mRNA_P-wetherbeei_contig799.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig799.3.1
Unique NamemRNA_P-wetherbeei_contig799.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig799.3.1 vs. uniprot
Match: A0A835YUH4_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUH4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:    7 IPLVQPQVPAQDNGCDCGVYVLAYAEHIATRWPALLCGDFNKNERSCALQKATAFINRKSFSPADVAARRVHFRGLL 237
            +PLV+P+ P Q NGCDCGVYVL YAE +   WP +   +       C        +  ++F   DV+A+RV  R LL
Sbjct:   99 LPLVKPRAPQQSNGCDCGVYVLQYAETLLRAWPEVTAAEVGDALGGC--------LGPRAFGEGDVSAKRVAMRALL 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig799.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YUH4_9STRA2.040e-1040.26ULP_PROTEASE domain-containing protein n=1 Tax=Tri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig799contigP-wetherbeei_contig799:7884..8144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDN6
PFAMsPeptidase_C48
Model size261
Max annot lvl2759|Eukaryota
KEGG koko:K08596
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
Exons1
Evalue3.54e-10
EggNOG OGsCOG5160@1|root,KOG0779@2759|Eukaryota
EC3.4.22.68
Descriptionprotein desumoylation
Cds size261
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.5323822-CDS-P-wetherbeei_contig799:7883..81441683187013.5323822-CDS-P-wetherbeei_contig799:7883..8144Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig799 7884..8144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig799.3.1prot_P-wetherbeei_contig799.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig799 7884..8144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig799.3.1

>prot_P-wetherbeei_contig799.3.1 ID=prot_P-wetherbeei_contig799.3.1|Name=mRNA_P-wetherbeei_contig799.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
GPIPLVQPQVPAQDNGCDCGVYVLAYAEHIATRWPALLCGDFNKNERSCA
LQKATAFINRKSFSPADVAARRVHFRGLLRRMQEERN
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mRNA from alignment at P-wetherbeei_contig799:7884..8144-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig799.3.1 ID=mRNA_P-wetherbeei_contig799.3.1|Name=mRNA_P-wetherbeei_contig799.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig799:7884..8144- (Phaeothamnion wetherbeei SAG_119_79)
GGGCCAATTCCGCTCGTGCAGCCGCAGGTGCCGGCGCAGGACAACGGCTG
CGACTGCGGCGTCTACGTGCTGGCGTACGCCGAGCACATTGCGACGCGGT
GGCCGGCGCTGCTGTGCGGTGACTTTAACAAGAATGAGCGGAGCTGCGCG
CTCCAGAAGGCGACGGCGTTCATCAATCGGAAGTCGTTTTCGCCAGCGGA
TGTCGCGGCGCGCCGCGTGCACTTCCGTGGGCTGCTGAGAAGAATGCAGG
AAGAGCGTAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig799:7884..8144-

>mRNA_P-wetherbeei_contig799.3.1 ID=mRNA_P-wetherbeei_contig799.3.1|Name=mRNA_P-wetherbeei_contig799.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig799:7884..8144- (Phaeothamnion wetherbeei SAG_119_79)
GGGCCAATTCCGCTCGTGCAGCCGCAGGTGCCGGCGCAGGACAACGGCTG
CGACTGCGGCGTCTACGTGCTGGCGTACGCCGAGCACATTGCGACGCGGT
GGCCGGCGCTGCTGTGCGGTGACTTTAACAAGAATGAGCGGAGCTGCGCG
CTCCAGAAGGCGACGGCGTTCATCAATCGGAAGTCGTTTTCGCCAGCGGA
TGTCGCGGCGCGCCGCGTGCACTTCCGTGGGCTGCTGAGAAGAATGCAGG
AAGAGCGTAAC
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