mRNA_P-wetherbeei_contig7973.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7973.1.1
Unique NamemRNA_P-wetherbeei_contig7973.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7973.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7973contigP-wetherbeei_contig7973:67..1506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size186
Hectar predicted targeting categoryother localisation
Exons3
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.8988802-CDS-P-wetherbeei_contig7973:66..1221683187012.8988802-CDS-P-wetherbeei_contig7973:66..122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7973 67..122 +
1683187012.9104586-CDS-P-wetherbeei_contig7973:736..7841683187012.9104586-CDS-P-wetherbeei_contig7973:736..784Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7973 737..784 +
1683187012.9199455-CDS-P-wetherbeei_contig7973:1424..15061683187012.9199455-CDS-P-wetherbeei_contig7973:1424..1506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7973 1425..1506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7973.1.1prot_P-wetherbeei_contig7973.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7973 67..1506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7973.1.1

>prot_P-wetherbeei_contig7973.1.1 ID=prot_P-wetherbeei_contig7973.1.1|Name=mRNA_P-wetherbeei_contig7973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
PTADPTAAPTGTPTASPTRAPTQEPTADPTAAPTRAPTQEPTPDPTAAPT
RTPTVSPTRCI*
back to top

mRNA from alignment at P-wetherbeei_contig7973:67..1506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7973.1.1 ID=mRNA_P-wetherbeei_contig7973.1.1|Name=mRNA_P-wetherbeei_contig7973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1440bp|location=Sequence derived from alignment at P-wetherbeei_contig7973:67..1506+ (Phaeothamnion wetherbeei SAG_119_79)
CCGACGGCTGACCCTACGGCTGCGCCGACCGGGACGCCCACCGCCTCGCC
GACGAGGTGCACCTGAGAGGAAAGGGAGGAATGAAGTCGAATAAGTGGAG
GGCTTGGGGGAAGAGAGGAAGCAGCTGCAGTCCCATCTCTGCGTTGCGGC
ATGCTCTTGTATGCTGTTGTATCAGGAAGGGTTTATTTGCGTCGGCGCGG
CTGCATTACTGACTCAAATCCCCGAATACGCTTTCCCTCCCTTCCCTCCT
TCCCAATCCCATCGCCGTGGCGCCCGCGGACGCCAGCGCCCCGACTCCAG
ACCCGACAGCGATGCCGACGGCGGCGCCAACGAGGTCAGTAAGGGAAGAA
GGTGTTCCTTGTTCGACTGCCTGCTTTCAAGTGCAGAAAGTGCGTCTTGT
TTGAAGATATGCTTAGGGCATGGATAGTTTTTTCCCTCTCGATCTCAATA
ACCGTGTGTCGGTCGACTCCTCTTGCTTCCTACTAGCGTGCCTTCTTCGG
TCTTGCTATCCTCCAGAGCGCCCTTTTTGTACGTTAAGATGTCCTAGCTG
GGGCTGGCTCGTCGGGAGATGATATTCTAAAACTTTACTTTGTTGTTGTT
ACATTCTGCATGTCACTGCCATCACCGCCGCCACCGCCTTCGCCGCGACG
TCTGATGCTGGGACCGCCAGGGCCCCTACCCAAGAACCGACGGCTGACCC
TACGGCTGCGCCAACCCGGTCGCCGACCGTCTCGCCGACGAGGTGCATCT
GAGAGGAAAGGGAGGAATAAAGTCGAATAAGTATAGAGCTTAGGGGAAGG
GAGAAAGCAGCTGCAGTCTCATCTCTGCGTTGCGGCATCCTCTTGTATGC
TGTTGTATCAGGTAGGGTTTAATTGCTTCGGCGTGACGGCACAACTGACT
CAAACAGCCGAATACGCTTTGCCTCCCTTCTCATCGCTTTTCCCTCCTTC
CCAATCCCATTGCCGCGGTGTCGGCTGACGCTTTCCGTGCCAGCGCCCCG
ACTCCAGACCCGACAGCGATGCCCACGGCGGCGCCAACGAGGTCAGTAAG
GGAAGAGTGTATTCCTTGTTCGACTGCCTGCTTTCCAGTGCAGAAAGTGC
CTCTTGTTTCAAGATATGCTTAGGTCATGGAAAGGTTTTCCTCTCTGTGT
CAATCACTGTTTGTCAGTCGACTCCTCTTTCTCACTATTAAAGTGCCTTC
TGCGGTCTTGCTACCCTCCAGAGCACCCTTCTTGTACGTTAAGATGTTCT
AGCAGGGACTGGCTCGTCGGGAGATGATATTCTCAAAAATCTACTTGTTA
CTGTAACACTCTCCGCATCGCTGCCATCACCGGTGACGTTTGATGCTGGG
ACCGCCAGGGCCCCTACACAAGAACCGACGCCTGACCCTACGGCTGCGCC
GACCCGGACGCCGACCGTCTCGCCGACGAGGTGCATCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7973:67..1506+

>mRNA_P-wetherbeei_contig7973.1.1 ID=mRNA_P-wetherbeei_contig7973.1.1|Name=mRNA_P-wetherbeei_contig7973.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig7973:67..1506+ (Phaeothamnion wetherbeei SAG_119_79)
CCGACGGCTGACCCTACGGCTGCGCCGACCGGGACGCCCACCGCCTCGCC
GACGAGGGCCCCTACCCAAGAACCGACGGCTGACCCTACGGCTGCGCCAA
CCCGGGCCCCTACACAAGAACCGACGCCTGACCCTACGGCTGCGCCGACC
CGGACGCCGACCGTCTCGCCGACGAGGTGCATCTGA
back to top