mRNA_P-wetherbeei_contig7939.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7939.2.1
Unique NamemRNA_P-wetherbeei_contig7939.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7939.2.1 vs. uniprot
Match: A0A835Z5D7_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5D7_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.850e-62
Identity = 138/298 (46.31%), Postives = 170/298 (57.05%), Query Frame = 1
Query:    1 GDMRRLREAVTLKWRDINRAYPGAPYYGDTLLHVVCREGYLPMLRFMLSPTSRTIYETVELSVNATNVRGRTPLLLCFTPPHFTFSARAHGLALDPAAGLARAAAPSPEAIAAAGASGPEGLDWAAPGDPSDRQEMVRLLVEDGDADPDLQDFLGLSAVHYAAIWGWDATFRTLVDAGADAAAVTADGESCLHLAAAHGHVAAALSALDAVPRLLDCTDVAGRRAVHRAIVAGAAGSAGAGEVLALLGDEGADVNAPDFEGQTPLRLACEANVAALVLALLDAGAEAEEECLELLHGE 894
            GDMR+LRE V  +W+D+NR Y G  + GDTLLHVVCREGY  M  FML P +++ +E V L VNATN +GRTPL+LCFTPP  T  A+A+GL  DP  G  R  A  PE +  A        DW  PGD   R+ +V  L+  G A  +  D    + +HYAA+ GW  +   L+ AGAD    +  GE+ LHLA    H AAA S L A P L+D +D  G RA+H AI           E L LL D  AD+NAPD+ G TPL+LAC     A V ALLD     E   L LL G+
Sbjct:  205 GDMRKLRECVIQRWKDVNRPYQGV-FGGDTLLHVVCREGYDGMAVFMLDPATKSAFEQVTLDVNATNKKGRTPLMLCFTPPSLTLVAKANGLEQDPEIGCGRPKAKRPEELTVA-------ADWLPPGDREARERLVERLLAAG-ARVNALDLHDYTCLHYAAMLGWVGSVEALLKAGADPGHKSVTGETALHLAIERRHGAAAESLLLASPSLVDESDRDGTRAIHTAIRCRCGR-----EFLELLADHKADMNAPDYSGVTPLQLACSLQDHAAVSALLDLKVVRESPALALLKGD 488          
BLAST of mRNA_P-wetherbeei_contig7939.2.1 vs. uniprot
Match: A0A6H5K2B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B1_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 5.200e-54
Identity = 124/286 (43.36%), Postives = 161/286 (56.29%), Query Frame = 1
Query:    1 GDMRRLREAVTLKWRDINRAYPGAPYYGDTLLHVVCREGYLPMLRFMLSPTSRTIYETVELSVNATNVRGRTPLLLCFTPPHFTFSARAHGLALDPAAGLARAAAPSPEAIAAAGASGPEGLDWAAPGDPSDRQEMVRLLVEDGDADPDLQDFLGLSAVHYAAIWGWDATFRTLVDAGADAAAVTADGESCLHLAAAHGHVAAALSALDAVPRLLDCTDVAGRRAVHRAIVAGAAGSAGAGEVLALLGDEGADVNAPDFEGQTPLRLACEANVAALVLALLDAGAE 858
            GDMR LRE V +KW+DINR+Y G P  G+T+LH VCREGYL  L+FML P S++I+ET  +  N  N R RT L+LCFT PHFT  A+  GL  D   GL     P P     A        DW  PG  +DR+EMVR+LVED  AD ++ D    S +HYA+I GW+ T   L++ G D       GE+ LH A +  H  AA   L     L++  D  G RA+H A+        G  E++ LL D  AD+N+P++   TPL +AC+     +V  LLD  AE
Sbjct:   91 GDMRLLRETVIMKWKDINRSYQG-PLLGETVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNIPNKRKRTALMLCFTSPHFTEIAKHFGLEQDAETGLG---VPRPRRPDTA-------QDWMKPGTRADREEMVRILVEDLKADVNVLDMHDYSLLHYASISGWEGTIDLLLEHGIDPRQTCMTGETALHFAVSLRHGEAAEILLKRSQDLVNEADKDGDRAIHLAV------QNGDHEIVDLLVDYQADINSPNYRRVTPLAVACKRQDWQMVNHLLDKKAE 359          
