mRNA_P-wetherbeei_contig793.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig793.8.1
Unique NamemRNA_P-wetherbeei_contig793.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig793.8.1 vs. uniprot
Match: A0A662X375_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X375_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 8.350e-18
Identity = 61/182 (33.52%), Postives = 89/182 (48.90%), Query Frame = 1
Query:  103 VTTKIRSHLCSNLYT-ELEYTDSAAIAAFDKVDAVIIDGDFAGNLPWESRMRQVVLVVRACLLTEKCLVATGPGAAVVAFVCATGGPRMTVVNGGGAGTDMSVRLPXXXXXXXXXXXXXXXTRANASAAVNALPPPQR-RRPTA-------PPNVALDSVTGDYFLYDAATTAWIPAGNVGI 621
            +  K RS L + LY    E+ D   I  FD++D V +DGD A + PW   MR++ L+ + C++T KC   +G GAA++AFVC+TGG ++ V+N  G G+ +                            V  +PPP    RPT          NV LD  TGD+F++      W+P GN G+
Sbjct:   44 IVEKHRSSLDAFLYELHSEFADPHHITNFDQLDFVFVDGD-ASSSPWAPNMRKLALLAKMCMMTGKCFFGSGVGAALLAFVCSTGGEQLRVMNNEGKGSLIDT--------------------------VQTIPPPSHVLRPTGFVSPRSEDNNVLLDIKTGDFFVFAEREHCWMPKGNTGL 198          
BLAST of mRNA_P-wetherbeei_contig793.8.1 vs. uniprot
Match: A0A5D6Y0F1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0F1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.840e-17
Identity = 54/158 (34.18%), Postives = 83/158 (52.53%), Query Frame = 1
Query:  154 EYTDSAAIAAFDKVDAVIIDGDFAGNLPWESRMRQVVLVVRACLLTEKCLVATGPGAAVVAFVCATGGPRMTVVNGGGAGT--DMSVRLPXXXXXXXXXXXXXXXTRANASAAVNALPPPQRRRPTAPPNVALDSVTGDYFLYDAATTAWIPAGNVGI 621
            E+     I  FD++D V++DGD A  LPW   MR++ L+ + C++T KC+ A+G GAA++A+VCATGG    V+N  G G+  D    +P                   +S+AV A             +V LD+ +GD+F++ A    W+P GN G+
Sbjct:   62 EFASPHCITNFDRLDFVLVDGD-ANALPWAPPMRKLALLTKMCMMTGKCVFASGLGAALLAYVCATGGEHFRVMNNDGKGSLIDDIQAIPPPPAAVSVAW--------TSSSAVRAQ------------DVLLDTKSGDFFVFTARERCWVPKGNTGL 198          
BLAST of mRNA_P-wetherbeei_contig793.8.1 vs. uniprot
Match: A0A1V9Z8X9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8X9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.510e-15
Identity = 58/183 (31.69%), Postives = 86/183 (46.99%), Query Frame = 1
Query:  103 VTTKIRSHLCSNLYTELEYT-DSAAIAAFDKVDAVIIDGDFAGNLPWESRMRQVVLVVRACLLTEKCLVATGPGAAVVAFVCATGGPRMTVVNGGGAGTDMSVRLPXXXXXXXXXXXXXXXTRANASAAVNALPPPQRRRPTAPPNVA---------LDSVTGDYFLYDAATTAWIPAGNVGI 621
            V  K R+ L   +Y     T D  +I  FD++D V +DGD +   PW  ++ ++ L+V+ C++T KCL   G GAA++A++C+TGG  +  VNG G GT +                           +V + PPP+         VA         LDS TGDYF ++     W P GN G+
Sbjct:   41 VIEKPRAELDEYIYEMHSNTADPESITRFDQLDFVFVDGDVSIP-PWAPQLHKLCLLVKMCMMTGKCLFGAGFGAAILAYLCSTGGELLQAVNGKGRGTPLR--------------------------SVQSAPPPENGAIVVTEGVAADINSHIVLLDSETGDYFNFNHRHNTWEPKGNTGL 196          
BLAST of mRNA_P-wetherbeei_contig793.8.1 vs. uniprot
Match: A0A0P1AJ67_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJ67_PLAHL)

