mRNA_P-wetherbeei_contig7940.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7940.1.1
Unique NamemRNA_P-wetherbeei_contig7940.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Match: A0A6H5JGM0_9PHAE (PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGM0_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 2.940e-69
Identity = 147/391 (37.60%), Postives = 216/391 (55.24%), Query Frame = 1
Query:   10 VRSAMEFFWNRSRAEQCQPPQPGSAHGRVPYSVLSVKGEQKAPEPPLGRTVVVDVDGATVRPGQGAIGAATAGT-----AARVASLVGERMTLKMNGRVKPHWDAVVVHSGWLLKQGGSSMQKWLWRFCVLYSTAQGHFLSYYVDIPETPLYSETGSHAERGTLDMSRIAFIRPVSA-----AKDTPPNAFDLVLLDKEWTLCADSPKAMLLWMQVLARAAESDVAVMPDDETVFRVA---LASGGEEGPGGAIYTVTGEALVKISSMGVSIQ---------QLNGI-------NSGSGMGDDGEVFYPYTDFFKWVLVDLRDGMHGLLLKCFLDDSFEARV-----------------ERLIVHAHAADIAAHIEYHIEKFMAFMHLRYE 1044
             R++ME+FWN  RAE   PP+ GS HGR   S+++++GE +AP  P GR   VD+DG  VR GQ    +A  G      + R    V ++ TL+ NG  +P W+ VVVH GWL K+GG ++++W+WR+ VLY T QGHFL+YY D+ E PLY E  +  ER  +D+ ++ F+RP        A + P NAF +V   ++WTL A+S  A+L W+++++ A + DVAV+ D E +F V    +  GG+ GP  A         V + SMG+ ++          L  +        S S    D   F+ +TDF+KW +V L+DG   L L+CF+DD F+ R                  + L+V  +A  +A  IE+ +EKFM+ MHLR E
Sbjct:  415 ARNSMEYFWNARRAELRLPPKAGSTHGRCVASMVTLRGEVQAPAVPTGRVDPVDLDGVEVRVGQVVQPSAKRGQLNLLPSPRALLGVEKKRTLRYNGGARPQWERVVVHQGWLRKRGGGAIKRWIWRYFVLYDTPQGHFLAYYNDVSEVPLYDE--ARRERQLVDLCKVCFLRPEIGRQKLPAVELPANAFTVVTTQRQWTLAAESRTAVLEWLRMISVAVDEDVAVVDDGEIMFEVKAHWVRQGGQYGPENA-------GTVHLGSMGMELRFGFSEAAATSLAALATHPKKRGSSSASYADNVRFWSFTDFYKWTIVLLQDGTRALALQCFIDDQFKEREVGEWVDFCQIVVLVMDGDMLLVTPNAKRLALAIEHQVEKFMSLMHLRLE 796          
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Match: A0A482S2P2_9ARCH (PH domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2P2_9ARCH)

HSP 1 Score: 240 bits (613), Expect = 1.790e-68
Identity = 149/361 (41.27%), Postives = 202/361 (55.96%), Query Frame = 1
Query:    1 ILQVRSAMEFFWNRSRAEQCQPP--QPGSAHGRVPYSVLSVKGEQKAPEPPLGRTVVVDVDGATVRPGQGAIGAATAGTAARVASLVGERMTLKM-NGRVKPHWDAVVVHSGWLLKQGGSSM---QKWLWRFCVLYSTAQGHFLSYYVDIPETPLYSETGSHAERGTLDMSRIAFIRPVSAAKD---TPPNAFDLVLLDKEWTLCADSPKAMLLWMQVLARAAESDVAVMPDDETVFRVALASGGEEGPGGAIYTVTGEALVKISSMGVSIQQLNGINSGSGMGDDGEVFYPYTDFFKWVLVDLRDGMHGLLLKCFLDDSFEARVERLIVHAHAADIAAHIEYHIEKFMAFMHLRYETHSG 1056
            I  V+   E+FWN     Q      + GS HGR   S  ++ GE   PEPP+G   +VD DG  VR G G +    A  AA V S   E  ++ M N  VK HW  VV+H GWLLKQGG  +   + W+ R+ VLY T+QGHFL YY D  E P+Y+   +H  R  +D+++  FIRP S   D   TPP  FD+V  ++EWTLCA+S + +  W+Q+L RA + DVA++PD+E VF+V       +      YT      +K+S+ GVS+  +   NS  G GD    F+ YTDF+KW +++  DG + LL+  F D SF  R E +     A  +A  IEY IEKFM+ MH+R ET  G
