mRNA_P-wetherbeei_contig797.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig797.3.1
Unique NamemRNA_P-wetherbeei_contig797.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig797.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig797contigP-wetherbeei_contig797:116..2683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2373
Hectar predicted targeting categorymitochondrion
Exons2
Cds size1254
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.554971-CDS-P-wetherbeei_contig797:115..13691683187012.554971-CDS-P-wetherbeei_contig797:115..1369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig797 116..1369 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.565928-UTR-P-wetherbeei_contig797:1369..23911683187012.565928-UTR-P-wetherbeei_contig797:1369..2391Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig797 1370..2391 -
1683187012.5756152-UTR-P-wetherbeei_contig797:2587..26831683187012.5756152-UTR-P-wetherbeei_contig797:2587..2683Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig797 2588..2683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig797.3.1prot_P-wetherbeei_contig797.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig797 116..1369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig797.3.1

>prot_P-wetherbeei_contig797.3.1 ID=prot_P-wetherbeei_contig797.3.1|Name=mRNA_P-wetherbeei_contig797.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=418bp
MRKYLDGLCSRRELWARYSRLRVFSLGMTATSRIESFFSAFKANMDRVAG
ITDAVQILADLNMKWDIRSVEDRERAVKDSSVKVESQLAAHFLDVLHYTD
TFSTAFIQRLTRRQINRCAYYEVTPINVEAVLAAGRTAAAAAAAVAGGAS
GVPAAAAAAAASGGTVSGAVAAAGIGGSAAGPSFAAGGADAADESADADP
DDPNTMDDRPRIASGAIGAAFRGRIVRAFSVAPPRRPGWGANDAGRVKRS
NLVTILDDGTHICSCAMPMTFGVACRHYYACRFRDGIVHVPFIFGQWHPR
WLREVFARLPRGGGAGGGVVAAVASGRGAGGAVAGVASGAAAGGDAQLPS
DVTTTQLCVQYDGISAATTAAFLGNDGDEEEQLGAADDMLVDPPSPGSGS
GGPAGAPNEDDFGTGAVV
back to top

mRNA from alignment at P-wetherbeei_contig797:116..2683-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig797.3.1 ID=mRNA_P-wetherbeei_contig797.3.1|Name=mRNA_P-wetherbeei_contig797.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2568bp|location=Sequence derived from alignment at P-wetherbeei_contig797:116..2683- (Phaeothamnion wetherbeei SAG_119_79)
