mRNA_P-wetherbeei_contig7971.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7971.1.1
Unique NamemRNA_P-wetherbeei_contig7971.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Match: D8LE76_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE76_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.320e-33
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 1
Query:  181 AITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYYYNKHTKEASWERPCLLLRLLGPLADIDRVAPTYADDEAAAMLQAAWRGRLARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALLGSEDLEDY 597
            A+  QR  RG + R   +   N V+EK++ PR  AYYYYN ++ E +W+ P ++ R+LG   D+D +APTY ++EAA MLQAAWR R   R+ R  LA     KVFD  TGA YY+N  + + +W KPAL G+ED+EDY
Sbjct:   11 AVHAQRVVRGFLGRLAAIRQANLVYEKIFDPRTHAYYYYNTYSFETTWQPPAVVTRILGEFGDLDAIAPTYTEEEAAVMLQAAWRRRRGIRMTRALLAS-VVSKVFDESTGAHYYFNGLSGETSWSKPALFGAEDVEDY 148          
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Match: A0A8J2SLX2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SLX2_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.590e-22
Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  175 AAAITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYYYNKHTKEASWERPCLLLRLLGPLADIDRVAPTYADDEAAAMLQAAWRGRLARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALLGSEDLE 591
            AA + +Q   R  + R R    +  V+EK++ P +  YYYYN  T EASW+RP  LL       D+  VAPT+ D++AA  +Q AWR     R VRR +A     KV+D  +   YYYN QT Q +W KP LLGS+D+E
Sbjct:   12 AAVLKIQSLWRRSLVRERTYLELKAVWEKIFDPVQQIYYYYNTVTDEASWKRPAPLL-----WRDLGDVAPTFTDEQAAIYMQCAWRRLKFLRTVRRLVAS-VVSKVYDEHSQNYYYYNAQTGQTSWTKPLLLGSQDIE 144          
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Match: A0A7S3ZML4_9STRA (Hypothetical protein (Fragment) n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZML4_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.030e-21
Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  175 AAAITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYYYNKHTKEASWERPCLLLRLLGPLADIDRVAPTYADDEAAAMLQAAWRGRLARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALLGSEDLE 591
            AA + +Q   R  + R R    +  V+EK++ P +  YYYYN  T EASW+RP  LL       D+  VAPT+ D++AA  +Q AWR     R VRR +A     KV+D  +   YYYN QT Q +W KP LLGS+D+E
Sbjct:   30 AAVLKIQSLWRRSLVRERTYLELKAVWEKIFDPVQQIYYYYNTVTDEASWKRPAPLL-----WRDLGDVAPTFTDEQAAIYMQCAWRRLKFLRTVRRLVAS-VVSKVYDEHSQNYYYYNAQTGQTSWTKPLLLGSQDIE 162          
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Match: K3WKB7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKB7_GLOUD)

HSP 1 Score: 85.1 bits (209), Expect = 4.690e-16
Identity = 55/150 (36.67%), Postives = 75/150 (50.00%), Query Frame = 1
Query:  178 AAITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYYYNKHTKEASWERPCLL------------------LRLLGPLADIDRVAPTYADDEAAAMLQAAWRGRLARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALL 573
            AA  VQRA R       +L L   V+E++Y P +DAYYY+N  TK+ +WE+P +L                  L  L  L D  R    +  D A   LQ  +R R A+R +  RLA + Y K  D ++G  YY N +TQ  +WE PAL+
Sbjct:  209 AATLVQRAYRRKRGFETLLMLCRAVYERIYDPNQDAYYYHNTRTKQTTWEKPAVLRNAQADVFTPRTRQKQQQLETLAHLGDT-RKPRVWTQDTAVVCLQGLFRKRQAQRALHARLA-QVYRKALDPDSGLFYYVNVETQAVSWEPPALV 356          