Sbjct:  215 IRDVKHTFEYFWNTYHTSQGNQSAIKLGSTHGRPIVSAHTLSGEVPPPEPPVGHVDIVDQDGLVVRAG-GKMAPRRASLAAGVVSTSKEPKSVPMENKAVKKHWHNVVMHQGWLLKQGGVGVGTNKSWIKRYFVLYKTSQGHFLVYYSDFTECPMYTAEKNH--RNIVDLAKATFIRPGSNKSDNPDTPPYCFDIVTTEREWTLCAESQENVQRWLQILTRAVDEDVAILPDEELVFKVKPKLDPLQALPATDYTTA----LKVSANGVSVT-IPDPNSKDG-GDREMYFWVYTDFYKWSIMN-PDGKYALLVNVFADSSFSRRYEYIFRTKDAQRLATAIEYFIEKFMSVMHIRLETQEG 565          
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Match: A0A7S3HC11_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HC11_9STRA)

HSP 1 Score: 221 bits (563), Expect = 4.050e-61
Identity = 140/365 (38.36%), Postives = 200/365 (54.79%), Query Frame = 1
Query:    1 ILQVRSAMEFFWNRSRAEQCQPPQP--GSAHGRVPYSVLSVKGEQKAPEPPL------GRTVVVDVDGATVRPGQGAIGAATAGTAARVASLVGERMTLKMNGRVKPHWDAVVVHSGWLLKQGG---SSMQKWLWRFCVLYSTAQGHFLSYYVDIPETPLYSETGSHAERGTLDMSRIAFIRPVSAAKD---TPPNAFDLVLLDKEWTLCADSPKAMLLWMQVLARAAESDVAVMPDDETVFRVALASGGEEGPGGAIYTVTGEALVKISSMGVSIQQLNGINSGSGMGDDGEV---FYPYTDFFKWVLVDLRDGMHGLLLKCFLDDSFEARVERLIVHAHAADIAAHIEYHIEKFMAFMHLRYE 1044
            +  V+   EFFWN+ R  + Q  Q   GS HGR   SV ++ G+     PP       G + VVD DG  VRPG G I    A     +      ++    N  VKPHW  VV+H GWLLKQGG    +++ W+ R+ VLY T+QGHFL YY D  E P+Y+   +H  R  +DM++  FIRP S  +D   TPP+ FD+V  ++EWTLCA+S      W+++L +A + DVA++PD+E VF+V      +  P G + +      +K+S+ G+S+            G D EV   F+ YTDF+KW L+  + G   LL+  F D +F  R+E +  +  A  +A  IE+ IEKFM +MH+R E
Sbjct:  302 VRDVKHTFEFFWNKYRVGRGQSDQVKLGSTHGRPIVSVSTLSGDL----PPSNEHQVQGSSEVVDQDGLIVRPG-GRIAPRRASINTGMMQTKEPKVVPPENREVKPHWHKVVLHQGWLLKQGGVGVGTIKSWIKRYFVLYKTSQGHFLVYYSDFTECPMYTAEKNH--RNFVDMAKCTFIRPGSNKQDNPDTPPHCFDIVTTEREWTLCAESQDNAQRWLKLLTKAVDEDVAILPDEELVFKVKP----KVDPLGVLPSTDYSTSLKVSAHGISVT-----TPSPNKGVDQEVEHYFWVYTDFYKWTLLS-QAGKLALLVNVFADATFNRRIEYIFRNKDALRLATAIEFFIEKFMCWMHIRLE 649          
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Match: A0A7S3JW23_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JW23_9STRA)

HSP 1 Score: 216 bits (551), Expect = 2.250e-59
Identity = 136/360 (37.78%), Postives = 195/360 (54.17%), Query Frame = 1
Query:    1 ILQVRSAMEFFWNRSRAEQCQPPQPGSAHGRVPYSVLSVKGEQKAPEPPLGRTVVVDVDGATVRPGQGAIGAATA----GTAARVASLVG------ERMTLKMNGRVKPHWDAVVVHSGWLLKQGGSSMQKWLWRFCVLYSTAQGHFLSYYVDIPETPLYSETGSHAERGTLDMSRIAFIRPVSAAKDTPPNAFDLVLLDKEWTLCADSPKAMLLWMQVLARAAESDVAVMPDDETVFRVALASGGEEGPGGAIYTVTGEALVKISSMGVSIQQLNGINSGSGMGDDGEVFYPYTDFFKWVLVDLRDGMHGLLLKCFLDDSFEA--RVERLIVHAHAADIAAHIEYHIEKFMAFMHLRYE 1044
