mRNA_P-wetherbeei_contig7945.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7945.1.1
Unique NamemRNA_P-wetherbeei_contig7945.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7945.1.1 vs. uniprot
Match: A0A7S3USE9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE9_HETAK)

HSP 1 Score: 136 bits (342), Expect = 4.790e-35
Identity = 80/198 (40.40%), Postives = 118/198 (59.60%), Query Frame = 1
Query:   64 RAQRSAAATASICRRAEAAVAALASKDRFWRAIDYRLEAHVEAAVEACCKVEAVSERGGAALAWTPEVVAEVAGNLQRVAKLVAAKADHTVLARLTAAHDPTAADVDWDAKVMSLRESFSRQFATDCRRCVDKRYPPQSAAIHDTRDRFFVRVERALRVAASKHAKIEVGKTLFGKLRLD-PACIACNRPFGPQPGPG 654
            R +RS+   A++CR+AE  V A+ASK  FW A+  RL+AH++   + CC++EA S    A  + +PE    +AGN QRVAKLV  +AD   + +++ +  P   D DWD KV  LR+ +  +F         K++      + DTR RF  ++++A+R+A SK  K++ G TLFGK     PAC+AC+RPF   PGPG
Sbjct:   37 RTERSSVGLAALCRQAEGQVRAIASKSLFWEALQARLQAHLKGFGDRCCELEANSSAAHA-FSLSPEAQRYLAGNAQRVAKLVGQRADFETIRQVSTSRHPE--DEDWDTKVDQLRQKYRAEFTQGVEAYAAKQHRSGDTVVLDTRRRFLAKLDQAVRLALSKFNKVQPGLTLFGKRSAQVPACMACDRPFTSDPGPG 231          
BLAST of mRNA_P-wetherbeei_contig7945.1.1 vs. uniprot
Match: A0A836CLL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 6.650e-33
Identity = 95/224 (42.41%), Postives = 121/224 (54.02%), Query Frame = 1
Query:   25 LRHQQEEWADAVRRAQRSAAATASICRRAEAAVAALASKDRFWRAIDYRLEAHVEAAVEACCKVEAVSER--------------------GGAALAWTPEVVAEVAGNLQRVAKLVAAKADHTVLARLTAAHDPTAADVDWDAKVMSLRESFSRQFATDCRRCVDKRYPPQSAAIHDTRDRFFVRVERALRVAASKHAKIEVGKTLFGKLRL-DPACIACNRPF 633
            LR    E ADA+   QRS  A A   RR E A  +LASK  FW + D +L AHVE       +VEA +                      G   LA  P+ +  +AGN QRVAKL+AAKAD+ V+  ++ A DP A   DWDA+V +LR +F  QF+ D R  + KR P Q  A    R RF  RV+ ALRVA SK+     G TLFG++R+   AC+AC+RPF
Sbjct:  699 LRAHAAEGADALEALQRSGVANALALRRVETAFQSLASKGLFWESTDIKLAAHVEEVARVSLQVEAAAXXXXXXXXXXXXXXXXXXSAPPGAPHLA--PDALRVLAGNTQRVAKLIAAKADYEVIRLVSRAEDPGAEGHDWDARVETLRGAFLAQFSADARNVLRKRAPHQGPAAEAARGRFLARVDGALRVALSKYRPTTPGATLFGRVRVVAQACVACDRPF 920          
BLAST of mRNA_P-wetherbeei_contig7945.1.1 vs. uniprot
Match: D8LLI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI9_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 4.420e-27
Identity = 78/202 (38.61%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 SMAVVAAALRHQQEEWADAVRRAQRSAAATASICRRAEAAVAALASKDRFWRAIDYRLEAHVEAAVEACCKVEAVSERGGAALAWTPEVVAEVAGNLQRVAKLVAAKADHTVLARLTAAHDPTAADVDWDAKVMSLRESFSRQFATDCRRCVDKRYPPQSAAIH--DTRDRFFVRVERALRVAASKHAKIEVGKTLFGKLRL 600
            S+A +  ALR Q E+ A  V   QRS+    ++ R+ EA V AL++KD FW+A+D +L AH  A  E C  VE  +    + +  + E  A +AG++QRVAKL+A KAD+ V+  L     P     DWD +V  LR++  R+F  DCR  +DK  P      +  + R +F  ++  AL+VA SK++    G TLFGK++L
Sbjct:  662 SLAHLGTALRRQGEDAAQMVSTLQRSSVGIVTVLRKMEAGVHALSTKDLFWKAVDVKLAAHQRAVGEVCLDVEDATVSRRSRITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLDTPEQTGQDWDERVEFLRQTQMRRFLKDCRDALDKTAPEVRTNFNGEEIRGKFMGKLSDALKVALSKYSPTTPGATLFGKIKL 863          
BLAST of mRNA_P-wetherbeei_contig7945.1.1 vs. uniprot
