mRNA_P-wetherbeei_contig7954.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7954.1.1
Unique NamemRNA_P-wetherbeei_contig7954.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Match: A0A272EN61_9RHOO (Putative lipopolysaccharide heptosyltransferase III n=2 Tax=Candidatus Dactylopiibacterium carminicum TaxID=857335 RepID=A0A272EN61_9RHOO)

HSP 1 Score: 156 bits (395), Expect = 4.570e-44
Identity = 80/127 (62.99%), Postives = 93/127 (73.23%), Query Frame = 1
Query:    1 VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVCVDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQACRPCGNDGCGGGKVSECLTTLGVDRVYAAAERLL 381
            VV  AAPD  E A VA ILE A  PVLNLAG+ S++EL AL  RA+L V VDS PMH+A AVGTP VALFGPSGD EWGP   R  ++    +CRPCG DGCGGGK+SECLT +GV++V AA +R L
Sbjct:  238 VVITAAPDAREQAMVAAILEEAGVPVLNLAGRFSLRELAALTARARLFVGVDSAPMHIAAAVGTPCVALFGPSGDREWGPWMVRHEILTSTHSCRPCGQDGCGGGKLSECLTAIGVEQVLAAIDRTL 364          
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Match: A0A0S8B064_9PROT (Heptosyltransferase n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B064_9PROT)

HSP 1 Score: 152 bits (385), Expect = 1.440e-42
Identity = 80/130 (61.54%), Postives = 95/130 (73.08%), Query Frame = 1
Query:    1 VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVCVDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQACRPCGNDGCGGGKVSECLTTLGVDRVYAAAERLLVSG 390
            +V  AAPD  E+  V +I+   +AP +NLAG+LS+KEL AL  RA+L + VDSMPMH+A A+G PVVALFGPSG+ EWGP      VV+    CRPCGNDGCGGGKVSECLTTL V+ V AAA RLL  G
Sbjct:  231 IVFTAAPDREETQLVEDIVARMQAPSVNLAGQLSLKELGALAARARLFIGVDSMPMHLAAAMGVPVVALFGPSGEREWGPWSVAHEVVSSAHPCRPCGNDGCGGGKVSECLTTLEVEPVLAAARRLLEKG 360          
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Match: A0A1F4EX55_9PROT (Putative lipopolysaccharide heptosyltransferase III n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4EX55_9PROT)

HSP 1 Score: 152 bits (383), Expect = 2.730e-42
Identity = 82/127 (64.57%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVCVDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQACRPCGNDGCGGGKVSECLTTLGVDRVYAAAERLL 381
            V   AAPD  E A V EIL  ARA   NLAG+LSIKEL AL  RA+L V VDSMPMH+A A+GTP VALFGPSG++EWGP      VV    +CRPCG DGCGGGKVSECLTTL V+ V+AA   LL
Sbjct:  231 VALTAAPDPGELALVDEILRRARARPANLAGRLSIKELGALTARARLFVGVDSMPMHLAAAMGTPTVALFGPSGELEWGPWNVAHRVVTSAHSCRPCGLDGCGGGKVSECLTTLAVEPVHAAVRELL 357          
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Match: A0A521Z4C4_9PROT (Putative lipopolysaccharide heptosyltransferase III n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521Z4C4_9PROT)

HSP 1 Score: 150 bits (378), Expect = 1.020e-41
Identity = 83/127 (65.35%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVCVDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQACRPCGNDGCGGGKVSECLTTLGVDRVYAAAERLL 381
            VV  AAPD AE + V EIL++ +A  +NLAG+LSIKEL AL  RA L V VDSMPMH+A A+GTP VALFGPSG+ EWGP G    VV  D +CRPCG DGCGGGKVSECLT L VD V+AA   LL
Sbjct:  220 VVITAAPDPAEMSFVNEILKNTKA--VNLAGQLSIKELGALTARAVLFVGVDSMPMHLAGAMGTPTVALFGPSGEDEWGPWGVPHRVVRSDHSCRPCGLDGCGGGKVSECLTFLAVDAVHAAVRALL 344          
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Match: UPI0019C8428E (Putative lipopolysaccharide heptosyltransferase III n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019C8428E)

HSP 1 Score: 145 bits (365), Expect = 6.190e-41
Identity = 79/128 (61.72%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    1 VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVCVDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQACRPCGNDGCGGGKVSECLTTLGVDRVYAAAERLLV 384
            VV  ++ D  E A V  I+  AR+  L LAGKL IKEL AL  RA+L + VDSMPMH+A A+GTP VALFGPSG+ EW P   R  VV     CRPCGNDGCGGGKVSECLT L VD+V+ AAE+LLV
Sbjct:  108 VVLTSSSDPEEMALVDRIVARARSKPLILAGKLQIKELGALTARARLFIGVDSMPMHLAAAMGTPAVALFGPSGEDEWRPWQVRHRVVTSRHPCRPCGNDGCGGGKVSECLTILSVDQVHEAAEQLLV 235          
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Match: A0A1F4F3K6_9PROT (Putative lipopolysaccharide heptosyltransferase III n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F3K6_9PROT)

