mRNA_P-wetherbeei_contig796.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig796.1.1
Unique NamemRNA_P-wetherbeei_contig796.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig796.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig796contigP-wetherbeei_contig796:568..5228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2615
Hectar predicted targeting categorysignal anchor
Exons7
Cds size1737
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig796.1.1prot_P-wetherbeei_contig796.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig796 878..4660 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187011.7594163-UTR-P-wetherbeei_contig796:567..8771683187011.7594163-UTR-P-wetherbeei_contig796:567..877Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig796 568..877 -
1683187011.8419096-UTR-P-wetherbeei_contig796:4660..52281683187011.8419096-UTR-P-wetherbeei_contig796:4660..5228Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig796 4661..5228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187011.7690701-CDS-P-wetherbeei_contig796:877..10881683187011.7690701-CDS-P-wetherbeei_contig796:877..1088Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig796 878..1088 -
1683187011.7814548-CDS-P-wetherbeei_contig796:1474..15941683187011.7814548-CDS-P-wetherbeei_contig796:1474..1594Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig796 1475..1594 -
1683187011.7932658-CDS-P-wetherbeei_contig796:1989..20721683187011.7932658-CDS-P-wetherbeei_contig796:1989..2072Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig796 1990..2072 -
1683187011.8025784-CDS-P-wetherbeei_contig796:2450..25481683187011.8025784-CDS-P-wetherbeei_contig796:2450..2548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig796 2451..2548 -
1683187011.811363-CDS-P-wetherbeei_contig796:2825..29801683187011.811363-CDS-P-wetherbeei_contig796:2825..2980Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig796 2826..2980 -
1683187011.820781-CDS-P-wetherbeei_contig796:3383..36021683187011.820781-CDS-P-wetherbeei_contig796:3383..3602Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig796 3384..3602 -
1683187011.83112-CDS-P-wetherbeei_contig796:3809..46601683187011.83112-CDS-P-wetherbeei_contig796:3809..4660Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig796 3810..4660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig796.1.1

>prot_P-wetherbeei_contig796.1.1 ID=prot_P-wetherbeei_contig796.1.1|Name=mRNA_P-wetherbeei_contig796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=579bp
MGAEPWREHVRAPAAMASPPTIALEVFDRCSLSCLLCCQYFIVLLVFLST
YTLFVNINDGEILLLPCEDAFTSAGTTYTSASAGDASAEITMSVYNWLNE
