mRNA_P-wetherbeei_contig794.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig794.5.1
Unique NamemRNA_P-wetherbeei_contig794.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Match: D7G5U7_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U7_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 7.700e-15
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  308 VSPNAGD-YAWIVLVAAGGAAITSFVTGANNMANSFAPSVGSKALTYRQALVLAVVFTLFAAVFLSESDFDTLTEDVVKSACFADDPAAFMYGLSC 592
            ++P A D + WI++VAA GA   +F  GAN++AN+FA SVG+KALT +QA+VLA VF    AVFL      T+ + +    CF D+P   MYG  C
Sbjct:   36 LAPEATDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGVFEFLGAVFLGSHVTKTIRKGIADIECFQDNPGILMYGNMC 131          
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.700e-13
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  329 YAWIVLVAAGGAAITSFVTGANNMANSFAPSVGSKALTYRQALVLAVVFTLFAAVFLSESDFDTLTEDVVKSACFADDPAAFMYGLSC 592
            + WIV+V A GA   +F  GAN++AN+FA SVG+KALT +QA+VLA +F    AVFL      T+   +  + CF D+P   MYG  C
Sbjct:   19 FLWIVIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVFLGSHVTKTIRSGIADTECFEDNPGILMYGNMC 106          
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Match: A0A7S0QA31_9EUKA (Phosphate transporter n=3 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QA31_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 5.040e-13
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  326 DYAWIVLVAAGGAAITSFVTGANNMANSFAPSVGSKALTYRQALVLAVVFTLFAAVFLSESDFDTLTEDVVKSACFADDPAAFMYGLSC 592
            DY WIV+  A G+   +F  GAN++AN+FA SVGS+ALT +QA VLA VF +  A+ +      T+ + +    CF D+PA  MYG  C
Sbjct:    7 DYEWIVVAGAIGSFFAAFGIGANDVANAFATSVGSRALTVKQACVLATVFEVSGAILMGSHVTGTIRKSIADIDCFVDEPAVLMYGCLC 95          
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.260e-12
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  335 WIVLVAAGGAAITSFVTGANNMANSFAPSVGSKALTYRQALVLAVVFTLFAAVFLSESDFDTLTEDVVKSACFADDPAAFMYGLSC 592
            WI++VA+ GA   +F  GAN++AN+FA SVG+KALT +QA+VLA +F    AVFL      T+ + +    CF D+P   MYG  C
Sbjct:   20 WILIVASFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAAIFEFAGAVFLGSHVTKTIRKGIADIECFEDNPGILMYGNMC 105          
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.300e-12
Identity = 40/88 (45.45%), Postives = 52/88 (59.09%), Query Frame = 2
Query:  329 YAWIVLVAAGGAAITSFVTGANNMANSFAPSVGSKALTYRQALVLAVVFTLFAAVFLSESDFDTLTEDVVKSACFADDPAAFMYGLSC 592
            + WI++V   GA   +F  GAN++AN+FA SVG+KALT RQA+VLA +F    AVFL      T+        CF D+P   MYG  C
Sbjct:   19 FLWILIVGTFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTSTIRSGTADIECFTDNPGILMYGNMC 106          
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Match: A0A7S4I974_9EUKA (Phosphate transporter n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4I974_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 1.510e-11
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  326 DYAWIVLVAAGGAAITSFVTGANNMANSFAPSVGSKALTYRQALVLAVVFTLFAAVFLSESDFDTLTEDVVKSACFADDPAAFMYG 583
            +Y WIV+     A   +F  GAN++AN++A SVGSKALT +QA VLAV+F    A        DT+ + +    CF+DDPA  MYG
Sbjct:   16 EYEWIVVFGGFVAFAAAFGIGANDVANAYATSVGSKALTIKQACVLAVIFEFLGAFLAGSQVTDTIRKGIADYECFSDDPALLMYG 101          
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Match: R1E8F7_EMIHU (Phosphate transporter (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E8F7_EMIHU)