BLAST of mRNA_P-wetherbeei_contig7939.2.1 vs. uniprot
Match: F0Y8C8_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8C8_AURAN)

HSP 1 Score: 130 bits (328), Expect = 3.330e-30
Identity = 101/305 (33.11%), Postives = 148/305 (48.52%), Query Frame = 1
Query:    1 GDMRRLREAVTLKWRDINRAYPGAPYYGDTLLHVVCREGYLPMLRFMLSPTSRTIYETVELSVNATNVRGRTPLLLCFTPPHFTFSARAHGLALDPAAGLARAAAPSPEAIAAAGASGPEGLDWAAPGDPSDRQEMVRLLVEDGDADPDLQDFLGLSAVHYAAIWGWDATFRTLVDAGADAAA----VTADGESCLHLAAAHGHVAAALSALDAVPRLLDCTDVAGRRAVHRAIVAGAAGSAGAGEVLALLGDEGADVNAPDFEGQTPLRLACEANVAALVLALLDAGAEAEEECLELLHGEAAQ 903
            G+ R LRE +   +  +N+ Y GA +  DTLLH+VCREGYL M+ FM+ P + + ++T E+  NA N + RTPL + FTPP  T+ AR  G+  D   GL +   P    I +         DW  PG    R +++ LL++ G A+    D+   S +HYA +WGW  T   L++ GAD  A        G++ L  A    HV      L      ++  +V G  A+    + G        E +  L + GA+VNA  +   +PL+ AC      ++  LLD  A       ELL G+A Q
Sbjct: 1178 GNFRELREIIIGHFAQVNKRY-GA-WDNDTLLHIVCREGYLRMVEFMVDPKNVSQFDTTEIDFNAENNKWRTPLHVVFTPPQETYCARKIGVHDD---GLPKGEKPEGVTIDS---------DWIRPGTERHRMQVIELLIDKG-ANIHQMDYHDHSPLHYACVWGWVDTVELLLEKGADPRADPETSNIAGQNALMAATEFKHVDVVDLLLSETQISIESKNVDGETALIYGALTGDV------ETVECLCEFGANVNAESYSKDSPLKRACRNQDVPMIHKLLDFAATRRPSAFELLEGDAKQ 1461          
BLAST of mRNA_P-wetherbeei_contig7939.2.1 vs. uniprot
Match: D7G1C5_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C5_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.300e-26
Identity = 78/200 (39.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query:    1 GDMRRLREAVTLKWRDINRAYPGAPYYGDTLLHVVCREGYLPMLRFMLSPTSRTIYETVELSVNATNVRGRTPLLLCFTPPHFTFSARAHGLALDPAAGLARAAAPSPEAIAAAGASGPEGLDWAAPGDPSDRQEMVRLLVEDGDADPDLQDFLGLSAVHYAAIWGWDATFRTLVDAGADAA-AVTADGESCLHLAAAHG 597
            GDMR LRE V +KW+DINR+Y G P  G+T+LH VCREGYL  L+FML P S++I+ET  +  N  N R RT L+LCFT PHFT   +  GL  D   GL     P P                     P   Q  + LL+E G  DP      G +A+H+A           L+    D       DG+  +HLA  +G
Sbjct:   91 GDMRLLRETVIMKWKDINRSYQG-PLLGETVLHRVCREGYLGALKFMLDPNSKSIFETETVDPNILNKRKRTALMLCFTSPHFTEITKNFGLEQDTETGLG---VPRPRR-------------------PDTAQGTIDLLLEHG-IDPRQTCMTGETALHFAVSLRHGEAAEILLKRSQDLVNEADKDGDRAIHLAVQNG 266          
BLAST of mRNA_P-wetherbeei_contig7939.2.1 vs. uniprot
Match: F0YPL7_AURAN (JmjC domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPL7_AURAN)

HSP 1 Score: 113 bits (282), Expect = 3.480e-24
Identity = 69/180 (38.33%), Postives = 100/180 (55.56%), Query Frame = 1
Query:    1 GDMRRLREAVTLKWRDINRAYPGAPYYGDTLLHVVCREGYLPMLRFMLSPTSRTIYETVELSVNATNVRGRTPLLLCFTPPHFTFSARAHGLALDPAAGLARAAAPSPEAIAAAGASGPEGLDWAAPGDPSDRQEMVRLLVEDGDADPDLQDFLGLSAVHYAAIWGWDATFRTLVDAGAD 540