WSDCYAMEPIYLSNSFSLVVGDDKVDNKGAAFLTARGCYYSPPPGTTEYG
SFESLVLVESCQLVYTTAIDSVALGLSVRNSSFPRLRRASSATTDEIDGQ
FLTDETGSGTAGTDFESDGETAEIPYEIWAEGCSTESCSAERALPVVNDG
LQMLSDAVDEDFQVDEESGAVTNVTASINVFLYSNLHNMMRHAKYALVLP
PGSGLLDGTVEEASISLAFRTRPALALLCWLSLILLGILGASWAARLWRL
THGKTGRPWIVEWKWLSGVLAAAVLLANPLGLVLAAQPVSVGNEDRRFYS
LFAADTMNATGTVLVWLGYWLLADRPRLDGLSHRRSFYLPKVGVTLAAWC
TRVASIMLCYPFIWGRPHRQLLAPQSWTYGRQVALVVFAALDQAISLFVV
GCILFCTYRSRQILRRLPYLRYRRVQLAFRLYAWLSVIGWVVMAAVTVAG
VVQSAVFHRRGGGGSSTVQVHVADFCWE*
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mRNA from alignment at P-wetherbeei_contig796:568..5228-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig796.1.1 ID=mRNA_P-wetherbeei_contig796.1.1|Name=mRNA_P-wetherbeei_contig796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4661bp|location=Sequence derived from alignment at P-wetherbeei_contig796:568..5228- (Phaeothamnion wetherbeei SAG_119_79)
TGCCAGGCAATTTATCCACCAAGACGAGGATGGGGCGACAATCGACCCTT
TCGCTCGGGGACGTGACCATCTCGGCACCAACGACGGCGACACTTTGCTT
CTAGACGATGGCGAAGAAGACGCGCCTCCTCCTCGTCGACGACTGGAGCG
CCTCCCCTCGCGGCGTCGACGCTCCTTCTTCGACGCCGTCGGCCTGTCTC
TGAATATCGGGAGGCATTCGTCGCTTGCTTCCGTTCCATCGCCGTGGGGA
GACTGTCCCGACGGCGGCGACGCTGTAGCCGACGCAGAGAGCTGCGACGC
GGATCATCGCCGCCACCGCGTTTCGGCTGCGCACGATGGCGCCTCCGATG
ACGATCCGCGATGCCTTGGCGAAGCCCCGCCACAGGAAGAAGCCAAAAGC
GATTTATTGGGAGAGTTCTCTGCGGCGGACAAAACCGCAGCTTCCACCGA
CGCCGACGCCGACTATGCCGACGCTAAAGATGGCGCCAATTCCACCGCCG
ACAGCGCTGCGGATGGGACCCCCGGCCTCCTCCTGCGCAACGACCGGCAC
GGCAAGCCGTTGCGCCGCATGGGTGCCGAGCCATGGCGAGAACATGTGCG
GGCGCCGGCCGCCATGGCGAGCCCGCCGACCATCGCGCTGGAGGTATTTG
ACCGCTGCTCGCTCTCCTGCCTTCTCTGCTGCCAGTACTTCATCGTGCTG
CTGGTCTTTCTGTCGACCTACACACTGTTTGTCAACATCAACGACGGCGA
GATCTTGCTGCTCCCGTGCGAGGACGCCTTCACCTCTGCGGGAACAACGT
ACACCAGCGCCAGCGCCGGGGACGCCAGCGCCGAAATCACAATGTCTGTG
TACAACTGGCTCAACGAATGGTCGGACTGCTACGCCATGGAACCCATCTA
TTTGAGCAACAGCTTCTCGCTGGTGGTCGGCGACGACAAGGTAGACAACA
AGGGCGCCGCTTTTCTGACGGCGCGCGGCTGCTACTACTCGCCGCCGCCG
GGCACTACCGAGTACGGCTCTTTCGAGAGTCTTGTGTTGGTCGAGAGCTG
CCAGCTCGTCTACACAACGGCGATTGACTCGGTAGCCCTTGGGCTCTCCG
TTCGCAATAGTTCATTTCCCCGCCTCCGCCGCGCCAGCTCTGCCACCACC
GACGAAATCGACGGCCAATTCTTGACGGACGAAACCGGCAGCGGAACCGC
GGGAACCGATTTTGAAAGCGACGGCGAAACGGCGGAGATTCCGTACGAGA
TTTGGGCGGAGGGGTGCTCGACGGAGAGCTGCAGCGCGGAGCGGGCACTG
CCCGTGGTGAACGACGGCCTGCAGATGCTGTCGGACGCCGTCGACGAGGA
TTTTCAGGTGGACGAAGAGAGCGGCGCGGTGACCAACGTCACCGCGAGCA
TCAACGTATTTCTGTACAGGTGCGGGTTTGTTTTTTATCGTGCTTTTCGG
TGCGGCGTGCAGAATGTTAAATTCCAAACTCCATCTCAAACGGCATCGGA
AACGTTCGGCATTTTATCCATGAGACCACGCTCAGTCGGCCAGAATCGTT
GTTCGTAACCTGCGTTTTATCATCCGCTACTGGCCGCTCTCGGCGAACCT
TCAAATCTCGAAAACCGCGCGCACAGCAACCTCCACAACATGATGCGGCA
