mRNA_P-wetherbeei_contig798.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig798.2.1
Unique NamemRNA_P-wetherbeei_contig798.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Match: A0A7S2GC97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GC97_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.970e-18
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    4 LWTYITMPVISAVIGYGTNVVALWMTFHPINFVGIRIWQPEDSPLGLFGWQG 159
            LW Y+ MP +SA +G+ TNV+AL MTF+P+ F+GI++WQP++ PLGLFGWQG
Sbjct:    6 LWLYLVMPFMSATVGWLTNVLALKMTFYPVEFIGIKLWQPKNQPLGLFGWQG 57
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BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Match: D7G378_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G378_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.420e-17
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 PLWTYITMPVISAVIGYGTNVVALWMTFHPINFVGIRIWQPEDSPLGLFGWQG 159
            P W ++TMP IS  +GY TN++AL MTF+P+ F GI+IWQPED PLG  GWQG
Sbjct:   92 PWWVFVTMPFISGAVGYVTNILALKMTFYPVEFWGIKIWQPEDQPLGCIGWQG 144
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BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Match: A0A7S2D246_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D246_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.180e-17
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    4 LWTYITMPVISAVIGYGTNVVALWMTFHPINFVGIRIWQPEDSPLGLFGWQG 159
            LW Y+ MP +SA +G+ TNV+AL MTF+P+ F+GI++WQP++ PLGLFGWQG
Sbjct:    6 LWLYLVMPFMSATVGWLTNVLALKMTFYPVEFIGIKLWQPKNQPLGLFGWQG 57
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BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Match: A0A7S0GGA3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GGA3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.470e-16
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 PLWTYITMPVISAVIGYGTNVVALWMTFHPINFVGIRIWQPEDSPLGLFGWQG 159
            PLW YIT+P IS ++G+GTNV+AL M F+P+ F GI +++ +D P GLFGWQG
Sbjct:    9 PLWQYITIPFISGIVGWGTNVIALQMVFYPLEFFGIELFRIKDQPWGLFGWQG 61
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BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Match: A0A7S2SNZ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNZ7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.300e-14
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 PLWTYITMPVISAVIGYGTNVVALWMTFHPINFVG--IRIWQPEDSPLGLFGWQG 159
            PLW Y+ MP IS ++G+GTNVVAL MTF+P+ F    ++++QP + P GLFGWQG
Sbjct:   14 PLWNYLIMPFISGIVGWGTNVVALKMTFYPLEFQPYFLKVYQPPEQPFGLFGWQG 68
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BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Match: B8C8A7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8A7_THAPS)

HSP 1 Score: 72.8 bits (177), Expect = 1.600e-13
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 PLWTYITMPVISAVIGYGTNVVALWMTFHPINFVGIRIWQPEDSPLGLFGWQGKCSPPLE 180
            PLW Y+  PVI+ V+GY TNV+AL MTF PI F G  +++ +D P GLFGWQG      E
Sbjct:    9 PLWYYLIQPVIAGVVGYITNVLALEMTFRPIEFFGPELFRIKDQPWGLFGWQGIIPTKAE 68
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BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Match: A0A2R5GAS8_9STRA (Sugar phosphate exchanger 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAS8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.460e-13
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 PLWTYITMPVISAVIGYGTNVVALWMTFHPINFVGIRIWQPEDSPLGLFGWQGKCSPPLE 180
            P W ++ MP+IS ++GYGTNVVAL +TF P+ F GI +++ ++ PLG  GWQG      E
Sbjct:  476 PWWFFLLMPIISGIVGYGTNVVALKLTFGPLQFWGIELFRIKNEPLGCIGWQGIVPTKAE 535
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BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Match: A0A7S1B4F2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B4F2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.080e-12
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 PLWTYITMPVISAVIGYGTNVVALWMTFHPINFVGIRIWQPEDSPLGLFGWQG 159
            P+W Y  MP ++ ++G+ TNV+A+ MTF+P+ F GIR+ + ++ P GLFGWQG
Sbjct:   21 PVWMYFAMPFVNGIVGWSTNVLAMKMTFYPLEFSGIRLCRIKNQPWGLFGWQG 73
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BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Match: A0A812KYM6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812KYM6_9DINO)