HSP 1 Score: 84.3 bits (207), Expect = 2.660e-15
Identity = 54/178 (30.34%), Postives = 90/178 (50.56%), Query Frame = 1
Query:  103 VTTKIRSHLCSNLY-TELEYTDSAAIAAFDKVDAVIIDGDFAGNLPWESRMRQVVLVVRACLLTEKCLVATGPGAAVVAFVCATGGPRMTVVNGGGAGTDMS----VRLPXXXXXXXXXXXXXXXTRANASAAVNALPPPQRRRPTAPPNVALDSVTGDYFLYDAATTAWIPAGNVGI 621
            +  K RS+L S L+  + E+ D   I  FD++D V +DGD A   PW   MR+++++ + C++T KC   +G GA+++AF+CATGG  + ++N  G  + +     +R+P                 +  S  V ++    +  P     V LD  +GD+F+Y      W P GN G+
Sbjct:   44 IVEKHRSNLDSFLFEAQSEFADPDNITNFDQLDFVFVDGD-ANCSPWGPSMRKLLILTKMCMMTGKCFFGSGIGASLLAFICATGGKHLQILNNDGTKSMLERLQGIRIP-----------------SQESKRVGSVSNCDQATP-----VLLDINSGDFFVYVERELVWAPKGNTGL 198          
BLAST of mRNA_P-wetherbeei_contig793.8.1 vs. uniprot
Match: K3WKB6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKB6_GLOUD)

HSP 1 Score: 79.3 bits (194), Expect = 3.320e-13
Identity = 52/149 (34.90%), Postives = 75/149 (50.34%), Query Frame = 1
Query:  154 EYTDSAAIAAFDKVDAVIIDGDFAGNLPWESRMRQVVLVVRACLLTEKCLVATGPGAAVVAFVCATGGPRMTVVNGGGAGTDMSVRLPXXXXXXXXXXXXXXXTRANASAAVNALPP---PQRRRPTAPPNVALDSVTGDYFLYDAATT 591
            E+ +   I  FD +D V++DGD A  LPW   MR++ L+ + C++T KCL A+G GA ++AFVCATGG  + V+N  G G+ +                            + ALPP    Q    TA   V LD+ TGD+F ++   T
Sbjct:   62 EFANPQMITNFDLLDFVLVDGD-ANALPWAPAMRKLALLTKMCMMTGKCLFASGIGAGLLAFVCATGGEHLHVLNNDGKGSLIE-----------------------DIGQIPALPPRSMTQTLPRTAGTEVLLDTKTGDFFAFNYGAT 186          
BLAST of mRNA_P-wetherbeei_contig793.8.1 vs. uniprot
Match: A0A067C5P7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5P7_SAPPC)

HSP 1 Score: 75.5 bits (184), Expect = 6.440e-12
Identity = 55/173 (31.79%), Postives = 80/173 (46.24%), Query Frame = 1
Query:  118 RSHLCSNLYTELEYT-DSAAIAAFDKVDAVIIDGDFAGNLPWESRMRQVVLVVRACLLTEKCLVATGPGAAVVAFVCATGGPRMTVVNGGGAGTDMSVRLPXXXXXXXXXXXXXXXTRANASAAVNALPPPQRRRPTAPPN----VALDSVTGDYFLYDAATTAWIPAGNVGI 621
            RS L + +Y     T D  +I  FD++D V +DGD     PW   +R++  +++ C++T KC    G  AA++A++C+TGG  +  VNG G G  +                     R+  SA       PQ+R           V LDS TGDYF Y+     W P GN G+
Sbjct:   48 RSELDAFVYEMHSVTADPESITRFDQLDFVFVDGDVTMP-PWAPPLRKLCTLLKMCMMTGKCFFGAGVSAAILAYLCSTGGELLQAVNGHGRGCPL---------------------RSVPSAR------PQKRYCNCMDINSHIVLLDSETGDYFSYNVRHNTWEPKGNTGL 192          
BLAST of mRNA_P-wetherbeei_contig793.8.1 vs. uniprot
Match: J9IWK8_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IWK8_9SPIT)

HSP 1 Score: 62.8 bits (151), Expect = 1.270e-7
Identity = 45/152 (29.61%), Postives = 70/152 (46.05%), Query Frame = 1
Query:  184 FDKVDAVIIDGDFAGNLPWESRMRQVVLVVRACLLTEKCLVATGPGAAVVAFVCATGGPRMTVVNGGGAGTDMSVRLPXXXXXXXXXXXXXXXTRANASAAVNALPPPQRRRPTAPPNVALDSVTGDYFLYDAATTAWIPAGNVGIRRRWAV 639