CTGCGGCACAAGACGTCCAAGATTGTGAGCCTCGTCCAAGAGTGGCGCAA
GGAGCCGGACATCATGCGCGTTCTGAGCACGGGCGCCCGTAAAAAGGTGT
GTTTTGAAGTTCCGGCGTGTTTGGCCGTCTGGCCGTCATCGGCTGTCCTC
GTTGATTGCTGTATGCTGAAGGACGGCGCGCGTATCGAGACAACAGGTGT
TTGTTTCTCGTGTTCGTGAGCCGTGACTGGCTGGCTGGTTTGCTGATCGT
TGACTGCCTGGCCTTTCACCTGTTGTGATTTTGCTGGGGCAGGTGGAGGG
TATTGTAAGGCGGGTCATTGAAAAACGTAAGCAGCTGGTGGATGACGCCC
AAACTGTGCTGCACTTCTTGCAAGGCCAAAACGCCGACTGCAAGTGGGAT
CTCTGGGTCGACGACGACAACAGGCTGTTGGGGGTTATCTGGTCGACTTC
GGCGCAGCAAGACCTTGCCCGCAAGTACGGCCAGGTCATCATTCAAGACA
ACACCTTCGGGACCAATAAGTTCGGCATCAATTTTTTCGTCATCGTCTGC
GTTGACGGCGAGGGCAGGTGCGGAGGAGGTTTTCCAGAAATACCCTGCTG
ACCGCCATTTCTTCTGACCAATTTTTTCTGACCAATAAAAAGCATTAGCG
CTCTGTTTTGGCCAAAAGCCCTGACTCCTCTGTGGTCATTATAAGAGGCG
TAACAAAGGTTTTCCTTCCCGTTCTTGATGTGGGTGCCCGTCGCAGAACA
AGGGCGGTTTGTCAGGGCTTCTTGAAGCCAGAAGGCACGGAAGCCTTCAC
GTGGGCGTTCGAGCGCTACATGAGATTTTGCTGCGACGATGGCAAATTCC
CGCCGGCGGTCATCCTCACGGATGATTGCTTGGCGGCGGCAGCCGGAATC
CGGGCGGCAATGCCGACGACGAAGCGTTTTCTTTGCTCCTGGCACCTGTG
GAAGAACGTCAAGCAGAAGCTCGACGAGTACATGAGGGGCAGCCCTCCCG
AAGTCGTGGCAGCATGCCGCAAGCTCTTTCGCGCCGCGGAGTTCGCCAAC
ACAGAAGAAGCCTTCTACGAAGCCTGGCGTGACTTGATGGTGAGTCGTCG
GCCGGGGCGTGGGTATGCCGTCGTCTTTGCTGCTGGCTAATTACACGGTT
TTGAGATATCGAAAACGGGCTGGTCACCTGCCTCAGAGGGCTGCGGCAGC
CAACTTCTTTCCCTTCTTCCTTTCATCATCGGCGGGGGTGACTGTTTGAT
TTGCCCTCTTTTTTATAATGTTTTCCTGTTATTGCTGCTTCAGGCGCTCG
CGCTGGAGGACGGAATGCGCAAGTACCTCGACGGCCTGTGCTCGAGGAGG
GAGTTGTGGGCACGCTACTCCCGCCTGCGGGTGTTCAGCTTGGGCATGAC
GGCGACTTCACGCATTGAGTCCTTCTTCTCTGCGTTCAAGGCCAACATGG
ATCGCGTGGCCGGGATAACCGACGCGGTTCAGATCCTGGCCGACCTCAAC
ATGAAGTGGGACATCCGATCGGTGGAGGATAGGGAGAGGGCGGTGAAGGA
TTCGTCCGTGAAGGTGGAATCGCAGCTCGCTGCCCATTTCCTGGACGTCT
TGCACTACACCGACACGTTCTCGACAGCCTTCATCCAGAGGCTGACACGG
CGACAAATCAACAGGTGCGCCTATTACGAGGTCACGCCAATCAACGTGGA
GGCAGTGCTCGCGGCTGGTCGCACCGCCGCCGCGGCCGCTGCGGCGGTGG
CAGGCGGTGCTTCGGGCGTTCCAGCAGCTGCTGCTGCTGCCGCCGCAAGC
GGCGGCACGGTCTCTGGGGCTGTTGCGGCCGCGGGGATTGGAGGTTCTGC
AGCCGGGCCTTCTTTCGCGGCGGGCGGCGCCGATGCTGCAGACGAGTCTG
CGGATGCCGACCCCGATGACCCAAACACGATGGACGACAGGCCCCGCATC
GCCTCTGGCGCCATCGGGGCCGCTTTCCGTGGCAGGATCGTGCGAGCGTT
TTCTGTCGCGCCGCCGCGGCGGCCAGGCTGGGGCGCTAACGATGCTGGTC