HSP 1 Score: 70.5 bits (171), Expect = 1.120e-12
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    4 LWTYITMPVISAVIGYGTNVVALWMTFHPINFVGIRIWQPEDSPLGLFGWQG 159
            +W Y+T+PV++AV+GYGTN V + M F+PI F+G+ I +  ++PLG  GWQG
Sbjct:   47 MWAYVTIPVVAAVVGYGTNWVGVKMIFYPIEFLGVNIKRWPETPLGFMGWQG 98
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BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Match: A0A7S2EBD3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBD3_TRICV)

HSP 1 Score: 69.3 bits (168), Expect = 2.760e-12
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    7 WTYITMPVISAVIGYGTNVVALWMTFHPINFVGIRIWQPEDSPLGLFGWQGKCSPPLE 180
            W Y  MP ++ V+G+ TNV+AL MTF PI F+GI +++  D P GLFGWQG      E
Sbjct:    7 WEYFIMPFMAGVVGWATNVLALEMTFKPIEFMGIELFRIRDQPWGLFGWQGIIPTKAE 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig798.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2GC97_9STRA3.970e-1861.54Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
D7G378_ECTSI1.420e-1762.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2D246_9STRA2.180e-1761.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0GGA3_9STRA1.470e-1658.49Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2SNZ7_9STRA1.300e-1456.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8C8A7_THAPS1.600e-1353.33Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A2R5GAS8_9STRA4.460e-1348.33Sugar phosphate exchanger 3 n=1 Tax=Hondaea fermen... [more]
A0A7S1B4F2_9STRA1.080e-1249.06Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A812KYM6_9DINO1.120e-1251.92Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A7S2EBD3_TRICV2.760e-1250.00Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig798contigP-wetherbeei_contig798:1095..1283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G378
PFAMsDUF445
Model size189
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.99e-15
EggNOG OGs28M2H@1|root,2QTJ6@2759|Eukaryota
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.1731384-CDS-P-wetherbeei_contig798:1094..12621683187013.1731384-CDS-P-wetherbeei_contig798:1094..1262Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig798 1095..1262 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187013.1846673-UTR-P-wetherbeei_contig798:1262..12831683187013.1846673-UTR-P-wetherbeei_contig798:1262..1283Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig798 1263..1283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig798.2.1prot_P-wetherbeei_contig798.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig798 1095..1262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig798.2.1

>prot_P-wetherbeei_contig798.2.1 ID=prot_P-wetherbeei_contig798.2.1|Name=mRNA_P-wetherbeei_contig798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
MPVISAVIGYGTNVVALWMTFHPINFVGIRIWQPEDSPLGLFGWQGKCSP
PLEGW*
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mRNA from alignment at P-wetherbeei_contig798:1095..1283-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig798.2.1 ID=mRNA_P-wetherbeei_contig798.2.1|Name=mRNA_P-wetherbeei_contig798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig798:1095..1283- (Phaeothamnion wetherbeei SAG_119_79)
CCGCTTTGGACTTATATTACGATGCCGGTCATAAGCGCCGTGATAGGTTA
CGGAACCAACGTCGTCGCACTGTGGATGACATTTCATCCCATAAATTTCG
TTGGAATACGCATCTGGCAGCCGGAGGATTCACCGCTCGGCCTCTTCGGT
TGGCAAGGCAAGTGCTCGCCTCCACTTGAAGGCTGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig798:1095..1283-

>mRNA_P-wetherbeei_contig798.2.1 ID=mRNA_P-wetherbeei_contig798.2.1|Name=mRNA_P-wetherbeei_contig798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig798:1095..1283- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGTCATAAGCGCCGTGATAGGTTACGGAACCAACGTCGTCGCACT
GTGGATGACATTTCATCCCATAAATTTCGTTGGAATACGCATCTGGCAGC
CGGAGGATTCACCGCTCGGCCTCTTCGGTTGGCAAGGCAAGTGCTCGCCT
CCACTTGAAGGCTGGTAG
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