mRNA_P-wetherbeei_contig12921.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12921.2.1
Unique NamemRNA_P-wetherbeei_contig12921.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12921.2.1 vs. uniprot
Match: Q6XLZ4_9PHYC (FirrV-1-B42 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLZ4_9PHYC)

HSP 1 Score: 60.8 bits (146), Expect = 5.220e-9
Identity = 43/148 (29.05%), Postives = 71/148 (47.97%), Query Frame = 1 
Query:   19 LYVNLQRCQHSNDLL-----FAVTHQYKLHVNVVDVSREIPPSWLPGTPTFVHGRSVFCGDGAFAFAQSFADSVAQSNGVQKSIAAVIAEGGVPTSQKRVGGKKASRGAVGTSITDAFKPVTEQDENAITERYAESTDARLQRLMSSR 447
            +Y + +RC++S +++       V H+    V  +D+ +  PP+WLPGTP+ V G  V+CGD AF + ++          +Q+S AA      + T Q  V  K       G  ++ AF PV     +    R   ST+  + RL++ R
Sbjct:    6 IYTHCKRCKYSREIMTLSAELGVEHR----VQFIDLDKNPPPTWLPGTPSLVCGNDVYCGDAAFKYVEN----------MQRSTAAAEPSKAM-TGQPSVASK-------GLGLSQAFAPVPSAVSDDDESRPMISTNDMMNRLLAER 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12921.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q6XLZ4_9PHYC5.220e-929.05FirrV-1-B42 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12921contigP-wetherbeei_contig12921:395..844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size450
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-63
Ec32 orthologEc-06_006160.1
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.6657984-CDS-P-wetherbeei_contig12921:394..8441683185966.6657984-CDS-P-wetherbeei_contig12921:394..844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12921 395..844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12921.2.1prot_P-wetherbeei_contig12921.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12921 395..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12921.2.1

>prot_P-wetherbeei_contig12921.2.1 ID=prot_P-wetherbeei_contig12921.2.1|Name=mRNA_P-wetherbeei_contig12921.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
PEDVPTLYVNLQRCQHSNDLLFAVTHQYKLHVNVVDVSREIPPSWLPGTP
TFVHGRSVFCGDGAFAFAQSFADSVAQSNGVQKSIAAVIAEGGVPTSQKR
VGGKKASRGAVGTSITDAFKPVTEQDENAITERYAESTDARLQRLMSSR*
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mRNA from alignment at P-wetherbeei_contig12921:395..844-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12921.2.1 ID=mRNA_P-wetherbeei_contig12921.2.1|Name=mRNA_P-wetherbeei_contig12921.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig12921:395..844- (Phaeothamnion wetherbeei SAG_119_79)
CCCGAAGACGTACCAACCTTGTACGTAAACCTTCAACGGTGTCAGCACTC
CAATGACCTATTATTTGCAGTCACTCATCAGTACAAGTTACATGTGAATG
TGGTTGACGTTTCCAGGGAAATTCCTCCATCGTGGCTTCCAGGAACACCA
ACTTTTGTTCATGGGAGGAGCGTATTCTGCGGCGACGGAGCATTTGCTTT
TGCTCAATCGTTTGCGGATTCGGTTGCGCAGTCAAATGGCGTCCAAAAAT
CAATTGCAGCGGTGATAGCGGAGGGTGGTGTGCCGACGTCACAAAAAAGA
GTGGGAGGTAAAAAAGCAAGCAGAGGTGCGGTGGGGACGTCCATCACAGA
CGCATTTAAGCCCGTGACAGAGCAGGACGAGAATGCAATTACAGAGAGAT
ATGCAGAGTCGACGGATGCAAGGCTCCAACGACTCATGAGTTCACGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12921:395..844-

>mRNA_P-wetherbeei_contig12921.2.1 ID=mRNA_P-wetherbeei_contig12921.2.1|Name=mRNA_P-wetherbeei_contig12921.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig12921:395..844- (Phaeothamnion wetherbeei SAG_119_79)
CCCGAAGACGTACCAACCTTGTACGTAAACCTTCAACGGTGTCAGCACTC
CAATGACCTATTATTTGCAGTCACTCATCAGTACAAGTTACATGTGAATG
TGGTTGACGTTTCCAGGGAAATTCCTCCATCGTGGCTTCCAGGAACACCA
ACTTTTGTTCATGGGAGGAGCGTATTCTGCGGCGACGGAGCATTTGCTTT
TGCTCAATCGTTTGCGGATTCGGTTGCGCAGTCAAATGGCGTCCAAAAAT
CAATTGCAGCGGTGATAGCGGAGGGTGGTGTGCCGACGTCACAAAAAAGA
GTGGGAGGTAAAAAAGCAAGCAGAGGTGCGGTGGGGACGTCCATCACAGA
CGCATTTAAGCCCGTGACAGAGCAGGACGAGAATGCAATTACAGAGAGAT
ATGCAGAGTCGACGGATGCAAGGCTCCAACGACTCATGAGTTCACGTTAA
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