mRNA_P-wetherbeei_contig7972.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7972.2.1
Unique NamemRNA_P-wetherbeei_contig7972.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Match: F0WLB6_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLB6_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.160e-36
Identity = 75/127 (59.06%), Postives = 87/127 (68.50%), Query Frame = 1 
Query:    1 IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSIANAFKALVAVAVECETFTFAKAQPFKDYLANPDAFKSAEPAAXXXXXXXXXXXXXXXXXXXXXXXMDLGGGMDMFGA 381
            +YDNGS+FD AVLDLTE DL AKF+  +RNVA+ SL +G PTLAS+PHSIANAFK+LVAVAVECET++F KA+PFK YLA+P AF     A                        MDLGGGMDMFGA
Sbjct:  192 VYDNGSVFDPAVLDLTEEDLFAKFIAGLRNVAAVSLEIGIPTLASIPHSIANAFKSLVAVAVECETYSFEKAEPFKAYLADPSAF-----AVASSGQIEAGKDKKEEKAEVEEEEMDLGGGMDMFGA 313
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BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Match: M4B8B5_HYAAE (60S acidic ribosomal protein P0 n=11 Tax=Peronosporaceae TaxID=4777 RepID=M4B8B5_HYAAE)

HSP 1 Score: 134 bits (336), Expect = 8.880e-36
Identity = 92/127 (72.44%), Postives = 106/127 (83.46%), Query Frame = 1 
Query:    1 IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSIANAFKALVAVAVECETFTFAKAQPFKDYLANPDAFKSAEPAAXXXXXXXXXXXXXXXXXXXXXXXMDLGGGMDMFGA 381
            +YDNGS+FD AVLDLTEADL AKF+  +RNVA+ SL LG PTLAS+PHSI NAFK LVA+AVECE F+F KA+P+K +LA+P AF  A PA XXXXXXXXXXXXXXXXXXX    +D+GGGMDMFGA
Sbjct:  192 VYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAVSLELGLPTLASIPHSITNAFKDLVAIAVECEEFSFEKAEPYKAFLADPSAFAVAAPAGXXXXXXXXXXXXXXXXXXX----VDMGGGMDMFGA 314
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BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Match: D0NVM9_PHYIT (60S acidic ribosomal protein P0 n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NVM9_PHYIT)

HSP 1 Score: 133 bits (335), Expect = 1.280e-35
Identity = 91/127 (71.65%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSIANAFKALVAVAVECETFTFAKAQPFKDYLANPDAFKSAEPAAXXXXXXXXXXXXXXXXXXXXXXXMDLGGGMDMFGA 381
            +YDNGS+FD AVLDLTEADL AKF+  +RNVA+ SL LG PTLAS+PHSIANAFK LVA+AVECE F+F KA+P+K +LA+P AF  A PA XXXXXXXXXXXXXXXXXX     +D+GGGMDMFG 
Sbjct:  192 VYDNGSIFDPAVLDLTEADLCAKFVAGLRNVAAMSLELGIPTLASIPHSIANAFKDLVAIAVECEEFSFEKAEPYKAFLADPSAFAVAAPAGXXXXXXXXXXXXXXXXXX-----VDMGGGMDMFGG 313
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BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Match: A0A485KPX2_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPX2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.370e-34
Identity = 65/92 (70.65%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    1 IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSIANAFKALVAVAVECETFTFAKAQPFKDYLANPDAFKSAEPAA 276
            +YDNGS+FD AVLDLTE +L AKF+  +RNVA+ SLALG+PTLAS+PHS+ANAFK+LVA+AVECE+F+F KA PFK +LA+P AF SA PAA
Sbjct:  192 VYDNGSIFDPAVLDLTEENLVAKFVGGLRNVAAVSLALGFPTLASIPHSLANAFKSLVAIAVECESFSFEKADPFKAFLADPSAFASAGPAA 283
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BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Match: A0A2D4BVG1_PYTIN (60S acidic ribosomal protein P0 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVG1_PYTIN)

HSP 1 Score: 129 bits (324), Expect = 5.500e-34
Identity = 91/127 (71.65%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSIANAFKALVAVAVECETFTFAKAQPFKDYLANPDAFKSAEPAAXXXXXXXXXXXXXXXXXXXXXXXMDLGGGMDMFGA 381
            +Y+NGS+FD  VLDLTE DL AKF+T +RNVA+ SL +G+PTLAS+PHS+ANAFK LVAVAVECETF+FAKA PFK YLA+P AF      A  XXXXXXXXXXXXXXXXXXXXX+D+GG  DMFG 
Sbjct:  192 VYENGSIFDPKVLDLTEEDLCAKFVTGLRNVAAVSLEIGFPTLASIPHSVANAFKTLVAVAVECETFSFAKADPFKAYLADPSAFA----VAAAXXXXXXXXXXXXXXXXXXXXXVDMGGAADMFGG 314
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BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Match: A0A0P6IAI3_9CRUS (60S acidic ribosomal protein P0 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6IAI3_9CRUS)

