mRNA_P-wetherbeei_contig7963.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7963.1.1
Unique NamemRNA_P-wetherbeei_contig7963.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7963.1.1 vs. uniprot
Match: A0A7X8XPH9_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XPH9_9BURK)

HSP 1 Score: 58.2 bits (139), Expect = 2.240e-8
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:   22 RMGFVVRFRPQAHKILGNSVRATIDLQTRIVEVFQPAIEELSLRLSQDLRPLALPL---VLAHELFHALDPKCAEP--ELSAHLFAAIVCEYPHFPGLLDLTDS 318
            + GF +R   Q+  I G  VRA +     +V +    + +L+ RL++  R L  P    +LAHELFH L+P C EP  EL+AHLFA        FPG +DL D+
Sbjct:   36 KRGFQIRL--QSLSIPGTLVRARVLPHRGLVFLDPEGMADLAERLAR--RGLPGPTRERILAHELFHILEPACPEPLAELAAHLFAGAFLHLRDFPGAIDLPDT 135
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BLAST of mRNA_P-wetherbeei_contig7963.1.1 vs. uniprot
Match: A0A7X8XJU1_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XJU1_9BURK)

HSP 1 Score: 54.3 bits (129), Expect = 3.450e-7
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  190 VLAHELFHALDPKCAEP--ELSAHLFAAIVCEYPHFPGLLDLTDS 318
            +LAHELFH L+P C EP  EL+AHLFA        FPG +DL D+
Sbjct:   57 ILAHELFHILEPACPEPLAELAAHLFAGAFLNLRDFPGAIDLPDT 101
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7963.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X8XPH9_9BURK2.240e-839.42Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A7X8XJU1_9BURK3.450e-755.56Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7963contigP-wetherbeei_contig7963:355..681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size327
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.132986-UTR-P-wetherbeei_contig7963:354..3781683187012.132986-UTR-P-wetherbeei_contig7963:354..378Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7963 355..378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187012.1532552-CDS-P-wetherbeei_contig7963:378..6811683187012.1532552-CDS-P-wetherbeei_contig7963:378..681Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7963 379..681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7963.1.1prot_P-wetherbeei_contig7963.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7963 379..681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7963.1.1

>prot_P-wetherbeei_contig7963.1.1 ID=prot_P-wetherbeei_contig7963.1.1|Name=mRNA_P-wetherbeei_contig7963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MGFVVRFRPQAHKILGNSVRATIDLQTRIVEVFQPAIEELSLRLSQDLRP
LALPLVLAHELFHALDPKCAEPELSAHLFAAIVCEYPHFPGLLDLTDSAK
*
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mRNA from alignment at P-wetherbeei_contig7963:355..681+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7963.1.1 ID=mRNA_P-wetherbeei_contig7963.1.1|Name=mRNA_P-wetherbeei_contig7963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig7963:355..681+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCTCCTGGACCAGTGCGCGCGGATGGGTTTCGTCGTGCGCTTTCGACC
CCAGGCTCACAAAATTCTGGGCAACAGCGTGCGCGCCACTATCGACTTGC
AGACCCGTATCGTGGAAGTGTTCCAACCGGCCATCGAAGAGCTGTCTCTA
CGGCTTTCCCAGGATCTGCGCCCCCTCGCGCTGCCCCTGGTTCTGGCCCA
CGAGCTCTTTCACGCCCTCGATCCCAAATGCGCCGAGCCGGAGCTATCGG
CTCATCTGTTTGCCGCGATTGTGTGCGAATACCCCCACTTCCCGGGGCTG
CTCGACCTTACGGACTCTGCAAAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7963:355..681+

>mRNA_P-wetherbeei_contig7963.1.1 ID=mRNA_P-wetherbeei_contig7963.1.1|Name=mRNA_P-wetherbeei_contig7963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig7963:355..681+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTTTCGTCGTGCGCTTTCGACCCCAGGCTCACAAAATTCTGGGCAA
CAGCGTGCGCGCCACTATCGACTTGCAGACCCGTATCGTGGAAGTGTTCC
AACCGGCCATCGAAGAGCTGTCTCTACGGCTTTCCCAGGATCTGCGCCCC
CTCGCGCTGCCCCTGGTTCTGGCCCACGAGCTCTTTCACGCCCTCGATCC
CAAATGCGCCGAGCCGGAGCTATCGGCTCATCTGTTTGCCGCGATTGTGT
GCGAATACCCCCACTTCCCGGGGCTGCTCGACCTTACGGACTCTGCAAAA
TGA
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