GTGTGAAGAGATCGAACTTAGTCACCATCTTGGACGACGGCACGCATATT
TGCTCGTGCGCAATGCCGATGACGTTCGGAGTCGCGTGCCGGCACTACTA
CGCATGCCGCTTTCGTGACGGCATCGTGCACGTACCCTTCATCTTCGGCC
AGTGGCATCCCCGGTGGCTTCGCGAGGTTTTCGCGCGATTGCCGCGAGGA
GGTGGCGCCGGCGGCGGGGTGGTGGCAGCAGTAGCTAGCGGGCGAGGAGC
GGGCGGAGCGGTGGCAGGAGTAGCTAGCGGGGCTGCGGCAGGCGGCGATG
CTCAGTTGCCGTCAGATGTCACGACGACACAGTTGTGTGTTCAGTACGAC
GGCATCTCAGCGGCGACCACTGCGGCGTTCCTTGGCAACGACGGCGACGA
GGAGGAGCAGCTCGGCGCCGCGGATGATATGCTGGTGGACCCACCGTCGC
CTGGCAGCGGCAGCGGCGGGCCGGCCGGCGCCCCCAATGAAGATGATTTC
GGCACGGGCGCAGTCGTT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig797:116..2683-

>mRNA_P-wetherbeei_contig797.3.1 ID=mRNA_P-wetherbeei_contig797.3.1|Name=mRNA_P-wetherbeei_contig797.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1254bp|location=Sequence derived from alignment at P-wetherbeei_contig797:116..2683- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAAGTACCTCGACGGCCTGTGCTCGAGGAGGGAGTTGTGGGCACG
CTACTCCCGCCTGCGGGTGTTCAGCTTGGGCATGACGGCGACTTCACGCA
TTGAGTCCTTCTTCTCTGCGTTCAAGGCCAACATGGATCGCGTGGCCGGG
ATAACCGACGCGGTTCAGATCCTGGCCGACCTCAACATGAAGTGGGACAT
CCGATCGGTGGAGGATAGGGAGAGGGCGGTGAAGGATTCGTCCGTGAAGG
TGGAATCGCAGCTCGCTGCCCATTTCCTGGACGTCTTGCACTACACCGAC
ACGTTCTCGACAGCCTTCATCCAGAGGCTGACACGGCGACAAATCAACAG
GTGCGCCTATTACGAGGTCACGCCAATCAACGTGGAGGCAGTGCTCGCGG
CTGGTCGCACCGCCGCCGCGGCCGCTGCGGCGGTGGCAGGCGGTGCTTCG
GGCGTTCCAGCAGCTGCTGCTGCTGCCGCCGCAAGCGGCGGCACGGTCTC
TGGGGCTGTTGCGGCCGCGGGGATTGGAGGTTCTGCAGCCGGGCCTTCTT
TCGCGGCGGGCGGCGCCGATGCTGCAGACGAGTCTGCGGATGCCGACCCC
GATGACCCAAACACGATGGACGACAGGCCCCGCATCGCCTCTGGCGCCAT
CGGGGCCGCTTTCCGTGGCAGGATCGTGCGAGCGTTTTCTGTCGCGCCGC
CGCGGCGGCCAGGCTGGGGCGCTAACGATGCTGGTCGTGTGAAGAGATCG
AACTTAGTCACCATCTTGGACGACGGCACGCATATTTGCTCGTGCGCAAT
GCCGATGACGTTCGGAGTCGCGTGCCGGCACTACTACGCATGCCGCTTTC
GTGACGGCATCGTGCACGTACCCTTCATCTTCGGCCAGTGGCATCCCCGG
TGGCTTCGCGAGGTTTTCGCGCGATTGCCGCGAGGAGGTGGCGCCGGCGG
CGGGGTGGTGGCAGCAGTAGCTAGCGGGCGAGGAGCGGGCGGAGCGGTGG
CAGGAGTAGCTAGCGGGGCTGCGGCAGGCGGCGATGCTCAGTTGCCGTCA
GATGTCACGACGACACAGTTGTGTGTTCAGTACGACGGCATCTCAGCGGC
GACCACTGCGGCGTTCCTTGGCAACGACGGCGACGAGGAGGAGCAGCTCG
GCGCCGCGGATGATATGCTGGTGGACCCACCGTCGCCTGGCAGCGGCAGC
GGCGGGCCGGCCGGCGCCCCCAATGAAGATGATTTCGGCACGGGCGCAGT
CGTT
back to top