            FD++D V I GD +G +PW++ + Q   + + C  T K +  +G G ++  + CAT      VVN    G  +S                    + +  A  N     Q+       NV LDS+TGDY++Y+     W+P+GNVG+    AV
Sbjct:    4 FDRLDMVFIIGD-SGTMPWQTSLDQARFLFKMCKKTGKSVFGSGLGYSLQVYFCATAMSEFYVVNNKQKGGALS-----------------QLNKVSHEAFSN-----QKE------NVFLDSLTGDYYIYNQEQQKWLPSGNVGMHYSRAV 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig793.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A662X375_9STRA8.350e-1833.52Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A5D6Y0F1_9STRA3.840e-1734.18Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9Z8X9_9STRA2.510e-1531.69Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A0P1AJ67_PLAHL2.660e-1530.34Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
K3WKB6_GLOUD3.320e-1334.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A067C5P7_SAPPC6.440e-1231.79Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
J9IWK8_9SPIT1.270e-729.61Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig793contigP-wetherbeei_contig793:7401..8734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI49437
Model size762
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.3e-18
EggNOG OGs28IDH@1|root,2QQQ8@2759|Eukaryota,3QC3A@4776|Peronosporales
Cds size762
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187009.7693062-CDS-P-wetherbeei_contig793:7400..79041683187009.7693062-CDS-P-wetherbeei_contig793:7400..7904Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig793 7401..7904 -
1683187009.7784836-CDS-P-wetherbeei_contig793:8162..82191683187009.7784836-CDS-P-wetherbeei_contig793:8162..8219Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig793 8163..8219 -
1683187009.7872016-CDS-P-wetherbeei_contig793:8470..85211683187009.7872016-CDS-P-wetherbeei_contig793:8470..8521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig793 8471..8521 -
1683187009.8017163-CDS-P-wetherbeei_contig793:8584..87341683187009.8017163-CDS-P-wetherbeei_contig793:8584..8734Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig793 8585..8734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig793.8.1prot_P-wetherbeei_contig793.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig793 7401..8734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig793.8.1

>prot_P-wetherbeei_contig793.8.1 ID=prot_P-wetherbeei_contig793.8.1|Name=mRNA_P-wetherbeei_contig793.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=254bp
GVQKRSCSALPSFMEVLFIDAFGQSVSARTQCHRVTTKIRSHLCSNLYTE
LEYTDSAAIAAFDKVDAVIIDGDFAGNLPWESRMRQVVLVVRACLLTEKC
LVATGPGAAVVAFVCATGGPRMTVVNGGGAGTDMSVRLPPPPPQPAPPPP
PPPDTRANASAAVNALPPPQRRRPTAPPNVALDSVTGDYFLYDAATTAWI
PAGNVGIRRRWAVIESKATYAALNGSVHPARTGAAVAGSGDGDGHRICCG
DGGD