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Match: A0A6G0XKM6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKM6_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.360e-15
Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 1
Query:  178 AAITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYYYNKHTKEASWERPCLL------------LRLLGPLADIDRVAPTYADDE-AAAMLQAAWRGRLARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALLGSEDLED 594
            AA  +Q   R   AR R+  ++ E ++KV+ P  + ++YYN+ T  + W +P LL                  + D+ R   T    E AA  LQ  +R RLARR +R  +A + Y+KVFDAE+  +YYYN +T ++ W KP LLGS D+E+
Sbjct:  469 AASIIQGLFRKRQARRRLKQIIAETYKKVFDPETNMFFYYNEKTGMSQWAKPTLLGSDDIQAAPRPSKTAQVEMKDVFRGLSTPRRLELAATKLQGMFRSRLARRRLRDLIA-QTYQKVFDAESKMSYYYNTKTGESHWTKPMLLGSSDIEE 619          
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Match: A0A8K1FGZ9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGZ9_PYTOL)

HSP 1 Score: 81.3 bits (199), Expect = 1.910e-14
Identity = 56/158 (35.44%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  178 AAITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYYYNKHTKEASWERPCLL----------------LRLLGPLADIDRVAPTYADDEAAAMLQAAWRGRLARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALL---GSEDLED 594
            AA  VQRA R       +L L   V+E++Y P + AYYY+N  TKE +WE+P LL                L  L   AD ++    + ++ AA  LQ  +R R A++ +  RLA E Y+KV+D  +   YY N +T   +W++PA+L   G  D+E+
Sbjct:  418 AARMVQRAYRRRRGFAMLLNLCRSVYERIYDPDQQAYYYHNTRTKEVTWEKPRLLRNAAADVFSPRTRQQQLSSLWKPADQNKKRVEWTEESAAIRLQGLFRARQAKQELDARLA-EAYKKVWDPSSEQFYYANLKTGAVSWDRPAILVRRGKLDVEE 574          
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Match: A0A2R5GUZ1_9STRA (Peptidylprolyl isomerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUZ1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.510e-14
Identity = 61/155 (39.35%), Postives = 79/155 (50.97%), Query Frame = 1
Query:  178 AAITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYYYNKHTKEASWERPCLL------------LRLLGPLADIDRVAPTYADD----EAAAMLQAAWRGRLARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALLGSEDLED 594
            AA T+Q   R L AR +V TL   VFE+VY     A+YY N      SWE P LL             R     A   R A   A D    EAA  +Q  +R R AR  ++  +A   Y+K FD E G  +YYN +T +++W+KPA LG+EDL+D
Sbjct:   14 AACTLQAWFRALRARVQVRTLAKTVFERVYDEGSAAWYYRNTTNGSTSWEPPLLLPGADNVLTPRARRRFAAQEAKRKRGALKRASDMTESEAARFIQNLFRTRAARNRLKMLIAT-VYQKAFD-EDGNVFYYNTRTGESSWDKPAFLGAEDLDD 166          
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Match: A0A6U1NMK0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A6U1NMK0_CAFRO)

HSP 1 Score: 79.3 bits (194), Expect = 7.890e-14
Identity = 54/148 (36.49%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  175 AAAITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYYYNKHTKEASWERPCLLLRLLG----PLADID------RVAPTYADDEAAAMLQAAWRGRLARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALLGSEDL 588
            AAA+ +Q + RG++ R RV  L+ EV  K++    + YYY+N  + E+ WE+P    RLLG    P    +      R A     ++AA+ LQ+  R R A + V+  LA   + KV D E G  +Y+N  T  + WE+P +LG EDL
Sbjct:  309 AAAVAIQASWRGVLGRARVRALLAEVLRKIWDSNYECYYYFNTASGESFWEKP----RLLGDDDVPAETAEGHVRTGRRAEDMDREQAASKLQSLVRARRATQKVKA-LARSVWAKVADEEYGTGFYFNKLTGDSQWERPVVLGDEDL 451          