Match: D8LS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS35_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.290e-24
Identity = 70/181 (38.67%), Postives = 107/181 (59.12%), Query Frame = 1
Query:    7 AVVAAALRHQQEEWADAVRRAQRSAAATASICRRAEAAVAALASKDRFWRAIDYRLEAHVEAAVEACCKVEAVSERGGAALAWTPEVVAEVAGNLQRVAKLVAAKADHTVLARLTAAHDPTAADVDWDAKVMSLRESFSRQFATDCRRCVDKRYPPQSAAIHDTRDRFFVRVERALRVAAS 549
            A VA A+R QQ+   ++ RR +R+  +   + ++ E ++  L+S+D FW  +  +L+AH EA  +A C+VEA SE        T E+   +AGN QRVAKL+  KAD  V+ +LTA+ +      DWD +V S+R SF   F  + RR +D++YP         RDRFFV++E+ L+V +S
Sbjct:  543 AKVATAVREQQQRREESSRRVERANLSLTLLVKKLERSLFVLSSRDLFWEEVGTKLKAHAEAFADASCRVEATSEEQDR-FVLTVELQQYIAGNTQRVAKLICQKADFEVIQKLTASTNIEKGAQDWDRRVQSMRGSFLEHFVANARRYLDRKYPSHGPFGARNRDRFFVKLEQGLKVNSS 722          
BLAST of mRNA_P-wetherbeei_contig7945.1.1 vs. uniprot
Match: D7G4P4_ECTSI (Myosin-like antigen n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P4_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 4.110e-20
Identity = 67/214 (31.31%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   31 HQQEEWADAVRRAQRSAAATASICRRAEAAVAALASKDRFWRAIDYRLEAHVEAAVEACCKVEAVSERGGAALAWTPEVVAEVAGNLQRVAKLVAAKADHTVLARLTAAHDPTAADVDWDAKVMSLRESFSRQFATDCRRCVDKRYPPQSAAIHDTRDRFFVRVERALRVAASKHAKIEVGKTLFGKLRLDPACIACNRPFGPQPGPGDPRSAL 672
            H + E  D +   +RS  +  +  RR + ++ ALA+K+  W  ++ + + HV+        +E  +       +  P +   V+   Q VAK+VA +AD+ V  +     +P   D DWD KV  LR  F  +F +D  +   K  P     + + R+ F  ++E ++++A SK+  I+ G T+ GK+ L P+C+AC+RPF   PGPGDPRS +
Sbjct:  142 HFKAENGDRMTSLERSNVSVVTTMRRLQRSLDALATKEGRWDRLEVQTKRHVQVLGGHLADLEGAATCAEP-FSLGPAMQKHVSAVSQMVAKIVATRADYEVTRQAVNRKNP-GEDSDWDRKVEELRIRFMNKFVSDVVQVASKLRPLPDRPVEEVRETFATKLELSMKLAISKYKPIQAGATILGKVHLLPSCMACDRPFIDNPGPGDPRSVV 353          
BLAST of mRNA_P-wetherbeei_contig7945.1.1 vs. uniprot
Match: A0A7S3JPN6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPN6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.770e-11
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  412 ESFSRQFATDCRRCVDKRYPPQSAAIHDTRDRFFVRVERALRVAASKHAKIEVGKTLFGKLRLDPACIACNRPFGP 639
            ES   +F    R+  +K +P     +  TRD F  R++  L+V  SKH KI+   TLFGKLRL P C+AC+RPF P
Sbjct:    1 ESAISKFIVGVRQAANKLHPTTDTKVQSTRDLFLSRLDLGLKVGISKHQKIQPNYTLFGKLRLKPTCVACDRPFAP 76          
BLAST of mRNA_P-wetherbeei_contig7945.1.1 vs. uniprot
Match: A0A8J2S9U3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9U3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.170e-10
Identity = 58/201 (28.86%), Postives = 90/201 (44.78%), Query Frame = 1
Query:   37 QEEWADAVRRAQRSAAATASICRRAEAAVAALASKDRFWRAIDYRLEAHVEAAVEACCKVEA--VSERGGAALAWTPEVVAEVAGNLQRVAKLVAAKADHTVLARLTAAHDPTAADVDWDAKVMSLRESFSRQFATDCRRCVDKRYPPQSAAIHDTRDRFFVRVERALRVAASKHAKIEVGKTLFGKLRLDPACIACNRPF 633
            + ++ DA+ R  RS  A A   ++ +    +   KD     +D  L+ HV    + C + E+  +SER    ++        +A  +Q  ++ +A +AD   L  L    +P      WD ++   R    R F         K +P        TR RF  R++  LRV  SKH  +    TLFGK +L PAC+AC+RPF
