mRNA_P-wetherbeei_contig7936.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7936.1.1
Unique NamemRNA_P-wetherbeei_contig7936.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7936.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7936contigP-wetherbeei_contig7936:776..1836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1063
Hectar predicted targeting categoryother localisation
Exons1
Cds size1038
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.0359354-CDS-P-wetherbeei_contig7936:775..18131683187010.0359354-CDS-P-wetherbeei_contig7936:775..1813Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7936 776..1813 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187010.0479212-UTR-P-wetherbeei_contig7936:1813..18361683187010.0479212-UTR-P-wetherbeei_contig7936:1813..1836Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7936 1814..1836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7936.1.1prot_P-wetherbeei_contig7936.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7936 776..1813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7936.1.1

>prot_P-wetherbeei_contig7936.1.1 ID=prot_P-wetherbeei_contig7936.1.1|Name=mRNA_P-wetherbeei_contig7936.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=346bp
MEDGERTAGQAAPAARAPVERNGKVVKILRGFPVRMTSSQPPAWDLPVLN
STANADSDSPPLLEIDRPEDRGRGVPWTVGQVGLRRTIIAFPGKRRPLSY
QRGGSPARREGFGIAVAQAGQRLLETAPNGNVYVAARPIAGLPAGQHVAT
AVAAKPRRDTSSNALWQRRSAMAFRRPGVLAGSGAPRASRQLSMDGRGGM
SADELIGLDDSGTSAPEVLPRTGAEYSAAASTAPPPLAAVATTIAVTVPL
PAPASGRAALLRRGVDAGRTLRSSSAPRPATVAAPASGRIGHRAAASIAA
AGMPAQRPPPSPSPPPLQPSRAWQGVPHACAPHIPAELMPERDRQR
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mRNA from alignment at P-wetherbeei_contig7936:776..1836-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7936.1.1 ID=mRNA_P-wetherbeei_contig7936.1.1|Name=mRNA_P-wetherbeei_contig7936.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1061bp|location=Sequence derived from alignment at P-wetherbeei_contig7936:776..1836- (Phaeothamnion wetherbeei SAG_119_79)
ACCCCGTCGGCAATAACGACGAGATGGAAGATGGAGAAAGAACCGCAGGT
CAGGCGGCCCCGGCTGCGCGTGCACCCGTGGAAAGAAACGGGAAGGTCGT
AAAGATCCTTCGAGGCTTTCCTGTTCGAATGACTTCCTCGCAGCCACCGG
CCTGGGATCTTCCTGTGCTCAACAGCACCGCGAATGCTGACTCTGACAGT
CCGCCGCTGCTCGAGATTGATCGGCCAGAGGACCGCGGCAGAGGTGTTCC
TTGGACCGTGGGTCAAGTGGGATTGCGTCGCACGATCATTGCGTTTCCAG
GGAAAAGGCGACCGCTCTCTTACCAACGCGGCGGCAGTCCTGCAAGGCGT
GAGGGCTTCGGGATTGCCGTCGCTCAGGCCGGTCAGCGTCTTTTGGAGAC
CGCTCCGAACGGCAATGTCTATGTCGCCGCACGGCCAATTGCAGGCTTGC
CCGCGGGACAGCACGTTGCAACCGCTGTCGCTGCGAAGCCCCGACGGGAT
ACTTCGAGCAACGCGCTGTGGCAGCGTCGATCGGCCATGGCATTTCGAAG
GCCGGGCGTGTTGGCCGGCAGCGGGGCGCCGCGCGCGTCGCGTCAACTAT
CGATGGACGGCAGGGGCGGCATGTCCGCTGACGAGCTCATCGGCCTCGAC
GACAGCGGCACGAGCGCTCCGGAAGTCCTGCCTCGAACCGGTGCCGAGTA
TTCTGCCGCTGCCAGTACCGCGCCCCCCCCCCTGGCTGCCGTCGCTACCA
CCATCGCCGTCACTGTTCCTTTGCCAGCTCCAGCTTCGGGTCGAGCTGCG
TTGCTACGGCGCGGCGTAGACGCCGGCCGCACGCTGAGAAGTTCCTCCGC
GCCGAGGCCGGCAACCGTGGCGGCGCCGGCATCGGGCAGGATTGGCCACC
GCGCCGCAGCTTCCATCGCCGCGGCGGGAATGCCAGCGCAGCGGCCGCCG
CCATCGCCCTCTCCGCCGCCGCTGCAGCCTTCCCGCGCATGGCAGGGCGT
GCCCCACGCGTGTGCCCCACACATACCAGCTGAGCTGATGCCGGAGCGGG
ACCGGCAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7936:776..1836-

>mRNA_P-wetherbeei_contig7936.1.1 ID=mRNA_P-wetherbeei_contig7936.1.1|Name=mRNA_P-wetherbeei_contig7936.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1038bp|location=Sequence derived from alignment at P-wetherbeei_contig7936:776..1836- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGATGGAGAAAGAACCGCAGGTCAGGCGGCCCCGGCTGCGCGTGC
ACCCGTGGAAAGAAACGGGAAGGTCGTAAAGATCCTTCGAGGCTTTCCTG
TTCGAATGACTTCCTCGCAGCCACCGGCCTGGGATCTTCCTGTGCTCAAC
AGCACCGCGAATGCTGACTCTGACAGTCCGCCGCTGCTCGAGATTGATCG
GCCAGAGGACCGCGGCAGAGGTGTTCCTTGGACCGTGGGTCAAGTGGGAT
TGCGTCGCACGATCATTGCGTTTCCAGGGAAAAGGCGACCGCTCTCTTAC
CAACGCGGCGGCAGTCCTGCAAGGCGTGAGGGCTTCGGGATTGCCGTCGC
TCAGGCCGGTCAGCGTCTTTTGGAGACCGCTCCGAACGGCAATGTCTATG
TCGCCGCACGGCCAATTGCAGGCTTGCCCGCGGGACAGCACGTTGCAACC
GCTGTCGCTGCGAAGCCCCGACGGGATACTTCGAGCAACGCGCTGTGGCA
GCGTCGATCGGCCATGGCATTTCGAAGGCCGGGCGTGTTGGCCGGCAGCG
GGGCGCCGCGCGCGTCGCGTCAACTATCGATGGACGGCAGGGGCGGCATG
TCCGCTGACGAGCTCATCGGCCTCGACGACAGCGGCACGAGCGCTCCGGA
AGTCCTGCCTCGAACCGGTGCCGAGTATTCTGCCGCTGCCAGTACCGCGC
CCCCCCCCCTGGCTGCCGTCGCTACCACCATCGCCGTCACTGTTCCTTTG
CCAGCTCCAGCTTCGGGTCGAGCTGCGTTGCTACGGCGCGGCGTAGACGC
CGGCCGCACGCTGAGAAGTTCCTCCGCGCCGAGGCCGGCAACCGTGGCGG
CGCCGGCATCGGGCAGGATTGGCCACCGCGCCGCAGCTTCCATCGCCGCG
GCGGGAATGCCAGCGCAGCGGCCGCCGCCATCGCCCTCTCCGCCGCCGCT
GCAGCCTTCCCGCGCATGGCAGGGCGTGCCCCACGCGTGTGCCCCACACA
TACCAGCTGAGCTGATGCCGGAGCGGGACCGGCAGCGG
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