            +LQ   A+E FWNR + ++  P  P S HGR    + ++ GE  AP  P+G   VVD +   VR G+ A    T+    G A R ++ VG      + M  ++  R   +WD++V H GWLLK+GG S + W+ R+ VLYSTA GHFL YY D  ++PL+       ER  +D+S+  FIRP S  K+ P N+FD+  +++EWTL A+S  +M  W+QV+ RA + DVA++PDDE +F V         P   +        +K+S+ GVS+      ++ S      + F+ YTDFFKW ++    G  GL +  F    F    R E L     A  +A  IE++IEKFMA MHL  E
Sbjct:  323 VLQAGCAVEHFWNRRQLKKGLPFMPKSTHGRTIIKINTLTGEIPAPPAPIGCLDVVDENNVLVRQGKLASARRTSINLSGNAKRKSTFVGTYVKGKKAMDFQIKPRTDKYWDSIVKHQGWLLKKGGVS-KNWIKRYAVLYSTAMGHFLCYYSDFVKSPLFHT--EERERRVIDLSKTTFIRPRSNNKEAPTNSFDICTIEREWTLSAESAASMQQWLQVITRAIDEDVAIVPDDELIFLVKP----RVDPSNKLLKNEYSTALKVSASGVSV-----CHAASNDELQEKFFWCYTDFFKWSILH-HSGKTGLQVSVFTSTDFNVKDRQEYLFRTRDAVKLATAIEFYIEKFMAAMHLYLE 669          
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Match: A0A7S2RWY5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWY5_9STRA)

HSP 1 Score: 209 bits (533), Expect = 4.600e-57
Identity = 134/355 (37.75%), Postives = 201/355 (56.62%), Query Frame = 1
Query:    1 ILQVRSAMEFFWNRSRAEQCQPPQPGSAHGRVPYSVLSVKGEQKAPEPPLGRTVVVDVDGATV--RPGQGAIGAATAGTAARVASLVGERM---TLKMNGRVKPHWDAVVVHSGWLLKQGGSSMQKWLWRFCVLYSTAQGHFLSYYVDIPETPLYSETGSHAERGTLDMSRIAFIRPVSAAKDTPPNAFDLVLLDKEWTLCADSPKAMLLWMQVLARAAESDVAVMPDDETVFRV-ALASGGEEGPGGAIYTVTGEALVKISSMGVSIQQLNGINSGSGMGDDGEVFY-PYTDFFKWVLVDLRDGMHGLLLKCFLDDSFEARVERLIVHAHAADIAAHIEYHIEKFMAFMHLRYE 1044
            I+ +R + EFF NR R  +  P +PG+ HGR      ++ GE  A EP  G T V+D D   +  RP Q            R  S+ G      +L    +VK HW  VV H+GWLLK+GG++ + WL R+ VL+ T QGHFLSYY +  ++PLY+   +  +R  +D+S+I ++R  S  +D PP +FD+  +++EWTLCA+S + + LW+Q+LA A + DVA++PDD   F V A A   +    G   TV     ++ISS GVS+Q++ G        +  EVF+  YTDF+KW ++  + G   L ++ F    F+ + + +     +  IA  IEY+IEKFM+ MH+R E
Sbjct:  319 IMHLRVSFEFFLNRFRHGKGLPAEPGTTHGRSVVGTHTLMGEVPAAEPATGVTEVLDEDNQPIHGRPAQ------------RKKSIFGXXXXXPSLIPLQQVKGHWSKVVNHNGWLLKKGGAT-KTWLKRYFVLFETCQGHFLSYYAEFWDSPLYNM--NRKQRNMIDLSKIVYLRAKSKHRDVPPFSFDIATIEREWTLCAESSEQLQLWLQLLASAVDEDVAIVPDDTLSFAVKARADPTDRLERGDYSTV-----LQISSWGVSVQKVKG-------SEREEVFFWCYTDFYKWSILK-QHGKMALSVQIFTTGDFKTKEDFIFRSTESQAIATAIEYYIEKFMSRMHIRRE 645          
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Match: A0A4D9CW09_9STRA (PH domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW09_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.360e-31
Identity = 87/271 (32.10%), Postives = 136/271 (50.18%), Query Frame = 1