HSP 1 Score: 72.4 bits (176), Expect = 1.870e-11
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  326 DYAWIVLVAAGGAAITSFVTGANNMANSFAPSVGSKALTYRQALVLAVVFTLFAAVFLSESDFDTLTEDVVKSACFADDPAAFMYGLSC 592
            +Y WIV+  A  A I +F  GAN++AN+FA SVGSKA+T RQA  LAVVF +  AV L      T+ + +  + CFA  P   M+G  C
Sbjct:    3 EYEWIVVAGAVTAFIAAFGIGANDVANAFATSVGSKAITIRQACFLAVVFEVSGAVLLGSHVTRTIRKGIADADCFAGQPEVLMFGSLC 91          
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Match: A0A8J5XQ90_DIALT (Phosphate transporter n=4 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQ90_DIALT)

HSP 1 Score: 72.0 bits (175), Expect = 2.700e-11
Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 2
Query:  329 YAWIVLVAAGGAAITSFVTGANNMANSFAPSVGSKALTYRQALVLAVVFTLFAAVFLSESDFDTLTEDVVKSACFADDPAAFMYGL 586
            Y WIV++AA  +  TSF  GAN++AN+FA SVGSKALT R A+ +A V     A+ L  S  DT+   +    CF D PA  M+G+
Sbjct:   10 YTWIVVLAALFSFFTSFGIGANDVANAFATSVGSKALTIRNAMCIAAVMEFAGALLLGASVSDTIRSSIADVKCFVDMPAVLMWGM 95          
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Match: F0XVH5_AURAN (Phosphate transporter n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVH5_AURAN)

HSP 1 Score: 71.6 bits (174), Expect = 4.000e-11
Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  326 DYAWIVLVAAGGAAITSFVTGANNMANSFAPSVGSKALTYRQALVLAVVFTLFAAVFLSESDFDTLTEDVVKSACFADDPAAFMYGLSC 592
            D+ W+++ A   A   +F  GAN++ANS+A SVGSKA+T +QA+VLA +F    A+ +  S   T+ + +    CF D+P   +YG++C
Sbjct:   71 DFTWLIVCAGFLAFAAAFGIGANDVANSYATSVGSKAITIKQAVVLAAIFEFLGALLMGSSVSKTMRKGIADVECFDDNPGLLIYGMTC 159          
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 5.000e-11
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  326 DYAWIVLVAAGGAAITSFVTGANNMANSFAPSVGSKALTYRQALVLAVVFTLFAAVFLSESDFDTLTEDV-------VKSACFADDPAAFMYGLSC 592
            ++ WIV+V++ GA   +F  GAN++AN+FA SVG++ALT +QA+VLA VF    AVFL      T+   +       ++  CF D+P   MYG  C
Sbjct:   18 EFLWIVIVSSIGAVFAAFGIGANDLANAFATSVGARALTIKQAVVLAGVFEFLGAVFLGSHVAKTIRSGIADYQPSTLQVGCFVDNPGILMYGNMC 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig794.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5U7_ECTSI7.700e-1546.88High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D7G0K9_ECTSI3.700e-1346.59Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
A0A7S0QA31_9EUKA5.040e-1344.94Phosphate transporter n=3 Tax=Coccolithus braarudi... [more]
A0A6H5JNE7_9PHAE1.260e-1246.51Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FZJ7_ECTSI4.300e-1245.45Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A7S4I974_9EUKA1.510e-1145.35Phosphate transporter n=1 Tax=Prymnesium polylepis... [more]
R1E8F7_EMIHU1.870e-1146.07Phosphate transporter (Fragment) n=1 Tax=Emiliania... [more]
A0A8J5XQ90_DIALT2.700e-1146.51Phosphate transporter n=4 Tax=Diacronema lutheri T... [more]
F0XVH5_AURAN4.000e-1139.33Phosphate transporter n=1 Tax=Aureococcus anophage... [more]
D7FWT9_ECTSI5.000e-1141.67Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig794contigP-wetherbeei_contig794:7797..8510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size594
Hectar predicted targeting categoryother localisation
Exons2
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.5441344-CDS-P-wetherbeei_contig794:7796..79331683187010.5441344-CDS-P-wetherbeei_contig794:7796..7933Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig794 7797..7933 -
1683187010.5541878-CDS-P-wetherbeei_contig794:8053..83811683187010.5541878-CDS-P-wetherbeei_contig794:8053..8381Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig794 8054..8381 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.564346-UTR-P-wetherbeei_contig794:8381..85101683187010.564346-UTR-P-wetherbeei_contig794:8381..8510Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig794 8382..8510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig794.5.1prot_P-wetherbeei_contig794.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig794 7797..8381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig794.5.1