HSP 1 Score: 147 bits (371), Expect = 1.120e-40
Identity = 83/127 (65.35%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVCVDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQACRPCGNDGCGGGKVSECLTTLGVDRVYAAAERLL 381
            VV  AAPD  E A V EIL+  +A  +NLAG+LSIKEL AL  RA L V VDSMPMH+A A+GTP VALFGPSG+ EWGP      VV  D +CRPCG DGCGGGKVSECLT L VD VYAA   LL
Sbjct:  220 VVITAAPDPEEIAFVNEILKKTKA--VNLAGQLSIKELGALSARAALFVGVDSMPMHLAGAMGTPTVALFGPSGEHEWGPWSVPHRVVRSDHSCRPCGLDGCGGGKVSECLTFLPVDAVYAAVRELL 344          
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Match: A0A497XKC5_9PROT (Heptosyltransferase-3 n=1 Tax=Sulfurisoma sediminicola TaxID=1381557 RepID=A0A497XKC5_9PROT)

HSP 1 Score: 146 bits (369), Expect = 2.820e-40
Identity = 75/127 (59.06%), Postives = 92/127 (72.44%), Query Frame = 1
Query:    1 VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVCVDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQACRPCGNDGCGGGKVSECLTTLGVDRVYAAAERLL 381
            +V  AAPD  E A +A +L  A+   L+L+G+LS++EL AL  +A+L V VDS PMH+A A+GTP VALFGPSGD EWGP      VV  D +CRPCG DGCGGGKVSECLTTL V++V AA + LL
Sbjct:  229 IVLTAAPDEKEKALIAAVLAAAKTAPLDLSGQLSLRELAALTAQARLFVGVDSAPMHIAAAMGTPTVALFGPSGDKEWGPWNVAHRVVTADFSCRPCGLDGCGGGKVSECLTTLPVEKVLAACDELL 355          
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Match: A0A2N4XV74_9RHOO (Putative lipopolysaccharide heptosyltransferase III n=2 Tax=Uliginosibacterium TaxID=392735 RepID=A0A2N4XV74_9RHOO)

HSP 1 Score: 144 bits (364), Expect = 1.880e-39
Identity = 71/126 (56.35%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    1 VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVCVDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQACRPCGNDGCGGGKVSECLTTLGVDRVYAAAERL 378
            +V  AAPD  E   V EI+  A+ PV+NLAG+ S++EL AL  RA+L + VDS PMH+A AVGTP VALFGPSGD EWGP    + +V+   +CRPCG DGCGGGK+SECL  +GV +V  A +R+
Sbjct:  239 IVITAAPDPREQQMVEEIIAAAKVPVVNLAGQFSLRELAALTARARLFIGVDSAPMHIAAAVGTPCVALFGPSGDKEWGPWMVASEIVSSQHSCRPCGQDGCGGGKLSECLYAIGVQQVLDAIDRV 364          
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Match: A0A431MD40_9RHOO (Putative lipopolysaccharide heptosyltransferase III n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A431MD40_9RHOO)

HSP 1 Score: 144 bits (363), Expect = 2.240e-39
Identity = 74/128 (57.81%), Postives = 90/128 (70.31%), Query Frame = 1
Query:    1 VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVCVDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQACRPCGNDGCGGGKVSECLTTLGVDRVYAAAERLLV 384
            +V   AP+  E A +A+I     APV++L+G+LS+KEL AL  RAKL + VDS PMH+A A+GTPVV LFGPSGD EWGP   R  VV  +  CRPCG DGCGG KVS+CLTTL V+RV  A   LL+
Sbjct:  230 LVLTGAPEANEMAMMAQIKSRIHAPVVDLSGQLSLKELAALTRRAKLFIGVDSAPMHIAAAMGTPVVVLFGPSGDKEWGPWMTRHRVVTTNHTCRPCGRDGCGGSKVSDCLTTLPVERVVVACHELLM 357          
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Match: A0A1F4ARI8_9PROT (Putative lipopolysaccharide heptosyltransferase III n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4ARI8_9PROT)