Query:  325 GWLLKQGGSSMQKWLWRFCVLYSTAQGHFLSYYVDIPETPLYSETGSHAERGTLDMSRIAFIRPVSAAKDTPPNAFDLVLLDKEWTLCA-------------------------------DSPKAMLLWMQVLARAAESDVAVMPDDETVFRVALASGGEEGPGGAIYTVTGEALVKISSMGVSIQQLNGINSGSGMGDDGEVFYPYTDFFKWVLVDLRDGMHGLLLKCFLDDSFEARVERLIVHAHAADIAAHIEYHIEKFMAFMHLRYE 1044
            GWLLK+GG + +KWL R+ VLY T  GH L YY D+ ET L++      ER  +D  R+  +RPVS+  DTP  AFD+  +++ WT+CA                               D+   +  W+ +LA A + DVAV+PDDE  F V         P   +Y      ++++ + GV++  + G    +        F+PYTD F+W ++  + G   L L  F +D + A+ + +     A+ IA  +E++IEK+MA+ H+R E
Sbjct:  332 GWLLKKGGFN-RKWLKRYFVLYKTCMGHILCYYSDVHETALFAHHPQ--ERNVIDCCRVELLRPVSSTPDTPSCAFDVQSIERTWTVCAANEVGKEGXXXXXXXXXXXXXXXXXXXXXXXDADTDLQQWLLLLASAIDMDVAVLPDDEVSFLVKP----RVDPSMKLYLDEYSTILRVHAWGVNVDMMEGEKRHT------VCFWPYTDLFRWTILSQK-GKIALQLTVFKED-YSAKSDYIFRTRKASQIARTLEFYIEKYMAWAHMRLE 587          
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Match: A0A7S3HBT1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBT1_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.630e-25
Identity = 69/197 (35.03%), Postives = 114/197 (57.87%), Query Frame = 1
Query:  475 RGTLDMSRIAFIRPVSAAKD---TPPNAFDLVLLDKEWTLCADSPKAMLLWMQVLARAAESDVAVMPDDETVFRVALASGGEEGPGGAIYTVTGEALVKISSMGVSIQQLNGINSGSGMGDDGE----VFYPYTDFFKWVLVDLRDGMHGLLLKCFLDDSFEARVERLIVHAHAADIAAHIEYHIEKFMAFMHLRYE 1044
            R  +D+++  FIRP S  +D   TP + FD+V +++EWTLCA++      W+++L +A + DVA++PD+E VF+V      +  P G + +      +K+S+ G+S+       +   MG +G+     F+ YTDF+KW L+  + G   LL+  F D +F  R+E +  +  A  +A  IE+ IEKFM +MH+R E
Sbjct:    2 RTFVDLAKCCFIRPGSNKQDNPDTPAHCFDIVTVEREWTLCAENADNEQQWLKLLTKAVDEDVAILPDEELVFKVKP----KVDPLGILPSNDYSTSLKVSAHGISV-------TTPVMGKEGQELEHYFWVYTDFYKWTLLS-QAGKLALLVNVFADATFNRRIEYIFRNKDALRLATAIEFFIEKFMCWMHIRLE 186          
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Match: A0A7S2GJS5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJS5_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.090e-22
Identity = 66/189 (34.92%), Postives = 96/189 (50.79%), Query Frame = 1
Query:   19 AMEFFWNRSRAEQCQPPQPGSAHGRVPYSVLSVKGEQKAPEPPLGRTVVVDVDG---------ATVRPGQGAIGAATAGTAARVASLV------GERMTLKMNGRVKPHWDAVVVHSGWLLKQGGSSMQKWLWRFCVLYSTAQGHFLSYYVDIPETPLYSETGSHAERGTLDMSRIAFIRPVSAAKDTP 540
            A+EFF+NR    + +  +  + HGR    + ++ GE   P  P G   + D+DG         + ++PG  A      G   R  +L+      G    +  N     HW+ V  H GWLLK+GG + + W  R+ VLYSTAQGHFL YY D  ++PLYS     AER  +D+S+  FIRP++  +  P
Sbjct:  203 AVEFFYNRMLETKGKVAKKQTTHGRRVVKMHTLTGEIIPPAYPQGNLTITDMDGHLIRPANAGSNIKPGFAASSGPARGNTGRRRTLLARVTNQGSGGVVHENREATGHWNTVCKHQGWLLKKGGRT-KTWQKRYAVLYSTAQGHFLCYYSDYTDSPLYST--QQAERNIIDLSKTTFIRPITKTEGAP 388          
