mRNA_P-wetherbeei_contig794.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig794.1.1
Unique NamemRNA_P-wetherbeei_contig794.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig794.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig794contigP-wetherbeei_contig794:2..2794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2226
Hectar predicted targeting categoryother localisation
Exons3
Cds size1410
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.4089742-UTR-P-wetherbeei_contig794:1..381683187010.4089742-UTR-P-wetherbeei_contig794:1..38Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig794 2..38 +
1683187010.4553568-UTR-P-wetherbeei_contig794:2015..27941683187010.4553568-UTR-P-wetherbeei_contig794:2015..2794Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig794 2016..2794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.4214082-CDS-P-wetherbeei_contig794:38..4831683187010.4214082-CDS-P-wetherbeei_contig794:38..483Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig794 39..483 +
1683187010.431134-CDS-P-wetherbeei_contig794:849..9771683187010.431134-CDS-P-wetherbeei_contig794:849..977Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig794 850..977 +
1683187010.4389741-CDS-P-wetherbeei_contig794:1178..20151683187010.4389741-CDS-P-wetherbeei_contig794:1178..2015Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig794 1179..2015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig794.1.1prot_P-wetherbeei_contig794.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig794 39..2015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig794.1.1

>prot_P-wetherbeei_contig794.1.1 ID=prot_P-wetherbeei_contig794.1.1|Name=mRNA_P-wetherbeei_contig794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=470bp
MPPPPPPMLTMAAAAANGPVWDPQFQQLTYGGLTAAAGQARQDGGGTQFY
PQPDAQAQGQTAGGGGESSTASGGTEAAGGGVGAEQQQQPGVDGAGGQMQ
PEEEQGQQQMPPQQQFQWSYQGQEQQQQMGNPYAYGYNHEGGYNPYAYGV
PNLPYMQGHIAPGANGMYGGGNGGGGSNGGGGGNMGPSYRQANCGGTNGH
GNNTGGSSGHRGGGGGGGGGGGGGHRGRGGGSSGGHETTATALISQQKQQ
QQSRRGHRSGGGGKKKASRAHGRDSPDVSPKTLVTANGEPKGDSVAAVAA
APAGGGKDAPKGAPATTEKTGKVPTADKAAVSAPAEAMTPKGAGAGGKNR
GARAESEARAADAAAGAPRSVSAAPGAAVPSKAPEPAVAEPSKTPAEAFK
PAVPATPARPAVTELPGRSGTGDKAPAAGEGMSAAGSVDLSAPTSAKTVA
PAPARAPAPAVTTATPPQE*