            G+ R LRE +   +  +N+ Y GA +  DTLLH+VCREGYL M+ FM+ P + + ++T E+  NA N + RTPL + FTPP  T+ AR  G+  D   GL +   P    I +         DW  PG    R +++ LL++ G A+    D+   S +HYA +WGW  T   L++ GAD
Sbjct:  398 GNFRELREIIIGHFAQVNKRY-GA-WDNDTLLHIVCREGYLRMVEFMVDPKNVSQFDTTEIDFNAENNKWRTPLHVVFTPPQETYCARKIGVHDD---GLPKGEKPEGVTIDS---------DWIRPGTERHRMQVIELLIDKG-ANIHQMDYHDHSPLHYACVWGWVDTVELLLEKGAD 562          
BLAST of mRNA_P-wetherbeei_contig7939.2.1 vs. uniprot
Match: A0A7S3JPN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPN4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.000e-7
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 GDMRRLREAVTLKWRDINRAYPGAPYYGDTLLHVVCREGYLPMLRFMLSPTSRTIYETVELSVNA 195
            G+MR LRE V      IN+ Y G  + GDTLLH++CREGY  M+ FM+   + + +++ E++ NA
Sbjct:   70 GNMRLLREQVVAHSTQINKKYFGG-WGGDTLLHIICREGYARMVEFMMDSNNISQFDSTEINYNA 133          
BLAST of mRNA_P-wetherbeei_contig7939.2.1 vs. uniprot
Match: A0A7S3M4K0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M4K0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.240e-6
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 GDMRRLREAVTLKWRDINRAYPGAPYYGDTLLHVVCREGYLPMLRFMLSPTSRTIYETVE 180
            G+M+ LR  V + +++INR Y    + G+TLLH+VC+EGY  ML+FM +P +R+  +T E
Sbjct:   84 GNMKELRNQVVVYFKNINRKYTDH-HLGNTLLHMVCQEGYYSMLQFMFNPANRSDLDTNE 142          
BLAST of mRNA_P-wetherbeei_contig7939.2.1 vs. uniprot
Match: A0A6U0I3R1_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A6U0I3R1_MICPS)

HSP 1 Score: 54.7 bits (130), Expect = 5.970e-5
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 1
Query:  463 GLSAVHYAAIWGWDATFRTLVDAGADAAAVTADGESCLHLAAAHGHVAAALSALDAVPRLLDCTDVAGRRAVHRAIVAGAAGSAGAGEVLALLGDEGADVNAPDFEGQTPLRLACEANVAALVLALLDAGAEA 861
            G + +H+AA  G D     L+  GAD   V ++G++ L LAA+ GH ++  + +      ++  D  G  A+H A  A         E L+ L   GAD +A +  G TPL LA  A    +V+ALLDAGA A
Sbjct:   42 GATPLHHAAEEGDDVVIEALLAIGADVDEVDSEGQTALMLAASWGHPSSVNALIRVGNASINLKDEGGDTALHEAARANEL------ETLSQLISLGADKDARNKLGATPLLLASHAGHKRIVVALLDAGAAA 168          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7939.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835Z5D7_9STRA1.850e-6246.31Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A6H5K2B1_9PHAE5.200e-5443.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y8C8_AURAN3.330e-3033.11JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
D7G1C5_ECTSI2.300e-2639.00Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