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Match: A0A7S3HBI0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBI0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.210e-20
Identity = 66/158 (41.77%), Postives = 86/158 (54.43%), Query Frame = 1
Query:    1 ILQVRSAMEFFWNRSRAEQCQPPQP--GSAHGRVPYSVLSVKGEQKA-PEPP-LGRTVVVDVDGATVRPGQGAIGAATAGTAARVASLVGERMTLKMNGRVKPHWDAVVVHSGWLLKQGG---SSMQKWLWRFCVLYSTAQGHFLSYYVDIPETPLYS 453
            +  V+   EFFWN+ R  + Q  Q   GS HGR   S+ ++ GE  A P+   LG T V D+DG+TV      +G   A    R   L        +N  VKPHW  VV+H GWLLKQGG    + + W+ R+ VLY T+QGHFL YY D  E P+Y+
Sbjct:  302 VRDVKHTFEFFWNKYRVGRGQSDQVKLGSTHGRPIVSLTTLSGEVAATPDMDVLGITEVRDIDGSTVH-----VGGKLAPRTTRAEQLP----VPPINREVKPHWHKVVLHQGWLLKQGGIGVGASKSWIKRYFVLYKTSQGHFLVYYSDFTECPMYT 450          
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Match: A0A7S3XP44_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP44_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 2.670e-5
Identity = 37/101 (36.63%), Postives = 49/101 (48.51%), Query Frame = 1
Query:  760 KISSMGVSIQQLNGINSGSGMGDDGEVFYPYTDFFKWVLVDLRDG------MHGLLLKCFLDDSFEARVERLIVHAHAADIAAHIEYHIEKFMAFMHLRYE 1044
            K S  G+ +     I   S +      F+ YTDFFKW +V  ++         GL+L  F D SF  +         A ++A  IE+HIEKFMA MHLR E
Sbjct:    7 KASDEGIVVDHRENIICTSSLNQ----FWCYTDFFKWSVVYKKEKNKEKKRARGLMLHVFTDTSFHNKFVLYFKTKAATELATTIEFHIEKFMARMHLRKE 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7940.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JGM0_9PHAE2.940e-6937.60PH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A482S2P2_9ARCH1.790e-6841.27PH domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S3HC11_9STRA4.050e-6138.36Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3JW23_9STRA2.250e-5937.78Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2RWY5_9STRA4.600e-5737.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CW09_9STRA1.360e-3132.10PH domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A7S3HBT1_9STRA1.630e-2535.03Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2GJS5_9STRA2.090e-2234.92Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3HBI0_9STRA1.210e-2041.77Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3XP44_HETAK2.670e-536.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7940contigP-wetherbeei_contig7940:273..1758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LG12
PFAMsPH
Model size1056
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.56e-72
EggNOG OGs2CETD@1|root,2S3H4@2759|Eukaryota
DescriptionPleckstrin homology domain.