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Match: A0A5A8EH46_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EH46_CAFRO)

HSP 1 Score: 79.3 bits (194), Expect = 1.020e-13
Identity = 54/148 (36.49%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  175 AAAITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYYYNKHTKEASWERPCLLLRLLG----PLADID------RVAPTYADDEAAAMLQAAWRGRLARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALLGSEDL 588
            AAA+ +Q + RG++ R RV  L+ EV  K++    + YYY+N  + E+ WE+P    RLLG    P    +      R A     ++AA+ LQ+  R R A + V+  LA   + KV D E G  +Y+N  T  + WE+P +LG EDL
Sbjct:  366 AAAVAIQASWRGVLGRARVRALLAEVLRKIWDSNYECYYYFNTASGESFWEKP----RLLGDDDVPAETAEGHVRTGRRAEDMDREQAASKLQSLVRARRATQKVKA-LARSVWAKVADEEYGTGFYFNKLTGDSQWERPVVLGDEDL 508          
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Match: A0A5D6XZP2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZP2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.780e-13
Identity = 52/176 (29.55%), Postives = 86/176 (48.86%), Query Frame = 1
Query:  112 RREIDNKEVSNMDPPKTSDAAAAAITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYYYNKHTKEASWERPCLLLR----LLGPLADIDRV------------------APTYADDEAAAMLQAAWRGRLARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALL 573
            R E D +         T     AA+ +QRA R       +L L  +V+E+++ P ++AYYY+N  T+E +WE+P LL      +L P +   ++                  +  + ++ AAA LQ  +R R ARR +  RLA + Y +V D ++G  Y+ + +T   +W+ P LL
Sbjct:  399 RAEADERSAKLAVLRATITEGDAAVMLQRAYRRKRGFEALLQLCRQVYERIFDPHQNAYYYHNTRTEETTWEKPALLRNAKADVLSPRSRRQQLEAXXXXXXXXXXXSGSLRSQVWTEESAAACLQTLFRSRRARRALDARLA-QVYRRVLDTDSGCFYFVDTRTDAVSWDAPTLL 573          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7971.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE76_ECTSI2.320e-3347.48Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A8J2SLX2_9STRA9.590e-2243.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZML4_9STRA1.030e-2143.17Hypothetical protein (Fragment) n=3 Tax=Pelagomona... [more]
K3WKB7_GLOUD4.690e-1636.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0XKM6_9STRA3.360e-1536.84Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A8K1FGZ9_PYTOL1.910e-1435.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2R5GUZ1_9STRA2.510e-1439.35Peptidylprolyl isomerase n=1 Tax=Hondaea fermental... [more]
A0A6U1NMK0_CAFRO7.890e-1436.49Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8EH46_CAFRO1.020e-1336.49Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5D6XZP2_9STRA1.780e-1329.55Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7971contigP-wetherbeei_contig7971:1526..2612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LE76
PFAMsLRR_4,LRR_8,WW
Model size597
Max annot lvl2759|Eukaryota
KEGG koko:K19613
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.8e-35
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size453
COG categoryU
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.7934592-UTR-P-wetherbeei_contig7971:1525..16691683187012.7934592-UTR-P-wetherbeei_contig7971:1525..1669Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7971 1526..1669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.8111358-CDS-P-wetherbeei_contig7971:1669..17861683187012.8111358-CDS-P-wetherbeei_contig7971:1669..1786Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7971 1670..1786 +
