mRNA_P-wetherbeei_contig7939.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7939.3.1
Unique NamemRNA_P-wetherbeei_contig7939.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7939.3.1 vs. uniprot
Match: A0A8J2X0P4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0P4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.580e-12
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   40 AASDARRRELATLGKWIPYRDKNGRGTFYYNTVSRASQWAVPPDYVVDRNYLVK 201
            AA   ++ + + +G W+PYRDK GRG FYYN VSR SQ+ VP DY  DR YL+K
Sbjct:  402 AAGKNKKGKKSAIGAWVPYRDKRGRGIFYYNRVSRVSQFEVPEDYEKDRRYLMK 455
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BLAST of mRNA_P-wetherbeei_contig7939.3.1 vs. uniprot
Match: A0A835Z5D7_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5D7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.970e-10
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   79 GKWIPYRDKNGRGTFYYNTVSRASQWAVPPDYVVDRNYLVK 201
            G+W+PY DK GRG FYYN VSR ++W  PPDYV D+ Y++K
Sbjct:  551 GQWVPYIDKQGRGIFYYNKVSRETRWEQPPDYVQDKAYVMK 591
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BLAST of mRNA_P-wetherbeei_contig7939.3.1 vs. uniprot
Match: A0A482V1I5_9ARCH (WW domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V1I5_9ARCH)

HSP 1 Score: 54.3 bits (129), Expect = 6.600e-8
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 EALRRRLKEAEAGAASDARRRELATLGKWIPYRDKNGRGTFYYNTVSRASQWAVPPDYVVDRNYLVK 201
            EA +R+ KE+E        R        W+ YRDK  R  F+YNT++R SQ+ VP D+V DR  LV+
Sbjct:   26 EAEKRKNKESEVETKISPLRGAKLVKDAWVEYRDKKTRKNFFYNTITRKSQFEVPKDFVADRTRLVR 92
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BLAST of mRNA_P-wetherbeei_contig7939.3.1 vs. uniprot
Match: A0A7S2BBB5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BBB5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.400e-6
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 1 
Query:   82 KWIPYRDKNGRGTFYYNTVSRASQWAVPPDYVVDRNYLV 198
            +W+PY D   R  FYYN VSR SQW +P DYV D  Y++
Sbjct:  191 QWVPYTDTKSRKRFYYNKVSRESQWDMPDDYVRDPMYVI 229
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BLAST of mRNA_P-wetherbeei_contig7939.3.1 vs. uniprot
Match: F0Y8C8_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8C8_AURAN)

HSP 1 Score: 48.9 bits (115), Expect = 5.530e-5
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:   37 GAASDARRRELATLGKWIPYRDKNGRGTFYYNTVSRASQW 156
            G     R  + + +G+W PYRDK GRG FYYN VSR SQ+
Sbjct: 1488 GKKGGGRGAKASAVGEWRPYRDKRGRGIFYYNRVSRVSQF 1527
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7939.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A8J2X0P4_9STRA4.580e-1255.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835Z5D7_9STRA1.970e-1060.98Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A482V1I5_9ARCH6.600e-841.79WW domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S2BBB5_9STRA2.400e-653.85Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y8C8_AURAN5.530e-552.50JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7939contigP-wetherbeei_contig7939:2732..2932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1C5
PFAMsAnk_2
Model size201
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.73e-10
EggNOG OGsCOG0666@1|root,KOG0510@2759|Eukaryota
Descriptiontemperature-gated cation channel activity
Cds size201
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.3792977-CDS-P-wetherbeei_contig7939:2731..29321683187010.3792977-CDS-P-wetherbeei_contig7939:2731..2932Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7939 2732..2932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7939.3.1prot_P-wetherbeei_contig7939.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7939 2732..2932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7939.3.1

>prot_P-wetherbeei_contig7939.3.1 ID=prot_P-wetherbeei_contig7939.3.1|Name=mRNA_P-wetherbeei_contig7939.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
EALRRRLKEAEAGAASDARRRELATLGKWIPYRDKNGRGTFYYNTVSRAS
QWAVPPDYVVDRNYLVK
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mRNA from alignment at P-wetherbeei_contig7939:2732..2932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7939.3.1 ID=mRNA_P-wetherbeei_contig7939.3.1|Name=mRNA_P-wetherbeei_contig7939.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig7939:2732..2932+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCCTCCGCAGGCGGCTCAAGGAAGCCGAAGCCGGCGCCGCCAGCGA
TGCGCGTCGCCGTGAGCTGGCGACGCTCGGCAAGTGGATACCGTACCGCG
ACAAAAACGGTCGCGGAACGTTTTACTACAACACGGTCAGCCGGGCATCG
CAGTGGGCGGTGCCACCGGACTACGTTGTCGACCGGAACTACCTCGTCAA
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7939:2732..2932+

>mRNA_P-wetherbeei_contig7939.3.1 ID=mRNA_P-wetherbeei_contig7939.3.1|Name=mRNA_P-wetherbeei_contig7939.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig7939:2732..2932+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCCCTCCGCAGGCGGCTCAAGGAAGCCGAAGCCGGCGCCGCCAGCGA
TGCGCGTCGCCGTGAGCTGGCGACGCTCGGCAAGTGGATACCGTACCGCG
ACAAAAACGGTCGCGGAACGTTTTACTACAACACGGTCAGCCGGGCATCG
CAGTGGGCGGTGCCACCGGACTACGTTGTCGACCGGAACTACCTCGTCAA
G
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