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mRNA from alignment at P-wetherbeei_contig794:2..2794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig794.1.1 ID=mRNA_P-wetherbeei_contig794.1.1|Name=mRNA_P-wetherbeei_contig794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2793bp|location=Sequence derived from alignment at P-wetherbeei_contig794:2..2794+ (Phaeothamnion wetherbeei SAG_119_79)
TGCGGCGCCCTCTCCGAGCCTCCTCGACCCACCGGGCATGCCACCGCCGC
CGCCACCGATGCTGACGATGGCGGCGGCGGCCGCCAACGGACCTGTCTGG
GATCCCCAGTTCCAGCAGCTGACCTACGGCGGCCTCACGGCGGCGGCAGG
CCAGGCGAGGCAGGACGGCGGCGGGACTCAGTTCTACCCGCAGCCGGATG
CGCAGGCGCAGGGGCAGACCGCCGGCGGCGGCGGCGAGTCGTCGACGGCG
TCGGGAGGCACGGAGGCGGCAGGCGGCGGCGTTGGCGCCGAGCAGCAGCA
GCAGCCGGGGGTGGACGGCGCTGGTGGACAGATGCAGCCAGAGGAGGAAC
AGGGGCAGCAGCAGATGCCGCCGCAGCAGCAGTTCCAGTGGAGTTATCAG
GGCCAGGAGCAGCAGCAGCAGATGGGTAACCCTTATGCGTACGGCTACAA
CCACGAGGGCGGCTACAACCCCTACGCCTATGGTGAGAGAGGATCTGAGT
GGAGCGGTCTGCCAGGTGGCGGCTAGCGACGCTGCTGGCGATGGCTGCTG
TCAGTGTAGCAAGCGAGAGGCTATAAGAGCCTGCAGTGCTGCGAAAGCCG
AAGCGAGTTGCGGACCTCCGCTTGTTGCTGTTGAGTAGGCCAAAGCGGGT
TGATGCATCCTCCCTCTGTTCTCTTTCTCTGCCCGTGTGGTCAGTGACGG
CCTACGTGACGATTGCTTACCAAAGCCATGAATCGCGCGCCAGTCGTGAC
CGGATTTAACCTCGCTTTCGGGTCGCTCTTTCTTGTTTTTCCTCTTGCGG
GTTTTTACTTCCGCCTTTGCGATCGACCTTCCATATCTGCCTTGTCAGGT
GTTCCGAACCTGCCGTACATGCAGGGACACATAGCCCCCGGCGCAAATGG
CATGTACGGTGGCGGCAACGGTGGCGGCGGCAGCAATGGCGGCGGCGGCG
GAAACATGGGGCCTTCGTACCGGCAGGTGAGGTGAAGCAGGCGGCAGAAT
GGGAGAGCTGACGAGGTGTAGTTGTGAAATACGAGTAACGAAGGACGGTC
AAAAGAGCTTTTGTTGCTACCTCCAAGGATTTGTCGGCTTTTCGTTCCTC
GTTGTGCGGGCGGAAGTGAGTTTGCACATGCCGCATTGTTCATTTGCACG
ATTTGTTATTCCCGGCATCCTTTTCAGGCGAATTGCGGCGGCACCAACGG
CCACGGCAACAATACCGGGGGCAGCTCTGGTCACCGCGGCGGTGGCGGCG
GAGGCGGCGGCGGCGGAGGCGGCGGCCACCGGGGACGGGGCGGTGGCAGC
AGCGGCGGTCACGAGACGACTGCCACGGCCCTGATTTCGCAGCAGAAGCA
GCAGCAGCAGAGTCGCAGAGGGCACCGCTCTGGCGGCGGTGGCAAGAAGA
AGGCGTCGCGGGCCCACGGCCGTGACTCGCCAGACGTGTCTCCCAAGACG
CTGGTGACGGCAAACGGCGAGCCCAAGGGCGACAGTGTCGCCGCCGTGGC
GGCGGCACCAGCCGGCGGCGGGAAGGATGCGCCGAAGGGAGCGCCTGCGA
CGACCGAAAAGACCGGAAAAGTGCCGACGGCGGACAAGGCTGCAGTGTCG
GCGCCGGCCGAAGCGATGACCCCGAAGGGCGCCGGCGCCGGCGGCAAGAA
CCGCGGCGCGCGAGCGGAATCCGAGGCGCGGGCGGCGGACGCAGCCGCGG
GAGCCCCCAGAAGCGTGTCGGCGGCGCCGGGTGCGGCGGTGCCTTCCAAG
GCGCCAGAGCCTGCCGTTGCAGAGCCGTCCAAGACGCCAGCGGAGGCCTT
CAAGCCGGCTGTGCCTGCGACGCCGGCGAGGCCGGCGGTGACGGAGCTGC
CGGGGCGGAGCGGCACTGGCGACAAGGCGCCGGCCGCCGGCGAGGGGATG
AGCGCGGCTGGTAGCGTGGATTTGTCGGCGCCCACGTCGGCGAAGACGGT
GGCCCCGGCGCCGGCCCGGGCGCCCGCTCCGGCCGTGACAACCGCAACGC
CTCCTCAGGAATGAGGCGCTAAGTGGTCTGAACGAGCGAGCGGTTCCGTC
GCCTTCCGCCCGACCGATCGACCGGCAAGCCGCGTCGATGCGACCGCCGG
AGGCTGTGGGTGCCTGGCAGGCACTGTTATTGGAACGGCGTTGCACGTGT
TCCAGATTGTGTGTAACGGACGCGGCAGCGCCACAAGCGGAGAACGGGGC