HSP 1 Score: 129 bits (323), Expect = 7.580e-34
Identity = 73/128 (57.03%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:    1 IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSIANAFKALVAVAVECETFTFAKAQPFKDYLANPDAFK-SAEPAAXXXXXXXXXXXXXXXXXXXXXXXMDLGGGMDMFGA 381
            +YDNGSLFD AVLDLTE DL AKF   +RNVA+ SL +G+PTLAS+PHS+ANAFK LVA+AVECETF+F KA PFK YLA+P AF  +A PAA                        D+GG  DMFG 
Sbjct:  192 VYDNGSLFDPAVLDLTEDDLCAKFAAGLRNVAAISLEIGFPTLASIPHSVANAFKTLVAIAVECETFSFKKADPFKAYLADPSAFAVAAGPAAGADAGAAKVEEVEEEEEA------DIGGATDMFGG 313
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BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Match: A0A6V2YPM3_HETAK (60S acidic ribosomal protein P0 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2YPM3_HETAK)

HSP 1 Score: 128 bits (321), Expect = 1.500e-33
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    1 IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSIANAFKALVAVAVECETFTFAKAQPFKDYLANPDAF 255
            IYDNGSLFDA VLDLT+ADL+AKF+ AV  +AS  L +GYPTLAS+PHSIANAFK LVAVAVECETF+F KA+P+K YLA+P AF
Sbjct:  190 IYDNGSLFDAKVLDLTDADLQAKFMAAVSKLASVCLEIGYPTLASMPHSIANAFKKLVAVAVECETFSFEKAEPYKAYLADPSAF 274
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BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Match: T0Q9U0_SAPDV (60S acidic ribosomal protein P0 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q9U0_SAPDV)

HSP 1 Score: 124 bits (311), Expect = 4.470e-32
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:    1 IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSIANAFKALVAVAVECETFTFAKAQPFKDYLANPDAF 255
            +YDNGS+FD AVLDLTE DL  KF+  +RNVA+ SLALG+PTLAS+PHSIANAFK LVAVAVECE+F+F KA PFK +LA+P AF
Sbjct:  192 VYDNGSMFDPAVLDLTEDDLVNKFVAGLRNVAAVSLALGFPTLASIPHSIANAFKTLVAVAVECESFSFKKADPFKAFLADPSAF 276
[Close]
BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Match: A0A835YRE1_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.460e-31
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1 
Query:    1 IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSIANAFKALVAVAVECETFTFAKAQPFKDYLANP 246
            +YDNGS+F+AAVLDLT+ DLRA+F+ AVRNVA+ASLALGYPTLASLPHSIANAFKALVAVAV+C   TFA+A+PFK  L  P
Sbjct:  192 VYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAP 273
[Close]
BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Match: A0A5D6XUU0_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUU0_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.460e-31
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:    1 IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSIANAFKALVAVAVECETFTFAKAQPFKDYLANPDAF 255
            +YDNGSLFD AVLDLTE DL AKF+  +RN+A+ SL +G+PTLAS+PHS+ANAFK LVAV VE ++F+FAKA P+K YLANP AF
Sbjct:  192 VYDNGSLFDPAVLDLTEDDLTAKFVAGLRNIAAVSLEIGFPTLASIPHSVANAFKTLVAVVVELDSFSFAKADPYKAYLANPSAF 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7972.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0WLB6_9STRA1.160e-3659.0660S acidic ribosomal protein P0 n=1 Tax=Albugo lai... [more]
M4B8B5_HYAAE8.880e-3672.4460S acidic ribosomal protein P0 n=11 Tax=Peronospo... [more]
D0NVM9_PHYIT1.280e-3571.6560S acidic ribosomal protein P0 n=16 Tax=Peronospo... [more]
A0A485KPX2_9STRA1.370e-3470.6560S acidic ribosomal protein P0 n=1 Tax=Aphanomyce... [more]
A0A2D4BVG1_PYTIN5.500e-3471.6560S acidic ribosomal protein P0 n=1 Tax=Pythium in... [more]
A0A0P6IAI3_9CRUS7.580e-3457.0360S acidic ribosomal protein P0 n=1 Tax=Daphnia ma... [more]
A0A6V2YPM3_HETAK1.500e-3375.2960S acidic ribosomal protein P0 n=2 Tax=Heterosigm... [more]
T0Q9U0_SAPDV4.470e-3272.9460S acidic ribosomal protein P0 n=3 Tax=Saprolegni... [more]
A0A835YRE1_9STRA1.460e-3176.8360S acidic ribosomal protein P0 n=1 Tax=Tribonema ... [more]
A0A5D6XUU0_9STRA2.460e-3169.4160S acidic ribosomal protein P0 n=1 Tax=Pythium br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7972contigP-wetherbeei_contig7972:2009..2721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog325452.fgenesh_scip_prom.46568.8996
PFAMsRibosomal_60s,Ribosomal_L10
Model size387
Max annot lvl4776|Peronosporales
KEGG koko:K02941
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.03e-39
EggNOG OGsCOG0244@1|root,KOG0815@2759|Eukaryota,3Q8AK@4776|Peronosporales
Ec32 ortholog descriptionRibosomal protein L10/acidic P0
Ec32 orthologEc-06_006850.1
DescriptionRibosomal protein P0 is the functional equivalent of E.coli protein L10
Cds size387
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.8468223-CDS-P-wetherbeei_contig7972:2008..22791683187012.8468223-CDS-P-wetherbeei_contig7972:2008..2279Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7972 2009..2279 -
1683187012.8629918-CDS-P-wetherbeei_contig7972:2605..27211683187012.8629918-CDS-P-wetherbeei_contig7972:2605..2721Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7972 2606..2721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7972.2.1prot_P-wetherbeei_contig7972.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7972 2009..2721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7972.2.1

