mRNA_P-wetherbeei_contig8001.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8001.1.1
Unique NamemRNA_P-wetherbeei_contig8001.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8001.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8001contigP-wetherbeei_contig8001:1149..1637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size489
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187014.8989868-CDS-P-wetherbeei_contig8001:1148..14901683187014.8989868-CDS-P-wetherbeei_contig8001:1148..1490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8001 1149..1490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187014.9169116-UTR-P-wetherbeei_contig8001:1490..16371683187014.9169116-UTR-P-wetherbeei_contig8001:1490..1637Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8001 1491..1637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8001.1.1prot_P-wetherbeei_contig8001.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8001 1149..1490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8001.1.1

>prot_P-wetherbeei_contig8001.1.1 ID=prot_P-wetherbeei_contig8001.1.1|Name=mRNA_P-wetherbeei_contig8001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MGFMPFSKPSHATPFSRWRAPLRGTGTATATWVADHSPLTNCLRYHRQSR
LRPITSVRFRRAVVEGICAPPPWHRVCACLCMGTRAFSKSIQFYLRVFRF
LLSFLDYSGFILRA
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mRNA from alignment at P-wetherbeei_contig8001:1149..1637-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8001.1.1 ID=mRNA_P-wetherbeei_contig8001.1.1|Name=mRNA_P-wetherbeei_contig8001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig8001:1149..1637- (Phaeothamnion wetherbeei SAG_119_79)
GTTATGTGATAGAGGCGTCCTTTTTGCGGTCGCTGGTATTGTTTTGGCGC
CTCCGTCGATATCGGAGCTGTTGACCCTGTCAGAGGTTCCAACCGTCACA
GGGATGGTTTCGCGTCGCGTAAGATTTGGAAAGTTCGGGAAGGGTTTATG
GGGTTCATGCCCTTTTCCAAACCTTCTCACGCGACGCCGTTTTCACGTTG
GCGGGCACCACTTCGAGGAACGGGAACCGCGACAGCGACATGGGTTGCTG
ACCACTCCCCACTAACCAATTGCCTCCGCTACCACCGCCAGTCGCGCCTG
CGGCCAATCACAAGCGTTCGGTTTCGTCGTGCCGTTGTGGAAGGAATTTG
CGCGCCCCCGCCATGGCACCGCGTTTGCGCCTGCTTATGTATGGGCACGA
GAGCATTCTCAAAGAGTATCCAGTTCTACCTTCGTGTGTTTCGTTTTCTT
CTGTCCTTCTTAGACTACTCCGGTTTTATTCTGAGAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8001:1149..1637-

>mRNA_P-wetherbeei_contig8001.1.1 ID=mRNA_P-wetherbeei_contig8001.1.1|Name=mRNA_P-wetherbeei_contig8001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig8001:1149..1637- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGTTCATGCCCTTTTCCAAACCTTCTCACGCGACGCCGTTTTCACG
TTGGCGGGCACCACTTCGAGGAACGGGAACCGCGACAGCGACATGGGTTG
CTGACCACTCCCCACTAACCAATTGCCTCCGCTACCACCGCCAGTCGCGC
CTGCGGCCAATCACAAGCGTTCGGTTTCGTCGTGCCGTTGTGGAAGGAAT
TTGCGCGCCCCCGCCATGGCACCGCGTTTGCGCCTGCTTATGTATGGGCA
CGAGAGCATTCTCAAAGAGTATCCAGTTCTACCTTCGTGTGTTTCGTTTT
CTTCTGTCCTTCTTAGACTACTCCGGTTTTATTCTGAGAGCC
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