Sbjct:  525 ERDYDDAMARLHRSLVAQAVAVKQIKHMAGSAVLKDMAGDRLDAILDEHVSELAKHCVEAESAVISERE---MSLPVNEQKWLAATIQHCSEALATRADLECLRGLIGHVEPPETSDLWDQQLEKNRARLLRSFCERLDEAAAKLHPTNDHMAEATRRRFNERLKLCLRVGLSKHDPVRPNMTLFGKTKLGPACVACDRPF 722          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7945.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S3USE9_HETAK4.790e-3540.40Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CLL5_9STRA6.650e-3342.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LLI9_ECTSI4.420e-2738.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LS35_ECTSI2.290e-2438.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4P4_ECTSI4.110e-2031.31Myosin-like antigen n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S3JPN6_9STRA2.770e-1144.74Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2S9U3_9STRA1.170e-1028.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7945contigP-wetherbeei_contig7945:199..1880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size879
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_002000.1
Cds size876
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.7537484-CDS-P-wetherbeei_contig7945:198..2531683187010.7537484-CDS-P-wetherbeei_contig7945:198..253Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7945 199..253 -
1683187010.7649918-CDS-P-wetherbeei_contig7945:433..8611683187010.7649918-CDS-P-wetherbeei_contig7945:433..861Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7945 434..861 -
1683187010.7748168-CDS-P-wetherbeei_contig7945:1225..14081683187010.7748168-CDS-P-wetherbeei_contig7945:1225..1408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7945 1226..1408 -
1683187010.7849417-CDS-P-wetherbeei_contig7945:1667..18771683187010.7849417-CDS-P-wetherbeei_contig7945:1667..1877Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7945 1668..1877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.7972286-UTR-P-wetherbeei_contig7945:1877..18801683187010.7972286-UTR-P-wetherbeei_contig7945:1877..1880Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7945 1878..1880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7945.1.1prot_P-wetherbeei_contig7945.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7945 199..1877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7945.1.1

>prot_P-wetherbeei_contig7945.1.1 ID=prot_P-wetherbeei_contig7945.1.1|Name=mRNA_P-wetherbeei_contig7945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=292bp
MAVVAAALRHQQEEWADAVRRAQRSAAATASICRRAEAAVAALASKDRFW
RAIDYRLEAHVEAAVEACCKVEAVSERGGAALAWTPEVVAEVAGNLQRVA
KLVAAKADHTVLARLTAAHDPTAADVDWDAKVMSLRESFSRQFATDCRRC
VDKRYPPQSAAIHDTRDRFFVRVERALRVAASKHAKIEVGKTLFGKLRLD
PACIACNRPFGPQPGPGDPRSALPEGPPLPRKGGRSAAVAVGSDGGNGGS
AFVPPGMGNVGGGGGCGRSGGRTHGRNTQYVYRGGFKLPKSM
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mRNA from alignment at P-wetherbeei_contig7945:199..1880-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7945.1.1 ID=mRNA_P-wetherbeei_contig7945.1.1|Name=mRNA_P-wetherbeei_contig7945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1682bp|location=Sequence derived from alignment at P-wetherbeei_contig7945:199..1880- (Phaeothamnion wetherbeei SAG_119_79)