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mRNA from alignment at P-wetherbeei_contig793:7401..8734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig793.8.1 ID=mRNA_P-wetherbeei_contig793.8.1|Name=mRNA_P-wetherbeei_contig793.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1334bp|location=Sequence derived from alignment at P-wetherbeei_contig793:7401..8734- (Phaeothamnion wetherbeei SAG_119_79)
GGCGTTCAAAAGAGGTCGTGCTCCGCCCTCCCTTCCTTCATGGAGGTTTT GTTCATTGATGCGTTTGGGCAGTCCGTATCTGCAAGGACGCAATGCCATC GCGTGACGACGAAGATTCGAAGTCACCTGTGCAGTAATTTGTACACGGAG GCGGTGCAACTCGTCGTGAGGAAGCCGGAAGAGTTAGCAGAGTTTTGCTA CAACGCGGAGCAGCTCGAATACACCGACTCTGCAGCGATTGCCGCGTTCG ACAAGGTCGACGCTGTGAGTGATCAATACCAAAGTCGTCAAACCCGCCTG GCAGCAATACTTCTTCGTCTAAGCGTTCTGAGAATCATGCAAATGAGCCT ATTTGCTTCAAAAAAGGACGCGCATAGGACTCTCATTCCACAGAACTTGT ATAAGACCACGAGACAAGGGAGAGTTCTCGCTGTTAAGTCATCAGCGAAG TACTACCAAGCAGGGGGCTTAAAATTGACGTTGAGCCCATTGACTCCTGT ATTTCATCGCCCCAGGTCATCATCGACGGCGACTTTGCAGGCAACCTCCC ATGGGAGAGCCGCATGCGGCAGGTGGGTGACTGCTTCAGCATTCAAAGCC ATTTCCAATGGCTGCCCTCGTGGTCCGGTTCTGAAGACAGTCAACAATCA ACGCTTTGGCCAGCTGTATGCTCTGAACGTTGAGATCCATGCTGGCGAAA GAAGAGCCCGCCACTTCTACCCCGAGAGTGCAAGCTGTCAAGAAGGCCAA CGAATCCCTGTCATTCACTACGTCTTCGAAATCTTTGATTCCAACGTTTC GCGCTTCTCCTTTCGCTCTGCGTCCGACAGGTTGTGCTCGTCGTGCGAGC CTGCCTCCTAACAGAAAAGTGCCTAGTGGCCACGGGGCCCGGTGCCGCCG TCGTCGCCTTTGTGTGCGCTACTGGTGGCCCCCGCATGACCGTCGTCAAC GGCGGTGGCGCCGGAACCGACATGTCAGTGCGACTGCCGCCGCCGCCACC GCAGCCGGCGCCGCCGCCACCGCCGCCGCCGGACACTCGGGCAAACGCCA GCGCGGCCGTTAACGCGCTTCCGCCACCGCAGCGGCGACGGCCGACGGCA CCACCAAATGTGGCGTTGGACAGCGTGACCGGCGACTACTTTTTGTATGA TGCGGCGACGACCGCATGGATTCCGGCAGGGAATGTCGGAATCCGACGCC GCTGGGCCGTCATAGAGTCGAAAGCGACGTATGCGGCTTTAAACGGCAGC GTGCATCCTGCAAGAACTGGTGCCGCCGTCGCCGGCAGCGGCGACGGCGA TGGCCACCGAATATGCTGCGGCGACGGCGGCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig793:7401..8734-

>mRNA_P-wetherbeei_contig793.8.1 ID=mRNA_P-wetherbeei_contig793.8.1|Name=mRNA_P-wetherbeei_contig793.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=762bp|location=Sequence derived from alignment at P-wetherbeei_contig793:7401..8734- (Phaeothamnion wetherbeei SAG_119_79)
GGCGTTCAAAAGAGGTCGTGCTCCGCCCTCCCTTCCTTCATGGAGGTTTT
GTTCATTGATGCGTTTGGGCAGTCCGTATCTGCAAGGACGCAATGCCATC
GCGTGACGACGAAGATTCGAAGTCACCTGTGCAGTAATTTGTACACGGAG
CTCGAATACACCGACTCTGCAGCGATTGCCGCGTTCGACAAGGTCGACGC
TGTCATCATCGACGGCGACTTTGCAGGCAACCTCCCATGGGAGAGCCGCA
TGCGGCAGGTTGTGCTCGTCGTGCGAGCCTGCCTCCTAACAGAAAAGTGC
CTAGTGGCCACGGGGCCCGGTGCCGCCGTCGTCGCCTTTGTGTGCGCTAC
TGGTGGCCCCCGCATGACCGTCGTCAACGGCGGTGGCGCCGGAACCGACA
TGTCAGTGCGACTGCCGCCGCCGCCACCGCAGCCGGCGCCGCCGCCACCG
CCGCCGCCGGACACTCGGGCAAACGCCAGCGCGGCCGTTAACGCGCTTCC
GCCACCGCAGCGGCGACGGCCGACGGCACCACCAAATGTGGCGTTGGACA
GCGTGACCGGCGACTACTTTTTGTATGATGCGGCGACGACCGCATGGATT
CCGGCAGGGAATGTCGGAATCCGACGCCGCTGGGCCGTCATAGAGTCGAA
AGCGACGTATGCGGCTTTAAACGGCAGCGTGCATCCTGCAAGAACTGGTG
CCGCCGTCGCCGGCAGCGGCGACGGCGATGGCCACCGAATATGCTGCGGC
GACGGCGGCGAT
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