CGCCAAGTACGCCCTGGTTCTGCCGCCGGGCTCCGGACTCCTGGACGGAA
CCGTCGAGGAAGCTTCCATCTCGCTGGCGTTCCGGACGCGGCCGGCGCTG
GCGCTGCTTTGCTGGCTGTCGCTGATCCTGCTTGGAATATTGGGTGCATC
GTGGGCGGCGAGGCTGTGGCGGCTCACCCACGGCAAAACCGGCAGGTGAG
AGGGACCGAAGGGGAGGAAAGGAGACGGAAGGGATTTTAATGGGGCCGGC
GTGCATGGATAGGAAAAATGCCTCGGCCGGAGGGATGGCAGCTGGCATTC
TGTGTCGGTTTTTCCTCGGGACCATTCGTGTAATCATTCTTTCTGTTCTT
GGGATTGAAATCTGCCCAGAGCTTGGAGACATTGTGACCAATGCTGCCGC
GATGACGACTCCTGCTGCGGCGGCGTCCTTGGTGGTTCCTTTGGTGGCTT
TGGCGACAAGGACGACTGCAATGACGGCGGCTGTTGCTCCTGCCGCTGCT
TACCGCTGACAACGTGCGCTCTCGCTCCTACCGCCGTTGCTATGACTACT
GCCGGCGTGTTCGTTAAATTCATTACGTGCCGGCCGGAGAGAGAGCAGGC
CGTGGATCGTGGAGTGGAAGTGGCTGAGCGGTGTGCTCGCGGCGGCCGTG
CTGCTGGCCAATCCGCTTGGCCTCGTGCTCGCGGCGCAGCCCGTCTCGGT
CGGGAACGAGGACCGCCGCTTCTATTCTCTCTTCGCGGCCGACACCATGA
ACGGTGAGTGGAAGAAATCGGGCAGCCTTCGGCGGTATCGGGCGGTATCA
GGCGGTTTCGACTGTTTCGGCAGTTTTGGATTTCGGGCTGCTGCTTCGTT
TGCTGCTGCAGTTTTCTTGCCGGTCGCCATTGCTGCGCGAGCTCGCAGGA
AACAGAATTCATCGTCAGAGTTCTGACGCCATGCCCTTATTTTCGTTCCT
TTCTCTCTCTGTTAATTGCGGTTTGAACAAGTGAATTCGTCGTTTCCCGC
CGTTTCATCGCGCTCTGTTTTGTGTTCCAGCCACGGGCACGGTGCTGGTA
TGGCTAGGCTACTGGTTGCTGGCGGACCGCCCACGGCTCGACGGACTTTC
GCACCGCCGCTCCTTCTACCTGCCCAAGGTGTGACGGGCGAAGAGGGGGT
TGCGGAGAAAGCGAAACCATTTAGAGCGGTAGAGCGTCCTTTCCCTTCTG
CACGAAAGTTTGGGGTGCTTCCTTGTCCTTTCTGACAGATATCTGGTTTG
GTCGTCTCAAAGGCGCATTATGAAGAGCAGGCGAAGGCTACTCGGAGATT
TTTGTCGCATCTTTCTTGCCGTATGCGGTTGCTTAACCCGCGTTTGGCTA
CCTCCATTTCTCCTTGTTGGCTACCCCATTTCTTCCTTGCACGCGACACC
GCTCTCCTCCCTCCGCACACGGTGATTGTGTGCTGCATTTGCTTTCCCCT
TGTGTTGACGCGTGTGCGAAACGCGAAACGTGAAACCTGCGACACGGCGG
TTTCAGGTTGGCGTTACGCTGGCGGCGTGGTGCACACGTGTGGCGTCCAT
CATGCTCTGCTACCCCTTTATCTGGGGCAGGCCCCACAGGTGTGTTAACC
GCGTCCGGTTCATGTCCGTTTCCGGCCACATTCCGTTCGACAGGCAGCTT
TCCTCGTATGTACCCACTGCCGCATTGCTATTTTGGACGTTCCTAGGATA
TGACCAATTTCAGGAGAAGGAATTCAGATCGCAGGATCGTGTCGTGTGTC
CGTATGTCCTTTCCTGTGACACTTTGACCCGTTCCGCGCTTGCCGCCGCC
CCCACCGCTGCAACCTGGTTGCTAACACCGCTCCTTGCTACATTTTTTCC
TTATGTATTGCCTCCATCACCTTTACTCCCGCCGCTGCCGTCTGCCGCGG
TCCGCCGCCGCTGCCTCCGCCGTCGTCGCCGCCGCTGCCTCCGCCGTCGT
CCCCGCCGCCCCCCCTCCAAATTGCCGTCTGCAGGCAGTTACTGGCGCCG
CAGTCGTGGACCTACGGCCGGCAGGTTGCCCTCGTGGTGTTCGCGGCGCT
CGACCAGGCCATCAGCCTCTTCGTGGTGGGCTGCATCCTCTTCTGCACCT
ACAGGTAGGTCGTTTCTGGTCAGGTTGCCTCGAGTCCTTTCTGGTCCTCT
CTCTTTCCTTACAGCTGATTACGTTGTTTCTCCCCTTCTAGTTCCGTTTT
CCTGTGTTCCTTGCCTCTTTTGAGTGGGAAACACGCCGGAAGCAGAGCTC
CCTGCCAACGTCCACCGCCGACTGCAGCGACGCAACGTATCCATAACTTC
GCGACGCGATCGACCTCACTCCACAATCTGTTGCCCAAATCGCCCTGCCG
CCAGCCTGGGCGTAACGTTTTTCCTACCGACTTCTTACTCTCCCGACGGC
TCCCCCCGCTGCGATACAACTCCAAAACCCGCGACCGTACATGCCGCACC
GCCGAACCCGCAAATACACAACCGAAAACTGACTTATCAGGTCCCGGCAG
ATCCTGAGGCGGCTGCCGTACCTCCGCTACCGACGGGTGCAGCTGGCCTT
CCGCCTCTACGCGTGGCTGTCGGTGATCGGGTGGGTCGTGATGGCCGCCG