>prot_P-wetherbeei_contig794.5.1 ID=prot_P-wetherbeei_contig794.5.1|Name=mRNA_P-wetherbeei_contig794.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MKSHSTDLRKSFAGGVLNLPFTSQLVSLNGRRSERFPVKDFTLSGRVSSR
GQALASDDYGQPQCWRLRMDCFSSGRRSGDNLLRYRGKQHGKLLRAFRRL
QGADVPPSFGTRGSVYVVCRRLPQRVGLRHADGGRRQVRLLRGRPRRIYV
RPELR
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mRNA from alignment at P-wetherbeei_contig794:7797..8510-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig794.5.1 ID=mRNA_P-wetherbeei_contig794.5.1|Name=mRNA_P-wetherbeei_contig794.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig794:7797..8510- (Phaeothamnion wetherbeei SAG_119_79)
CCTGGAAAAAGACTTCGCATCATGATGGTTTGGGCGGGGAACAAAATATG AAGTCTTACAACAGTTGCTTGGGCAGAGCACCTGCAACAAAATTTCTCCT GCCGTTCAGCCGTTTCGAGAAGGAAACGGATGAAAAGCCATTCGACGGAT TTGAGAAAATCCTTCGCTGGCGGAGTACTGAACTTGCCTTTTACATCACA GCTTGTTTCCCTTAATGGCCGCCGCTCCGAACGGTTTCCTGTAAAAGACT TCACGCTTTCTGGACGCGTCTCCTCACGGGGACAAGCGTTGGCGAGCGAT GACTACGGTCAGCCCCAATGCTGGAGATTACGCATGGATTGTTTTAGTAG CGGCAGGAGGAGCGGCGATAACCTCCTTCGTTACAGGGGCAAACAACATG GCAAACTCCTTCGCGCCTTCCGTCGGCTCCAAGGCGCTGACGTACCGCCA AGCTTTGGTAAGACTTCAAGACTTGATCTCCCCTCCCGACATTTTTCATT TCTCGTTTGTGCGGTACAGATGATGAAAAGTTCAATGCCAAGCCCCCTCA TTCCAAACACACACTCGCGACACGCAGGTACTCGCGGTAGTGTTTACGTT GTTTGCCGCCGTCTTCCTCAGCGAGTCGGACTTCGACACGCTGACGGAGG ACGTCGTCAAGTCCGCCTGCTTCGCGGACGACCCCGCCGCATTTATGTAC GGCCTGAGCTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig794:7797..8510-

>mRNA_P-wetherbeei_contig794.5.1 ID=mRNA_P-wetherbeei_contig794.5.1|Name=mRNA_P-wetherbeei_contig794.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig794:7797..8510- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAGCCATTCGACGGATTTGAGAAAATCCTTCGCTGGCGGAGTACT
GAACTTGCCTTTTACATCACAGCTTGTTTCCCTTAATGGCCGCCGCTCCG
AACGGTTTCCTGTAAAAGACTTCACGCTTTCTGGACGCGTCTCCTCACGG
GGACAAGCGTTGGCGAGCGATGACTACGGTCAGCCCCAATGCTGGAGATT
ACGCATGGATTGTTTTAGTAGCGGCAGGAGGAGCGGCGATAACCTCCTTC
GTTACAGGGGCAAACAACATGGCAAACTCCTTCGCGCCTTCCGTCGGCTC
CAAGGCGCTGACGTACCGCCAAGCTTTGGTACTCGCGGTAGTGTTTACGT
TGTTTGCCGCCGTCTTCCTCAGCGAGTCGGACTTCGACACGCTGACGGAG
GACGTCGTCAAGTCCGCCTGCTTCGCGGACGACCCCGCCGCATTTATGTA
CGGCCTGAGCTGCGC
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