mRNA_P-wetherbeei_contig7960.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7960.1.1
Unique NamemRNA_P-wetherbeei_contig7960.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7960.1.1 vs. uniprot
Match: A0A3C0TSS8_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TSS8_9PROT)

HSP 1 Score: 117 bits (293), Expect = 1.210e-29
Identity = 111/166 (66.87%), Postives = 126/166 (75.90%), Query Frame = 1 
Query:    1 MIIRL-IALLLLAAVPAMAAEDQTPAAPKLAQQQVRDTLLEQLQRQVGEAQTRADEAERRXXXXXXXXXXXXXXXXXXXXXXXXXLKLAAQHELSIQEAKAELQNSAYSRLEILIGVFGALITAIVVFFAWNTKDAAVAAAKSGVEDIRGKLDARLVEAEILVGKI 495
            M+IRL IALLL A VPAMAAE  +     +AQQQ RD LLEQLQ Q+ +A  RA E    XXXXXXXXXXXXXXXXXXXXXXXXX     Q ELS+QEA+ ELQ+ AYSRLEILIGVFG LIT +V+FFA  T+ AAV AA++GVEDIR KL+ RL EAE L+ KI
Sbjct:    1 MMIRLCIALLLFAFVPAMAAERLSV----IAQQQTRDPLLEQLQIQLRQADARAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRELSLQEARTELQDQAYSRLEILIGVFGVLITILVIFFALRTEKAAVTAARAGVEDIREKLEKRLAEAETLLEKI 162
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BLAST of mRNA_P-wetherbeei_contig7960.1.1 vs. uniprot
Match: A0A1L6J7L2_9SPHN (Uncharacterized protein n=2 Tax=Sphingomonas koreensis TaxID=93064 RepID=A0A1L6J7L2_9SPHN)

HSP 1 Score: 53.9 bits (128), Expect = 1.810e-5
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  280 SIQEAKAELQNSAYSRLEILIGVFGALITAIVVFFAWNTKDAAVAAAKSGVEDIRGKLDARL 465
            +I +AK EL  +  SRLEI+IG FG +I  + + F + T++AA+AAA  G+E +R +++  L
Sbjct:   60 AILDAKQELLEAGTSRLEIIIGAFGVVIAFVAIIFGFATREAAIAAATRGIEQVRDQMETTL 121
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BLAST of mRNA_P-wetherbeei_contig7960.1.1 vs. uniprot
Match: UPI00130510BE (hypothetical protein n=1 Tax=Sphingomonas sp. Cra20 TaxID=1327635 RepID=UPI00130510BE)

HSP 1 Score: 52.4 bits (124), Expect = 6.550e-5
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  280 SIQEAKAELQNSAYSRLEILIGVFGALITAIVVFFAWNTKDAAVAAAKSGVEDIRGKLDARLVEAE 477
            +I  AK E+ +S++ RLEILIG+FG L+T +V+ F + T+ AA  AA++ + D R ++DA +  A+
Sbjct:   55 AIISAKEEISSSSHDRLEILIGLFGLLLTILVIGFGFRTEKAAAKAAQAEIADRRKEIDAIIDSAK 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7960.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3C0TSS8_9PROT1.210e-2966.87Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A1L6J7L2_9SPHN1.810e-541.94Uncharacterized protein n=2 Tax=Sphingomonas koree... [more]
UPI00130510BE6.550e-542.42hypothetical protein n=1 Tax=Sphingomonas sp. Cra2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7960contigP-wetherbeei_contig7960:3..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size495
Hectar predicted targeting categorysignal peptide
Exons1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187011.8804224-CDS-P-wetherbeei_contig7960:2..4971683187011.8804224-CDS-P-wetherbeei_contig7960:2..497Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7960 3..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7960.1.1prot_P-wetherbeei_contig7960.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7960 3..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7960.1.1

>prot_P-wetherbeei_contig7960.1.1 ID=prot_P-wetherbeei_contig7960.1.1|Name=mRNA_P-wetherbeei_contig7960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MIIRLIALLLLAAVPAMAAEDQTPAAPKLAQQQVRDTLLEQLQRQVGEAQ
TRADEAERRERDAEIQRLADQAKQAQARAGEEEQLKLAAQHELSIQEAKA
ELQNSAYSRLEILIGVFGALITAIVVFFAWNTKDAAVAAAKSGVEDIRGK
LDARLVEAEILVGKI
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mRNA from alignment at P-wetherbeei_contig7960:3..497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7960.1.1 ID=mRNA_P-wetherbeei_contig7960.1.1|Name=mRNA_P-wetherbeei_contig7960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig7960:3..497- (Phaeothamnion wetherbeei SAG_119_79)
ATGATAATCCGGTTGATAGCACTGCTGCTGCTTGCCGCAGTCCCGGCCAT
GGCGGCGGAGGATCAAACGCCCGCAGCACCCAAGCTGGCGCAACAACAGG
TGCGCGACACCCTGCTTGAACAATTGCAGCGGCAGGTGGGGGAAGCACAA
ACCCGCGCCGACGAGGCCGAGCGGCGCGAACGCGATGCGGAAATCCAACG
GCTGGCGGATCAGGCAAAGCAAGCACAGGCCCGCGCCGGTGAGGAGGAAC
AACTCAAACTTGCCGCGCAGCACGAATTATCAATACAGGAAGCGAAAGCC
GAACTGCAAAATAGCGCCTATTCGCGGTTAGAAATATTGATCGGTGTGTT
TGGCGCATTGATCACAGCGATTGTTGTTTTCTTTGCCTGGAACACAAAAG
ATGCGGCCGTCGCAGCGGCCAAGTCTGGTGTTGAGGATATTCGCGGGAAG
CTGGACGCCCGGTTGGTAGAAGCCGAAATTCTGGTCGGAAAAATA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7960:3..497-

>mRNA_P-wetherbeei_contig7960.1.1 ID=mRNA_P-wetherbeei_contig7960.1.1|Name=mRNA_P-wetherbeei_contig7960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig7960:3..497- (Phaeothamnion wetherbeei SAG_119_79)
ATGATAATCCGGTTGATAGCACTGCTGCTGCTTGCCGCAGTCCCGGCCAT
GGCGGCGGAGGATCAAACGCCCGCAGCACCCAAGCTGGCGCAACAACAGG
TGCGCGACACCCTGCTTGAACAATTGCAGCGGCAGGTGGGGGAAGCACAA
ACCCGCGCCGACGAGGCCGAGCGGCGCGAACGCGATGCGGAAATCCAACG
GCTGGCGGATCAGGCAAAGCAAGCACAGGCCCGCGCCGGTGAGGAGGAAC
AACTCAAACTTGCCGCGCAGCACGAATTATCAATACAGGAAGCGAAAGCC
GAACTGCAAAATAGCGCCTATTCGCGGTTAGAAATATTGATCGGTGTGTT
TGGCGCATTGATCACAGCGATTGTTGTTTTCTTTGCCTGGAACACAAAAG
ATGCGGCCGTCGCAGCGGCCAAGTCTGGTGTTGAGGATATTCGCGGGAAG
CTGGACGCCCGGTTGGTAGAAGCCGAAATTCTGGTCGGAAAAATA
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