F0YPL7_AURAN3.480e-2438.33JmjC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S3JPN4_9STRA4.000e-743.08Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A7S3M4K0_9STRA1.240e-645.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6U0I3R1_MICPS5.970e-535.34Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7939contigP-wetherbeei_contig7939:1006..2403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009036723.1
PFAMsAnk_2,Ank_4,SOCS_box
Model size909
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.91e-30
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-00_005590.1
Descriptionspectrin binding
Cds size903
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.327419-UTR-P-wetherbeei_contig7939:1005..10111683187010.327419-UTR-P-wetherbeei_contig7939:1005..1011Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7939 1006..1011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.3382685-CDS-P-wetherbeei_contig7939:1011..16801683187010.3382685-CDS-P-wetherbeei_contig7939:1011..1680Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7939 1012..1680 +
1683187010.35424-CDS-P-wetherbeei_contig7939:2169..24031683187010.35424-CDS-P-wetherbeei_contig7939:2169..2403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7939 2170..2403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7939.2.1prot_P-wetherbeei_contig7939.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7939 1012..2403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7939.2.1

>prot_P-wetherbeei_contig7939.2.1 ID=prot_P-wetherbeei_contig7939.2.1|Name=mRNA_P-wetherbeei_contig7939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=301bp
MRRLREAVTLKWRDINRAYPGAPYYGDTLLHVVCREGYLPMLRFMLSPTS
RTIYETVELSVNATNVRGRTPLLLCFTPPHFTFSARAHGLALDPAAGLAR
AAAPSPEAIAAAGASGPEGLDWAAPGDPSDRQEMVRLLVEDGDADPDLQD
FLGLSAVHYAAIWGWDATFRTLVDAGADAAAVTADGESCLHLAAAHGHVA
AALSALDAVPRLLDCTDVAGRRAVHRAIVAGAAGSAGAGEVLALLGDEGA
DVNAPDFEGQTPLRLACEANVAALVLALLDAGAEAEEECLELLHGEAAQQ
V
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mRNA from alignment at P-wetherbeei_contig7939:1006..2403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7939.2.1 ID=mRNA_P-wetherbeei_contig7939.2.1|Name=mRNA_P-wetherbeei_contig7939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1398bp|location=Sequence derived from alignment at P-wetherbeei_contig7939:1006..2403+ (Phaeothamnion wetherbeei SAG_119_79)