Cds size1035
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.6303158-UTR-P-wetherbeei_contig7940:272..2931683187010.6303158-UTR-P-wetherbeei_contig7940:272..293Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7940 273..293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.6419754-CDS-P-wetherbeei_contig7940:293..4731683187010.6419754-CDS-P-wetherbeei_contig7940:293..473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7940 294..473 +
1683187010.6525226-CDS-P-wetherbeei_contig7940:527..7281683187010.6525226-CDS-P-wetherbeei_contig7940:527..728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7940 528..728 +
1683187010.6622791-CDS-P-wetherbeei_contig7940:1032..14331683187010.6622791-CDS-P-wetherbeei_contig7940:1032..1433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7940 1033..1433 +
1683187010.6722748-CDS-P-wetherbeei_contig7940:1505..17581683187010.6722748-CDS-P-wetherbeei_contig7940:1505..1758Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7940 1506..1758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7940.1.1prot_P-wetherbeei_contig7940.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7940 294..1758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7940.1.1

>prot_P-wetherbeei_contig7940.1.1 ID=prot_P-wetherbeei_contig7940.1.1|Name=mRNA_P-wetherbeei_contig7940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=345bp
MEFFWNRSRAEQCQPPQPGSAHGRVPYSVLSVKGEQKAPEPPLGRTVVVD
VDGATVRPGQGAIGAATAGTAARVASLVGERMTLKMNGRVKPHWDAVVVH
SGWLLKQGGSSMQKWLWRFCVLYSTAQGHFLSYYVDIPETPLYSETGSHA
ERGTLDMSRIAFIRPVSAAKDTPPNAFDLVLLDKEWTLCADSPKAMLLWM
QVLARAAESDVAVMPDDETVFRVALASGGEEGPGGAIYTVTGEALVKISS
MGVSIQQLNGINSGSGMGDDGEVFYPYTDFFKWVLVDLRDGMHGLLLKCF
LDDSFEARVERLIVHAHAADIAAHIEYHIEKFMAFMHLRYETHSG
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mRNA from alignment at P-wetherbeei_contig7940:273..1758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7940.1.1 ID=mRNA_P-wetherbeei_contig7940.1.1|Name=mRNA_P-wetherbeei_contig7940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1486bp|location=Sequence derived from alignment at P-wetherbeei_contig7940:273..1758+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCTGCAGGTGCGGAGCGCCATGGAGTTCTTCTGGAACCGCTCGCGCGC TGAGCAGTGCCAGCCGCCGCAGCCGGGCTCGGCGCACGGCCGTGTCCCGT ATTCGGTGCTGAGCGTCAAGGGCGAACAGAAGGCGCCCGAGCCGCCGCTG GGCCGCACCGTCGTCGTTGACGTCGATGGCGCCACCGTGCGGCCGGGTCA GGTGCTCAAGTCGCCCAAGAACCCAAACCTGCGGCGCTCCTCCAAGTCGG CCAAGGGCGCGATCGGGGCGGCAACGGCGGGCACGGCGGCACGCGTGGCG TCGCTGGTCGGGGAGCGCATGACGTTGAAGATGAACGGGCGGGTCAAGCC GCACTGGGATGCCGTCGTAGTACACAGCGGCTGGCTACTCAAGCAGGGCG