AGCATGGCCGTCGTGGCGGCGGCGCTGCGGCACCAGCAGGAGGAATGGGC GGACGCCGTGCGGCGGGCGCAGCGGAGCGCGGCAGCGACGGCGAGCATCT GCCGGCGGGCCGAGGCGGCCGTGGCGGCGCTCGCCAGCAAAGATCGCTTC TGGCGCGCCATCGATTACCGGCTGGAGGCCCACGTCGAGGCCGCCGTGGA GGCGTGCTGCAAGGTGGGGTGTTTGGGGGTTGTCTTTGCGCTGACCTTAG CTGAAGTGCCGCAGTGGAGAGAGAAGGGGTTTGGGGCTGGCTCGCCTTGT TTTGCCGATTTCGATGCGTTAAAGTCTGGTTGTTTCTGCTTCACAAAAGA ATTTGAAGTACTCTTGTTTCTTGGATTCAACCGTCAACGTCTTTTGTACC GAGCACGAGAAACCGGTGCTCCGCCTCCCTTATTTCCTTCCGTCGCCCTC GAGAAACGAACTGTACGACCAGGTGGAGGCCGTCAGTGAGCGCGGCGGCG CGGCGCTGGCGTGGACGCCGGAGGTGGTGGCTGAAGTGGCGGGTAACCTG CAGCGGGTGGCCAAGCTGGTGGCCGCCAAGGCCGATCACACCGTGCTGGC GCGGCTGACGGCGGCGCACGACCCCACAGCCGCTGACGTCGACTGGGACG CCAAGGTGCGTGTGCGCCGTCGCAGGCAGGCGGGCGGGCGGCACCTCCTT CTAAACGAAGGACTTGGGACTCAGTCAGTCGTGTTTGTCATTCACGGGTT CCGAGGCCTCGCTCGGCGGCTGTGCGGACGCCGTGTACAGCTCTAGTCGT TGCTGCCACAGAGCATCCGCTTGCTTATGTTTCTTCCCACGAGAGCCACG AGCAATTACAAAGAATCATCACGGCGTTCCGAGTCCTTTCCCTCCCCGAA GCAGCCTCAACCGAAACTGATTCAAAGTGAAGGTTCGCCCAGAGCATCCT TGAGGAACAGGCTAAACTCTATGCTTATCTCTTACCCTCCATCGTCCAAT TGCATTCTCATATGTGCAGGTGATGTCGCTACGGGAGAGTTTCTCCCGGC AGTTCGCGACCGACTGCCGCCGCTGCGTCGACAAGCGCTACCCGCCGCAG AGTGCCGCAATCCACGACACGCGCGACCGCTTCTTCGTCCGTGTGGAGCG CGCGCTGCGCGTGGCGGCGTCAAAGCACGCTAAGATCGAGGTTGGAAAGA CGTTGTTCGGCAAGCTGCGGCTGGACCCCGCCTGCATCGCCTGCAACCGC CCGTTCGGGCCGCAGCCGGGGCCGGGCGACCCGCGTTCGGCGTTGCCGGA GGGGCCGCCGCTGCCGCGAAAGGGCGGGCGGTCAGCCGCGGTAGCAGTGG GCAGCGACGGCGGAAACGGCGGTAGTGCATTTGTCCCGCCAGGGATGGGC AACGTTGGCGGCGGCGGCGGTTGCGGCAGGAGCGGAGGGCGTACACAGTC GCCGCCGCCACGGCTAACCGCCGAGCCGTACGGCGCTGCGGGCAGCAACA AAGGCGGCAGCGCCCACGGTATGATGCGCGGCCCCGAAGGCACGAGACCG CTGACGGCAGGGGCGATCCTCGGCAACGGCGGCGGCAGTGGCGGCAACGG CGGCAGTGGCAGTGGCGGCTGGACGAGCGGGCGAAACACGCAGTACGTCT ACCGCGGCGGCTTCAAGCTGCCGAAGTCGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7945:199..1880-

>mRNA_P-wetherbeei_contig7945.1.1 ID=mRNA_P-wetherbeei_contig7945.1.1|Name=mRNA_P-wetherbeei_contig7945.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=876bp|location=Sequence derived from alignment at P-wetherbeei_contig7945:199..1880- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGTCGTGGCGGCGGCGCTGCGGCACCAGCAGGAGGAATGGGCGGA
CGCCGTGCGGCGGGCGCAGCGGAGCGCGGCAGCGACGGCGAGCATCTGCC
GGCGGGCCGAGGCGGCCGTGGCGGCGCTCGCCAGCAAAGATCGCTTCTGG
CGCGCCATCGATTACCGGCTGGAGGCCCACGTCGAGGCCGCCGTGGAGGC
GTGCTGCAAGGTGGAGGCCGTCAGTGAGCGCGGCGGCGCGGCGCTGGCGT
GGACGCCGGAGGTGGTGGCTGAAGTGGCGGGTAACCTGCAGCGGGTGGCC
AAGCTGGTGGCCGCCAAGGCCGATCACACCGTGCTGGCGCGGCTGACGGC
GGCGCACGACCCCACAGCCGCTGACGTCGACTGGGACGCCAAGGTGATGT
CGCTACGGGAGAGTTTCTCCCGGCAGTTCGCGACCGACTGCCGCCGCTGC
GTCGACAAGCGCTACCCGCCGCAGAGTGCCGCAATCCACGACACGCGCGA
CCGCTTCTTCGTCCGTGTGGAGCGCGCGCTGCGCGTGGCGGCGTCAAAGC
ACGCTAAGATCGAGGTTGGAAAGACGTTGTTCGGCAAGCTGCGGCTGGAC
CCCGCCTGCATCGCCTGCAACCGCCCGTTCGGGCCGCAGCCGGGGCCGGG
CGACCCGCGTTCGGCGTTGCCGGAGGGGCCGCCGCTGCCGCGAAAGGGCG
GGCGGTCAGCCGCGGTAGCAGTGGGCAGCGACGGCGGAAACGGCGGTAGT
GCATTTGTCCCGCCAGGGATGGGCAACGTTGGCGGCGGCGGCGGTTGCGG
CAGGAGCGGAGGGCGTACACACGGGCGAAACACGCAGTACGTCTACCGCG
GCGGCTTCAAGCTGCCGAAGTCGATG
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