mRNA_P-wetherbeei_contig797.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig797.2.1
Unique NamemRNA_P-wetherbeei_contig797.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig797.2.1 vs. uniprot
Match: A0A835Z0Q7_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.930e-10
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 QVIIQDNTFGTNKFGINFFVIVCVDGEGRTRAVCQGFLKPEGTEAFTWAFERYMR 165
             VI QD TFGTNK+G+   +IV V+G+ +TR  CQ  L+ E TEAF+W F  Y++
Sbjct:   96 DVIQQDCTFGTNKYGLALSIIVGVNGDSKTRMFCQALLEREDTEAFSWFFVHYVK 150
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BLAST of mRNA_P-wetherbeei_contig797.2.1 vs. uniprot
Match: A0A836CA74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA74_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.950e-10
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 QVIIQDNTFGTNKFGINFFVIVCVDGEGRTRAVCQGFLKPEGTEAFTWAFERYMR 165
             VI QD TFGTNK+G+   +IV V+G+ +TR  CQ  L+ E TEAF+W F  Y++
Sbjct:  221 DVIQQDCTFGTNKYGLALSIIVGVNGDSKTRMFCQALLEREDTEAFSWFFVHYVK 275
[Close]
BLAST of mRNA_P-wetherbeei_contig797.2.1 vs. uniprot
Match: A0A835Z7W2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7W2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.890e-9
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 QVIIQDNTFGTNKFGINFFVIVCVDGEGRTRAVCQGFLKPEGTEAFTWAFERYMR 165
             VI QD T GTNK+G+   +IV V+G+ +TR  CQ  L+ E TEAF+W F  Y++
Sbjct:  273 DVIQQDCTLGTNKYGLALSIIVGVNGDSKTRMFCQALLEREDTEAFSWFFVHYVK 327
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig797.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z0Q7_9STRA5.930e-1050.91SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CA74_9STRA5.950e-1050.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7W2_9STRA3.890e-949.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig797contigP-wetherbeei_contig797:1854..2202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog102107.XP_008244300.1
PFAMsFAR1,MULE,SWIM
Model size172
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue7.59e-06
EggNOG OGs2CMNZ@1|root,2QR4C@2759|Eukaryota,37R7C@33090|Viridiplantae,3GEJS@35493|Streptophyta,4JFXG@91835|fabids
DescriptionProtein FAR1-RELATED SEQUENCE 5-like
Cds size168
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.6137626-CDS-P-wetherbeei_contig797:1855..19371683187012.6137626-CDS-P-wetherbeei_contig797:1855..1937Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig797 1856..1937 -
1683187012.6264515-CDS-P-wetherbeei_contig797:2116..22021683187012.6264515-CDS-P-wetherbeei_contig797:2116..2202Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig797 2117..2202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig797.2.1prot_P-wetherbeei_contig797.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig797 1856..2202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig797.2.1

>prot_P-wetherbeei_contig797.2.1 ID=prot_P-wetherbeei_contig797.2.1|Name=mRNA_P-wetherbeei_contig797.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
QVIIQDNTFGTNKFGINFFVIVCVDGEGRTRAVCQGFLKPEGTEAFTWAF
ERYMRF
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mRNA from alignment at P-wetherbeei_contig797:1854..2202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig797.2.1 ID=mRNA_P-wetherbeei_contig797.2.1|Name=mRNA_P-wetherbeei_contig797.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=349bp|location=Sequence derived from alignment at P-wetherbeei_contig797:1854..2202- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTCATCATTCAAGACAACACCTTCGGGACCAATAAGTTCGGCATCAA
TTTTTTCGTCATCGTCTGCGTTGACGGCGAGGGCAGGTGCGGAGGAGGTT
TTCCAGAAATACCCTGCTGACCGCCATTTCTTCTGACCAATTTTTTCTGA
CCAATAAAAAGCATTAGCGCTCTGTTTTGGCCAAAAGCCCTGACTCCTCT
GTGGTCATTATAAGAGGCGTAACAAAGGTTTTCCTTCCCGTTCTTGATGT
GGGTGCCCGTCGCAGAACAAGGGCGGTTTGTCAGGGCTTCTTGAAGCCAG
AAGGCACGGAAGCCTTCACGTGGGCGTTCGAGCGCTACATGAGATTTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig797:1854..2202-

>mRNA_P-wetherbeei_contig797.2.1 ID=mRNA_P-wetherbeei_contig797.2.1|Name=mRNA_P-wetherbeei_contig797.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig797:1854..2202- (Phaeothamnion wetherbeei SAG_119_79)
CAGGTCATCATTCAAGACAACACCTTCGGGACCAATAAGTTCGGCATCAA
TTTTTTCGTCATCGTCTGCGTTGACGGCGAGGGCAGAACAAGGGCGGTTT
GTCAGGGCTTCTTGAAGCCAGAAGGCACGGAAGCCTTCACGTGGGCGTTC
GAGCGCTACATGAGATTT
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