GGCCGCTTCGAAGAGAAGACGGGCGGCAGGAGCGGGGCTGGAGTTTGAGC
TGTCGGAGGGAAGCGGCTTATCGACTGCCGCCGGCGTTCCTACTGTCGTC
AACTTGTTGGGTGGTCAAGCCGGCGGCGACGGCCGCTGCGGCGGCAGTGG
TCGCAGCGGCAGTGGTGACCCCAGAGGCAGCGACGGTGGCGGCGGCAGCA
GCAGCAGCGCGTGGCCACGCGGTTGCCGCAGGGAACGGCTCCAGTGCAGC
CGTAGTGATGTGTGCCGCTGCCGCCGCACCTCCGTCTATCTTCAGCTTGC
GTGGCGGCGCCGGCATTTGCGGCCGTAACGCCGGTGCCGTACCGCCGGGC
AGTTGACGCTCGGCAGTAAAAAAGCGGCCCGTTGCGCAGCGAAAAGCAAG
GAAACTCGTGGTGGTAGCGGTGGGCGGCCTGGGGGGCGGAGGCGGAAGGG
CGAGGGGCATGCATTCGGGGCGGGTACAGCGAGGGAAGACGAGGCGGGGT
GGCGGGAATTTCATTATCCGCGGAAGGCACCGCGGCGGGGGACGAAAACC
AAGACGGGAGATGGGGTAGGGAAAGAGAAGACGGGTGTGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig794:2..2794+

>mRNA_P-wetherbeei_contig794.1.1 ID=mRNA_P-wetherbeei_contig794.1.1|Name=mRNA_P-wetherbeei_contig794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1410bp|location=Sequence derived from alignment at P-wetherbeei_contig794:2..2794+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACCGCCGCCGCCACCGATGCTGACGATGGCGGCGGCGGCCGCCAA
CGGACCTGTCTGGGATCCCCAGTTCCAGCAGCTGACCTACGGCGGCCTCA
CGGCGGCGGCAGGCCAGGCGAGGCAGGACGGCGGCGGGACTCAGTTCTAC
CCGCAGCCGGATGCGCAGGCGCAGGGGCAGACCGCCGGCGGCGGCGGCGA
GTCGTCGACGGCGTCGGGAGGCACGGAGGCGGCAGGCGGCGGCGTTGGCG
CCGAGCAGCAGCAGCAGCCGGGGGTGGACGGCGCTGGTGGACAGATGCAG
CCAGAGGAGGAACAGGGGCAGCAGCAGATGCCGCCGCAGCAGCAGTTCCA
GTGGAGTTATCAGGGCCAGGAGCAGCAGCAGCAGATGGGTAACCCTTATG
CGTACGGCTACAACCACGAGGGCGGCTACAACCCCTACGCCTATGGTGTT
CCGAACCTGCCGTACATGCAGGGACACATAGCCCCCGGCGCAAATGGCAT
GTACGGTGGCGGCAACGGTGGCGGCGGCAGCAATGGCGGCGGCGGCGGAA
ACATGGGGCCTTCGTACCGGCAGGCGAATTGCGGCGGCACCAACGGCCAC
GGCAACAATACCGGGGGCAGCTCTGGTCACCGCGGCGGTGGCGGCGGAGG
CGGCGGCGGCGGAGGCGGCGGCCACCGGGGACGGGGCGGTGGCAGCAGCG
GCGGTCACGAGACGACTGCCACGGCCCTGATTTCGCAGCAGAAGCAGCAG
CAGCAGAGTCGCAGAGGGCACCGCTCTGGCGGCGGTGGCAAGAAGAAGGC
GTCGCGGGCCCACGGCCGTGACTCGCCAGACGTGTCTCCCAAGACGCTGG
TGACGGCAAACGGCGAGCCCAAGGGCGACAGTGTCGCCGCCGTGGCGGCG
GCACCAGCCGGCGGCGGGAAGGATGCGCCGAAGGGAGCGCCTGCGACGAC
CGAAAAGACCGGAAAAGTGCCGACGGCGGACAAGGCTGCAGTGTCGGCGC
CGGCCGAAGCGATGACCCCGAAGGGCGCCGGCGCCGGCGGCAAGAACCGC
GGCGCGCGAGCGGAATCCGAGGCGCGGGCGGCGGACGCAGCCGCGGGAGC
CCCCAGAAGCGTGTCGGCGGCGCCGGGTGCGGCGGTGCCTTCCAAGGCGC
CAGAGCCTGCCGTTGCAGAGCCGTCCAAGACGCCAGCGGAGGCCTTCAAG
CCGGCTGTGCCTGCGACGCCGGCGAGGCCGGCGGTGACGGAGCTGCCGGG
GCGGAGCGGCACTGGCGACAAGGCGCCGGCCGCCGGCGAGGGGATGAGCG
CGGCTGGTAGCGTGGATTTGTCGGCGCCCACGTCGGCGAAGACGGTGGCC
CCGGCGCCGGCCCGGGCGCCCGCTCCGGCCGTGACAACCGCAACGCCTCC
TCAGGAATGA
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