GCAGCTCCATGCAGAAGTGGCTCTGGCGCTTCTGCGTCCTCTACTCCACC GCGCAGGTGAGGCGGGCGGTGGAGCTTGGAAGGGTGGAATTCTTTCGTCA ACTGCCTGGTGAGTGTGCCGTGCCTTCCATGCGGCCTTCTTTCCCCTCTT TACTACGCGAAAGGTTGCTTTTCCCCTCTCTGTCTGGCGTCGGCGGCGCC AGATGGCGACAAACAATTGATTTCAGCATCATTCTGAAACATCCGCGCTT CTTTTCTTATGGTTTCCTGCCCGCTCCTTGTTGACTGCCGCCTGCCATGC CACTCTTGCTGCTGCTTTCCTCGCGTTCTCCGTTCTTTCCCCTCTCACTT TGCTGCACAGGGCCACTTCCTCTCGTACTACGTAGACATTCCCGAGACGC CGCTCTACTCGGAGACCGGCAGCCACGCGGAGCGCGGCACCCTCGACATG TCACGTATCGCCTTCATCCGCCCCGTCTCCGCCGCAAAAGACACGCCGCC CAACGCCTTCGACCTCGTGCTGCTGGACAAGGAGTGGACGCTCTGCGCCG ACTCGCCCAAGGCGATGCTGCTATGGATGCAGGTGTTGGCGCGGGCCGCT GAGTCGGACGTCGCCGTCATGCCTGACGACGAGACCGTCTTCCGCGTGGC GCTGGCGTCCGGCGGCGAGGAGGGGCCAGGCGGCGCCATTTACACGGTCA CGGGGGAGGCGCTCGTCAAGATTTCTAGCATGGGCGTCTCCATCCAGCAG CTCAATGGCATGTCGACGCCGCACGCCTCGCACGTGCATCACGGCGCGCA TGCTTCCTACACGCCCCGCGGCGGTAACGGCAGCAATAGCGGAAGCGGCA TGGGCGACGACGGGGAGGTGTTTTACCCATACACGGACTTTTTCAAGTGG GTGCTCGTGGACCTGAGGGACGGCATGCACGGGCTGCTGCTCAAGTGCTT CCTGGATGACTCTTTCGAGGCGCGCGTCGAGCGGCTCATCGTGCACGCCC ACGCCGCCGACATCGCCGCCCACATCGAGTACCACATCGAAAAGTTCATG GCCTTCATGCACCTCCGCTACGAAACGCACTCAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7940:273..1758+

>mRNA_P-wetherbeei_contig7940.1.1 ID=mRNA_P-wetherbeei_contig7940.1.1|Name=mRNA_P-wetherbeei_contig7940.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1035bp|location=Sequence derived from alignment at P-wetherbeei_contig7940:273..1758+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTTCTTCTGGAACCGCTCGCGCGCTGAGCAGTGCCAGCCGCCGCA
GCCGGGCTCGGCGCACGGCCGTGTCCCGTATTCGGTGCTGAGCGTCAAGG
GCGAACAGAAGGCGCCCGAGCCGCCGCTGGGCCGCACCGTCGTCGTTGAC
GTCGATGGCGCCACCGTGCGGCCGGGTCAGGGCGCGATCGGGGCGGCAAC
GGCGGGCACGGCGGCACGCGTGGCGTCGCTGGTCGGGGAGCGCATGACGT
TGAAGATGAACGGGCGGGTCAAGCCGCACTGGGATGCCGTCGTAGTACAC
AGCGGCTGGCTACTCAAGCAGGGCGGCAGCTCCATGCAGAAGTGGCTCTG
GCGCTTCTGCGTCCTCTACTCCACCGCGCAGGGCCACTTCCTCTCGTACT
ACGTAGACATTCCCGAGACGCCGCTCTACTCGGAGACCGGCAGCCACGCG
GAGCGCGGCACCCTCGACATGTCACGTATCGCCTTCATCCGCCCCGTCTC
CGCCGCAAAAGACACGCCGCCCAACGCCTTCGACCTCGTGCTGCTGGACA
AGGAGTGGACGCTCTGCGCCGACTCGCCCAAGGCGATGCTGCTATGGATG
CAGGTGTTGGCGCGGGCCGCTGAGTCGGACGTCGCCGTCATGCCTGACGA
CGAGACCGTCTTCCGCGTGGCGCTGGCGTCCGGCGGCGAGGAGGGGCCAG
GCGGCGCCATTTACACGGTCACGGGGGAGGCGCTCGTCAAGATTTCTAGC
ATGGGCGTCTCCATCCAGCAGCTCAATGGCATCAATAGCGGAAGCGGCAT
GGGCGACGACGGGGAGGTGTTTTACCCATACACGGACTTTTTCAAGTGGG
TGCTCGTGGACCTGAGGGACGGCATGCACGGGCTGCTGCTCAAGTGCTTC
CTGGATGACTCTTTCGAGGCGCGCGTCGAGCGGCTCATCGTGCACGCCCA
CGCCGCCGACATCGCCGCCCACATCGAGTACCACATCGAAAAGTTCATGG
CCTTCATGCACCTCCGCTACGAAACGCACTCAGGC
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