>prot_P-wetherbeei_contig7972.2.1 ID=prot_P-wetherbeei_contig7972.2.1|Name=mRNA_P-wetherbeei_contig7972.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
IYDNGSLFDAAVLDLTEADLRAKFLTAVRNVASASLALGYPTLASLPHSI
ANAFKALVAVAVECETFTFAKAQPFKDYLANPDAFKSAEPAAAASGGGGA
APAAAKVEEKEEEEEMDLGGGMDMFGAF*
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mRNA from alignment at P-wetherbeei_contig7972:2009..2721-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7972.2.1 ID=mRNA_P-wetherbeei_contig7972.2.1|Name=mRNA_P-wetherbeei_contig7972.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=713bp|location=Sequence derived from alignment at P-wetherbeei_contig7972:2009..2721- (Phaeothamnion wetherbeei SAG_119_79)
ATCTATGATAACGGCTCGCTCTTCGACGCCGCCGTGCTCGACCTCACCGA
GGCCGACCTCCGCGCCAAGTTCCTCACGGCCGTCCGTAACGTCGCCTCCG
CGTCGCTCGCCCTCGGGTGAGGCGGGAATCATATGCTATGCTTCGCTATT
GCGGGGGAGGCAGAAACGTGTTGTGTCTTCTGTCTTCTTGCCTTGGTAAA
AGGTTAGAGAAGGTTTCACGACTGGATGGTTAGCTGGCTGCTGGATGCCG
GAGCTGACAGTCTCTCGGTTCAACGCCCTCTTCCAGGTTTTTGTTAATCT
TTTATTTTATTGTTCTTTACTCGTGACGAGTTGTAAACACATTGGAGTTT
CATTCCTTGCAGTTCAGTTGATTCCTTGACGAAGTGAACTCACTGTCCCG
CCTTTCCCGCCCCCTCCCCATCTCTCCCAAACTTGCTTTCAGGTACCCGA
CGCTGGCGTCGCTGCCACACTCGATCGCCAACGCCTTCAAGGCGCTCGTG
GCCGTGGCGGTGGAGTGCGAGACGTTCACCTTCGCCAAGGCGCAGCCCTT
CAAGGACTACCTGGCCAACCCCGACGCCTTCAAGAGTGCAGAGCCGGCGG
CGGCAGCGAGCGGCGGCGGCGGTGCAGCGCCTGCGGCGGCCAAGGTGGAG
GAGAAAGAGGAGGAGGAAGAGATGGACCTCGGCGGCGGCATGGACATGTT
CGGTGCGTTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7972:2009..2721-

>mRNA_P-wetherbeei_contig7972.2.1 ID=mRNA_P-wetherbeei_contig7972.2.1|Name=mRNA_P-wetherbeei_contig7972.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig7972:2009..2721- (Phaeothamnion wetherbeei SAG_119_79)
ATCTATGATAACGGCTCGCTCTTCGACGCCGCCGTGCTCGACCTCACCGA
GGCCGACCTCCGCGCCAAGTTCCTCACGGCCGTCCGTAACGTCGCCTCCG
CGTCGCTCGCCCTCGGGTACCCGACGCTGGCGTCGCTGCCACACTCGATC
GCCAACGCCTTCAAGGCGCTCGTGGCCGTGGCGGTGGAGTGCGAGACGTT
CACCTTCGCCAAGGCGCAGCCCTTCAAGGACTACCTGGCCAACCCCGACG
CCTTCAAGAGTGCAGAGCCGGCGGCGGCAGCGAGCGGCGGCGGCGGTGCA
GCGCCTGCGGCGGCCAAGGTGGAGGAGAAAGAGGAGGAGGAAGAGATGGA
CCTCGGCGGCGGCATGGACATGTTCGGTGCGTTCTGA
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