TCACGGTCGCTGGCGTCGTTCAGTCGGCCGTCTTCCACCGACGCGGCGGC
GGCGGGTCGAGCACGGTGCAGGTGCATGTAGCCGACTTCTGCTGGGAGTA
GCTAGATCGGTAGACTCTTGATCAGGCTTTGGCGGTGCCGTCTCTGCCCT
CTTTAGGTTCCTGTTTGCGTGTTGTTTTGGCGAACCGTTTTAGCTGTAGG
CGTAATGCGGAGATTTCTTTCATGGCATCGGTAGTAATGCAGAGCGAAAG
CGGCGATGCGGCTGCGAGCAATTCGATCCGTGGCCCCCCAAAATCTCCGA
AATTAAACCGGAACGCGGTGCCTGTGCAGATCATGGCGTCTTCACAATAC
GCTGAGCGGATCGGCGCAAGCATGGACGACATTTCTGTGCTGTACAACAC
GTGAGGCCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig796:568..5228-

>mRNA_P-wetherbeei_contig796.1.1 ID=mRNA_P-wetherbeei_contig796.1.1|Name=mRNA_P-wetherbeei_contig796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1737bp|location=Sequence derived from alignment at P-wetherbeei_contig796:568..5228- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTGCCGAGCCATGGCGAGAACATGTGCGGGCGCCGGCCGCCATGGC
GAGCCCGCCGACCATCGCGCTGGAGGTATTTGACCGCTGCTCGCTCTCCT
GCCTTCTCTGCTGCCAGTACTTCATCGTGCTGCTGGTCTTTCTGTCGACC
TACACACTGTTTGTCAACATCAACGACGGCGAGATCTTGCTGCTCCCGTG
CGAGGACGCCTTCACCTCTGCGGGAACAACGTACACCAGCGCCAGCGCCG
GGGACGCCAGCGCCGAAATCACAATGTCTGTGTACAACTGGCTCAACGAA
TGGTCGGACTGCTACGCCATGGAACCCATCTATTTGAGCAACAGCTTCTC
GCTGGTGGTCGGCGACGACAAGGTAGACAACAAGGGCGCCGCTTTTCTGA
CGGCGCGCGGCTGCTACTACTCGCCGCCGCCGGGCACTACCGAGTACGGC
TCTTTCGAGAGTCTTGTGTTGGTCGAGAGCTGCCAGCTCGTCTACACAAC
GGCGATTGACTCGGTAGCCCTTGGGCTCTCCGTTCGCAATAGTTCATTTC
CCCGCCTCCGCCGCGCCAGCTCTGCCACCACCGACGAAATCGACGGCCAA
TTCTTGACGGACGAAACCGGCAGCGGAACCGCGGGAACCGATTTTGAAAG
CGACGGCGAAACGGCGGAGATTCCGTACGAGATTTGGGCGGAGGGGTGCT
CGACGGAGAGCTGCAGCGCGGAGCGGGCACTGCCCGTGGTGAACGACGGC
CTGCAGATGCTGTCGGACGCCGTCGACGAGGATTTTCAGGTGGACGAAGA
GAGCGGCGCGGTGACCAACGTCACCGCGAGCATCAACGTATTTCTGTACA
GCAACCTCCACAACATGATGCGGCACGCCAAGTACGCCCTGGTTCTGCCG
CCGGGCTCCGGACTCCTGGACGGAACCGTCGAGGAAGCTTCCATCTCGCT
GGCGTTCCGGACGCGGCCGGCGCTGGCGCTGCTTTGCTGGCTGTCGCTGA
TCCTGCTTGGAATATTGGGTGCATCGTGGGCGGCGAGGCTGTGGCGGCTC
ACCCACGGCAAAACCGGCAGGCCGTGGATCGTGGAGTGGAAGTGGCTGAG
CGGTGTGCTCGCGGCGGCCGTGCTGCTGGCCAATCCGCTTGGCCTCGTGC
TCGCGGCGCAGCCCGTCTCGGTCGGGAACGAGGACCGCCGCTTCTATTCT
CTCTTCGCGGCCGACACCATGAACGCCACGGGCACGGTGCTGGTATGGCT
AGGCTACTGGTTGCTGGCGGACCGCCCACGGCTCGACGGACTTTCGCACC
GCCGCTCCTTCTACCTGCCCAAGGTTGGCGTTACGCTGGCGGCGTGGTGC
ACACGTGTGGCGTCCATCATGCTCTGCTACCCCTTTATCTGGGGCAGGCC
CCACAGGCAGTTACTGGCGCCGCAGTCGTGGACCTACGGCCGGCAGGTTG
CCCTCGTGGTGTTCGCGGCGCTCGACCAGGCCATCAGCCTCTTCGTGGTG
GGCTGCATCCTCTTCTGCACCTACAGGTCCCGGCAGATCCTGAGGCGGCT
GCCGTACCTCCGCTACCGACGGGTGCAGCTGGCCTTCCGCCTCTACGCGT
GGCTGTCGGTGATCGGGTGGGTCGTGATGGCCGCCGTCACGGTCGCTGGC
GTCGTTCAGTCGGCCGTCTTCCACCGACGCGGCGGCGGCGGGTCGAGCAC
GGTGCAGGTGCATGTAGCCGACTTCTGCTGGGAGTAG
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