GGAGACATGCGCCGGCTGCGCGAGGCGGTTACGCTCAAGTGGCGGGACAT CAACCGCGCCTACCCGGGTGCGCCGTACTACGGCGACACGCTCTTGCACG TCGTCTGCCGGGAAGGTTATCTGCCGATGCTGCGCTTCATGCTGTCGCCG ACCTCCCGTACGATCTACGAGACCGTCGAGCTGTCTGTCAATGCCACCAA TGTGCGCGGCCGGACGCCGCTGCTCCTCTGCTTCACGCCCCCGCATTTCA CCTTTTCTGCCCGCGCCCACGGACTGGCGCTGGACCCCGCGGCCGGACTG GCGCGCGCTGCCGCCCCGTCCCCCGAAGCAATTGCCGCTGCCGGCGCGTC GGGGCCCGAAGGACTCGACTGGGCGGCGCCGGGGGATCCTTCGGACCGCC AGGAGATGGTTCGGCTCTTGGTCGAAGACGGCGACGCCGACCCGGACCTG CAGGACTTTCTGGGACTCTCGGCGGTGCACTACGCGGCGATCTGGGGCTG GGATGCGACCTTCAGAACATTGGTGGACGCCGGCGCGGACGCCGCGGCCG TGACAGCGGACGGGGAGTCGTGCTTGCACTTGGCCGCGGCGCACGGACAC GTCGCGGCTGCGCTGTCGGCGCTGGACGCGGTGCCGCGGCTGCTCGACTG CACCGACGTGGCCGGCCGCCGCGCGGTGAGTTATTTTCTTTTTGTCTGTT TTTGGCATCGGCTGTGGTTCGAGGTGCAGTTAATTCCAGACTCTTGTTAG GGAAGGATGCTGGAGGCTCGACAGGTCGGAGCCAAGAAAAGCGAGTGCAA AGTGAGTATTGCTGGCTACGCGAGGTTTCCTGACCAGAATGGTAATCAGG CTGCTGTGGTGAAAGTGTGCGTTGTTGAGAGTTTGGCCACAGACACCCGA CATACGTCACCCAGTGCAACCACAGTCACCACAACCATTGCTGCCACCGC TGCCATTAATGCGGCATCAACAAACCCACCGCGGCGACCGTTACTACGAC TACTTACAACCCCCCCCCCCCCCAAAAAAACCACCCCCCCCCCCCCAGGG GGGCCCCGCCCACCCCGGGCGGGCGCGCCGGCGCGCCGGCCNNNNNNNNN NCACCAATACCACCCACACACACACCCCCCCCCCCCCCAAAAAAACACAC ACAATCCCACATAGGTGCACCGCGCCATCGTGGCCGGCGCGGCGGGCAGC GCCGGCGCCGGAGAGGTCCTGGCGTTGCTCGGCGACGAGGGCGCCGACGT GAACGCGCCCGACTTCGAGGGGCAGACACCGCTGCGGCTGGCGTGTGAAG CGAACGTGGCGGCGCTGGTTCTGGCGCTGCTTGACGCCGGGGCCGAGGCC GAGGAGGAGTGCCTGGAGCTGCTGCACGGGGAGGCCGCCCAGCAAGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7939:1006..2403+

>mRNA_P-wetherbeei_contig7939.2.1 ID=mRNA_P-wetherbeei_contig7939.2.1|Name=mRNA_P-wetherbeei_contig7939.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=903bp|location=Sequence derived from alignment at P-wetherbeei_contig7939:1006..2403+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCGGCTGCGCGAGGCGGTTACGCTCAAGTGGCGGGACATCAACCG
CGCCTACCCGGGTGCGCCGTACTACGGCGACACGCTCTTGCACGTCGTCT
GCCGGGAAGGTTATCTGCCGATGCTGCGCTTCATGCTGTCGCCGACCTCC
CGTACGATCTACGAGACCGTCGAGCTGTCTGTCAATGCCACCAATGTGCG
CGGCCGGACGCCGCTGCTCCTCTGCTTCACGCCCCCGCATTTCACCTTTT
CTGCCCGCGCCCACGGACTGGCGCTGGACCCCGCGGCCGGACTGGCGCGC
GCTGCCGCCCCGTCCCCCGAAGCAATTGCCGCTGCCGGCGCGTCGGGGCC
CGAAGGACTCGACTGGGCGGCGCCGGGGGATCCTTCGGACCGCCAGGAGA
TGGTTCGGCTCTTGGTCGAAGACGGCGACGCCGACCCGGACCTGCAGGAC
TTTCTGGGACTCTCGGCGGTGCACTACGCGGCGATCTGGGGCTGGGATGC
GACCTTCAGAACATTGGTGGACGCCGGCGCGGACGCCGCGGCCGTGACAG
CGGACGGGGAGTCGTGCTTGCACTTGGCCGCGGCGCACGGACACGTCGCG
GCTGCGCTGTCGGCGCTGGACGCGGTGCCGCGGCTGCTCGACTGCACCGA
CGTGGCCGGCCGCCGCGCGGTGCACCGCGCCATCGTGGCCGGCGCGGCGG
GCAGCGCCGGCGCCGGAGAGGTCCTGGCGTTGCTCGGCGACGAGGGCGCC
GACGTGAACGCGCCCGACTTCGAGGGGCAGACACCGCTGCGGCTGGCGTG
TGAAGCGAACGTGGCGGCGCTGGTTCTGGCGCTGCTTGACGCCGGGGCCG
AGGCCGAGGAGGAGTGCCTGGAGCTGCTGCACGGGGAGGCCGCCCAGCAA
GTG
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