HSP 1 Score: 144 bits (362), Expect = 3.360e-39
Identity = 77/128 (60.16%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    1 VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVCVDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQ-ACRPCGNDGCGGGKVSECLTTLGVDRVYAAAERLL 381
            VV  AAP+  E A VA I      P ++ +GKLS+K L AL GRAKL V VDS PMH+A A+GTPVVALFGPSG+ EWGP     LVVA  + ACRPCGNDGCGGGKVSECL ++ V+ V+ A + LL
Sbjct:  232 VVLTAAPEERELAFVAAIRSRCATPPVDFSGKLSLKMLAALAGRAKLFVGVDSAPMHIAAAMGTPVVALFGPSGETEWGPWKVPHLVVASSRHACRPCGNDGCGGGKVSECLASISVEAVFEAVDALL 359          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7954.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A272EN61_9RHOO4.570e-4462.99Putative lipopolysaccharide heptosyltransferase II... [more]
A0A0S8B064_9PROT1.440e-4261.54Heptosyltransferase n=1 Tax=Betaproteobacteria bac... [more]
A0A1F4EX55_9PROT2.730e-4264.57Putative lipopolysaccharide heptosyltransferase II... [more]
A0A521Z4C4_9PROT1.020e-4165.35Putative lipopolysaccharide heptosyltransferase II... [more]
UPI0019C8428E6.190e-4161.72Putative lipopolysaccharide heptosyltransferase II... [more]
A0A1F4F3K6_9PROT1.120e-4065.35Putative lipopolysaccharide heptosyltransferase II... [more]
A0A497XKC5_9PROT2.820e-4059.06Heptosyltransferase-3 n=1 Tax=Sulfurisoma sedimini... [more]
A0A2N4XV74_9RHOO1.880e-3956.35Putative lipopolysaccharide heptosyltransferase II... [more]
A0A431MD40_9RHOO2.240e-3957.81Putative lipopolysaccharide heptosyltransferase II... [more]
A0A1F4ARI8_9PROT3.360e-3960.16Putative lipopolysaccharide heptosyltransferase II... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7954contigP-wetherbeei_contig7954:3..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog640081.Dsui_0469
PFAMsGlyco_transf_9
Model size393
Max annot lvl206389|Rhodocyclales
KEGG koko:K02849
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00080
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.33e-38
EggNOG OGsCOG0859@1|root,COG0859@2|Bacteria,1MYZA@1224|Proteobacteria,2VRSM@28216|Betaproteobacteria,2KVQV@206389|Rhodocyclales
DescriptionGlycosyltransferase family 9 (heptosyltransferase)
Cds size393
COG categoryM
CAZyGT9
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko01005
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187011.4714534-CDS-P-wetherbeei_contig7954:2..3951683187011.4714534-CDS-P-wetherbeei_contig7954:2..395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7954 3..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7954.1.1prot_P-wetherbeei_contig7954.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7954 3..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7954.1.1

>prot_P-wetherbeei_contig7954.1.1 ID=prot_P-wetherbeei_contig7954.1.1|Name=mRNA_P-wetherbeei_contig7954.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
VVSKAAPDTAESARVAEILEHARAPVLNLAGKLSIKELVALIGRAKLSVC
VDSMPMHVANAVGTPVVALFGPSGDVEWGPRGARALVVAGDQACRPCGND
GCGGGKVSECLTTLGVDRVYAAAERLLVSG*
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mRNA from alignment at P-wetherbeei_contig7954:3..395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7954.1.1 ID=mRNA_P-wetherbeei_contig7954.1.1|Name=mRNA_P-wetherbeei_contig7954.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig7954:3..395+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCAGCAAGGCGGCGCCGGATACCGCAGAGTCAGCCCGCGTGGCGGA AATCCTCGAGCACGCCCGCGCACCGGTACTGAACCTAGCGGGAAAGCTTT CCATCAAGGAACTGGTGGCTCTGATCGGGCGGGCGAAGTTGTCGGTCTGC GTGGACTCCATGCCCATGCATGTCGCGAATGCCGTGGGAACGCCGGTCGT GGCGCTGTTCGGCCCCAGTGGGGATGTCGAATGGGGGCCGCGCGGCGCGC GTGCCCTGGTCGTCGCCGGCGACCAGGCGTGCCGCCCCTGCGGCAACGAC GGATGCGGCGGCGGGAAAGTGAGCGAATGCTTGACGACCCTGGGCGTGGA CCGCGTCTACGCCGCCGCGGAGCGGCTGCTCGTTTCCGGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7954:3..395+

>mRNA_P-wetherbeei_contig7954.1.1 ID=mRNA_P-wetherbeei_contig7954.1.1|Name=mRNA_P-wetherbeei_contig7954.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig7954:3..395+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGTCAGCAAGGCGGCGCCGGATACCGCAGAGTCAGCCCGCGTGGCGGA
AATCCTCGAGCACGCCCGCGCACCGGTACTGAACCTAGCGGGAAAGCTTT
CCATCAAGGAACTGGTGGCTCTGATCGGGCGGGCGAAGTTGTCGGTCTGC
GTGGACTCCATGCCCATGCATGTCGCGAATGCCGTGGGAACGCCGGTCGT
GGCGCTGTTCGGCCCCAGTGGGGATGTCGAATGGGGGCCGCGCGGCGCGC
GTGCCCTGGTCGTCGCCGGCGACCAGGCGTGCCGCCCCTGCGGCAACGAC
GGATGCGGCGGCGGGAAAGTGAGCGAATGCTTGACGACCCTGGGCGTGGA
CCGCGTCTACGCCGCCGCGGAGCGGCTGCTCGTTTCCGGCTAG
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