mRNA_P-wetherbeei_contig7939.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7939.1.1
Unique NamemRNA_P-wetherbeei_contig7939.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7939.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7939contigP-wetherbeei_contig7939:412..1001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size472
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.2794452-UTR-P-wetherbeei_contig7939:411..5581683187010.2794452-UTR-P-wetherbeei_contig7939:411..558Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7939 412..558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.2878036-CDS-P-wetherbeei_contig7939:558..6911683187010.2878036-CDS-P-wetherbeei_contig7939:558..691Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7939 559..691 +
1683187010.296132-CDS-P-wetherbeei_contig7939:810..10011683187010.296132-CDS-P-wetherbeei_contig7939:810..1001Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7939 811..1001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7939.1.1prot_P-wetherbeei_contig7939.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7939 559..1001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7939.1.1

>prot_P-wetherbeei_contig7939.1.1 ID=prot_P-wetherbeei_contig7939.1.1|Name=mRNA_P-wetherbeei_contig7939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MQHGRRRLFPGLWEPPLGVRRQREARGGEEHGEASKQLSERLYAGVGGPR
QLGAAGDGHALRPPLLEAARARRRRAPRRRRRRQRRRRRWCRCRPRCQQA
DAHPRCRA
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mRNA from alignment at P-wetherbeei_contig7939:412..1001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7939.1.1 ID=mRNA_P-wetherbeei_contig7939.1.1|Name=mRNA_P-wetherbeei_contig7939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=590bp|location=Sequence derived from alignment at P-wetherbeei_contig7939:412..1001+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGGGGGACCTCTGCCCTTTCACTGGCATGCTTGCCGAGAACGATCCTA
ATGAAGTGCCATTGGAGGGGTCGTCGTTTTAGTTCATAGTAACTACTCGC
AGCAAAGAGAACTGGATAATTGCTCAATCTTCTTTCTACAAAAGAGAATG
CAGCATGGGCGCCGCCGCCTCTTTCCTGGGCTTTGGGAACCACCGCTTGG
AGTTCGAAGGCAGCGGGAAGCGAGAGGTGGCGAAGAGCATGGAGAAGCGT
CGAAGCAACTCTCTGAAAGACTTTACGCAGGTACTTTGCTTTCGTCGTCT
CATCTCATGCGTAAGAGTATTGTAAGGAATGCATGTTTCGTTTCTCTCTT
TTTCTGAAACCGCGATCATCCGCCTACACCCTTTCCCAACGAACTACAGG
AGTGGGTGGGCCTCGACAGCTGGGAGCAGCAGGAGACGGCCATGCTCTGC
GCCCGCCGTTACTGGAAGCGGCTCGAGCTCGAAGGCGCCGAGCGCCGCGG
CGGCGACGACGACGACAGCGACGGCGACGACGGTGGTGCCGATGCCGACC
TCGTTGTCAACAAGCTGATGCGCATCCCCGCTGCCGTGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7939:412..1001+

>mRNA_P-wetherbeei_contig7939.1.1 ID=mRNA_P-wetherbeei_contig7939.1.1|Name=mRNA_P-wetherbeei_contig7939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig7939:412..1001+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCATGGGCGCCGCCGCCTCTTTCCTGGGCTTTGGGAACCACCGCT
TGGAGTTCGAAGGCAGCGGGAAGCGAGAGGTGGCGAAGAGCATGGAGAAG
CGTCGAAGCAACTCTCTGAAAGACTTTACGCAGGAGTGGGTGGGCCTCGA
CAGCTGGGAGCAGCAGGAGACGGCCATGCTCTGCGCCCGCCGTTACTGGA
AGCGGCTCGAGCTCGAAGGCGCCGAGCGCCGCGGCGGCGACGACGACGAC
AGCGACGGCGACGACGGTGGTGCCGATGCCGACCTCGTTGTCAACAAGCT
GATGCGCATCCCCGCTGCCGTGCA
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