1683187012.8201442-CDS-P-wetherbeei_contig7971:2276..26121683187012.8201442-CDS-P-wetherbeei_contig7971:2276..2612Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7971 2277..2612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7971.1.1prot_P-wetherbeei_contig7971.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7971 1670..2612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7971.1.1

>prot_P-wetherbeei_contig7971.1.1 ID=prot_P-wetherbeei_contig7971.1.1|Name=mRNA_P-wetherbeei_contig7971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MDPPKTSDAAAAAITVQRAARGLMARTRVLTLVNEVFEKVYAPREDAYYY
YNKHTKEASWERPCLLLRLLGPLADIDRVAPTYADDEAAAMLQAAWRGRL
ARRVVRRRLADECYEKVFDAETGATYYYNHQTQQATWEKPALLGSEDLED
Y
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mRNA from alignment at P-wetherbeei_contig7971:1526..2612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7971.1.1 ID=mRNA_P-wetherbeei_contig7971.1.1|Name=mRNA_P-wetherbeei_contig7971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1087bp|location=Sequence derived from alignment at P-wetherbeei_contig7971:1526..2612+ (Phaeothamnion wetherbeei SAG_119_79)
TTTTTTGCGAAACCAAAGCTCCAAACGGAGAAAATGGGCGTCTGTGATGC ATGCTCTCCAGTTCCATCTCGAGGGCAACATCGGATGCAATTCTGAACGT GCGGCAGAACCCGACGAGAGATTGACAACAAAGAGGTATCCAATATGGAT CCACCGAAAACGAGCGACGCCGCGGCCGCCGCAATCACGGTACAACGTGC AGCACGCGGCTTGATGGCCCGAACGCGGGTGCTGACGCTCGTCAATGAGG TCTTTGAGAAGGTGATGCTTTAAGTAGGACCTGCGCGTCCTGTTTGCCGG CCGGCGTGCAAATTTGAACTTATGTGCGTATGTTAGCGGATGCAGTCAAG GCGGGAATGGTTCCTACGTTCGGCTTCGGCTATACGATGCCTTCAAATTC AGCTAGCAAGACAATCACACAATGTATCAACTCGAGTTGTTTCTCCTCCT TTGTCCAATACAATGTATCAACTCGAGTTGTTTCTCCTCCTTTGTCCAAT AACTAGACTTCCAAGAGTATGCGAAGCTGACACTTCCTTTGGCTCACACT TCTTTCCGATCGGATTTCCTCATTTCGGACGGTTTGGCATCTGGCTGCTG GCGCAGAGCCCGTCTAAGGTTTCTCCTGCCCATCCTGCACACAGCCTCTT CTCCACGCCATTTCTATCCCGCGCCGACTTGCAAAACCGCTCGTTTGCCA CCGCACTGCCCTCCTTCCGCACTGCACCGCTCCGCCGTCGCAAAACCGCA GGTCTACGCCCCGCGCGAAGACGCCTACTACTACTACAACAAACACACCA AAGAGGCCTCCTGGGAGCGGCCCTGCCTTCTGCTGAGGCTGCTGGGCCCG CTCGCCGACATCGACCGCGTCGCGCCGACCTACGCGGACGACGAGGCGGC CGCCATGCTGCAGGCAGCATGGCGCGGGCGGCTGGCACGGCGGGTCGTCC GGCGGCGGCTGGCCGACGAGTGCTACGAGAAGGTGTTCGACGCGGAGACT GGCGCGACGTACTACTACAACCATCAGACACAGCAGGCGACCTGGGAGAA GCCGGCGCTGCTGGGCAGCGAGGACTTGGAGGATTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7971:1526..2612+

>mRNA_P-wetherbeei_contig7971.1.1 ID=mRNA_P-wetherbeei_contig7971.1.1|Name=mRNA_P-wetherbeei_contig7971.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig7971:1526..2612+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCCACCGAAAACGAGCGACGCCGCGGCCGCCGCAATCACGGTACA
ACGTGCAGCACGCGGCTTGATGGCCCGAACGCGGGTGCTGACGCTCGTCA
ATGAGGTCTTTGAGAAGGTCTACGCCCCGCGCGAAGACGCCTACTACTAC
TACAACAAACACACCAAAGAGGCCTCCTGGGAGCGGCCCTGCCTTCTGCT
GAGGCTGCTGGGCCCGCTCGCCGACATCGACCGCGTCGCGCCGACCTACG
CGGACGACGAGGCGGCCGCCATGCTGCAGGCAGCATGGCGCGGGCGGCTG
GCACGGCGGGTCGTCCGGCGGCGGCTGGCCGACGAGTGCTACGAGAAGGT
GTTCGACGCGGAGACTGGCGCGACGTACTACTACAACCATCAGACACAGC
AGGCGACCTGGGAGAAGCCGGCGCTGCTGGGCAGCGAGGACTTGGAGGAT
TAT
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