  + W   VG++ LRG          E +A              PSP P     +   +GFDR GRP++V+R
Sbjct:  357 VTIMPATPLFHPHNESSKG-TGRLGRLTKREAASLASLKQLARKQGLSLGLVRGPGEQNDVCLLRFLRAQRFEEKRALASLVSCVEWGASVGLSGLRGHHGGGAADGQEGSA--------------PSPLPAAEGLVCLGSGFDRLGRPLVVVR 495
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig801.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI57_ECTSI1.160e-1639.74CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JL26_9PHAE1.730e-1637.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig801contigP-wetherbeei_contig801:4764..5418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LI57
PFAMsCRAL_TRIO
Model size560
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.12e-17
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Descriptionmacromolecule localization
Cds size507
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187015.532929-CDS-P-wetherbeei_contig801:4763..50511683187015.532929-CDS-P-wetherbeei_contig801:4763..5051Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig801 4764..5051 -
1683187015.544568-CDS-P-wetherbeei_contig801:5148..53671683187015.544568-CDS-P-wetherbeei_contig801:5148..5367Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig801 5149..5367 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187015.554452-UTR-P-wetherbeei_contig801:5367..54181683187015.554452-UTR-P-wetherbeei_contig801:5367..5418Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig801 5368..5418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig801.2.1prot_P-wetherbeei_contig801.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig801 4764..5367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig801.2.1

>prot_P-wetherbeei_contig801.2.1 ID=prot_P-wetherbeei_contig801.2.1|Name=mRNA_P-wetherbeei_contig801.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=169bp
MVFTPLYHPLAAGSQSKAGYKGSLDKRQTAALTTLKNAAKKNKVPLNLIS
GPGEQPDCVLLRYLRANSFSEDKALAAALDGIRWCNEVGVAALRGVDEPS
ELPRIEAAAGDRPASISGAPQAPPSPWPPRLHHLTGFDRQGRPVLVMRAT
DVADALRAAPGPAPGPPSA
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mRNA from alignment at P-wetherbeei_contig801:4764..5418-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig801.2.1 ID=mRNA_P-wetherbeei_contig801.2.1|Name=mRNA_P-wetherbeei_contig801.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=655bp|location=Sequence derived from alignment at P-wetherbeei_contig801:4764..5418- (Phaeothamnion wetherbeei SAG_119_79)
CGCTGTCTGCTGAAGCTTGCCCCTTTGCCCTGGAGGTTTTGAATAAAAGC
CATGGTGTTTACTCCGCTGTATCATCCCCTGGCAGCCGGGTCGCAGAGCA
AGGCAGGATATAAAGGGAGTTTGGATAAGCGACAGACGGCGGCCCTTACT
ACGCTCAAGAATGCTGCAAAGAAGAACAAGGTCCCTCTGAACCTTATCTC
CGGACCGGGCGAGCAACCCGATTGCGTCCTGCTGCGATACCTCAGAGCGA
ATTCCTTCAGTGAAGACAAGGTAATGCGAGAATGATTTCATTCTACTTTG
CAATCTCAAGTTTCGAAGGAACCGCTTTTCAATTTGTCCTACAACATTCC
CAAAATTCCCTGTGCAGGCACTTGCGGCAGCACTCGACGGCATCAGATGG
TGCAATGAAGTCGGAGTCGCTGCCCTGCGCGGCGTAGACGAGCCTAGCGA
ACTTCCCCGCATCGAGGCCGCTGCTGGCGACCGGCCAGCATCAATATCGG
GAGCGCCGCAGGCCCCGCCGTCCCCGTGGCCGCCGCGCCTCCACCACCTC
ACCGGCTTCGACCGCCAGGGCCGGCCGGTGCTGGTGATGCGCGCCACCGA
TGTCGCCGATGCTCTCCGCGCCGCTCCGGGCCCCGCCCCCGGCCCGCCTT
CCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig801:4764..5418-

>mRNA_P-wetherbeei_contig801.2.1 ID=mRNA_P-wetherbeei_contig801.2.1|Name=mRNA_P-wetherbeei_contig801.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=507bp|location=Sequence derived from alignment at P-wetherbeei_contig801:4764..5418- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTTTACTCCGCTGTATCATCCCCTGGCAGCCGGGTCGCAGAGCAA
GGCAGGATATAAAGGGAGTTTGGATAAGCGACAGACGGCGGCCCTTACTA
CGCTCAAGAATGCTGCAAAGAAGAACAAGGTCCCTCTGAACCTTATCTCC
GGACCGGGCGAGCAACCCGATTGCGTCCTGCTGCGATACCTCAGAGCGAA
TTCCTTCAGTGAAGACAAGGCACTTGCGGCAGCACTCGACGGCATCAGAT
GGTGCAATGAAGTCGGAGTCGCTGCCCTGCGCGGCGTAGACGAGCCTAGC
GAACTTCCCCGCATCGAGGCCGCTGCTGGCGACCGGCCAGCATCAATATC
GGGAGCGCCGCAGGCCCCGCCGTCCCCGTGGCCGCCGCGCCTCCACCACC
TCACCGGCTTCGACCGCCAGGGCCGGCCGGTGCTGGTGATGCGCGCCACC
GATGTCGCCGATGCTCTCCGCGCCGCTCCGGGCCCCGCCCCCGGCCCGCC
TTCCGCC
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