mRNA_P-wetherbeei_contig7927.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7927.3.1
Unique NamemRNA_P-wetherbeei_contig7927.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Match: A0A7V9B4Q4_9ACTN (Methylmalonyl-CoA epimerase n=15 Tax=root TaxID=1 RepID=A0A7V9B4Q4_9ACTN)

HSP 1 Score: 241 bits (615), Expect = 2.680e-80
Identity = 119/133 (89.47%), Postives = 128/133 (96.24%), Query Frame = 1 
Query:    1 MLLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGATPIDTVPRPGSRGTTVAFIHPKGSFGTLIELVEE 399
            MLLTEIDHIAIAVRDLEAAIAYY+EAFGAEVHHRE+V+SDGVEEAL+KVADSYIQLTAATRPDSPIAKSIEKRGEGLHH+GYRV DCA AL +M+AAGATPID  PRPGSRGTTVAF+HPKGSFGTLIELV+E
Sbjct:    1 MLLTEIDHIAIAVRDLEAAIAYYREAFGAEVHHREVVDSDGVEEALIKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHIGYRVDDCAAALEAMVAAGATPIDAAPRPGSRGTTVAFVHPKGSFGTLIELVQE 133
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BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Match: A0A7K1ZAM4_9ACTN (Methylmalonyl-CoA epimerase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZAM4_9ACTN)

HSP 1 Score: 234 bits (597), Expect = 1.490e-77
Identity = 117/133 (87.97%), Postives = 125/133 (93.98%), Query Frame = 1 
Query:    1 MLLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGATPIDTVPRPGSRGTTVAFIHPKGSFGTLIELVEE 399
            M LTEIDHIAIAV DLEAAI YY+EAFGAEVHHREIV+SDGVEEAL+KVADSYIQLTAATRPDSPIAK +EKRGEGLHHVGYRV DCA++LA M+AAGATPIDT PRPGSRGTTVAFIHPKGS GTLIELV+E
Sbjct:    1 MQLTEIDHIAIAVNDLEAAITYYREAFGAEVHHREIVDSDGVEEALIKVADSYIQLTAATRPDSPIAKYLEKRGEGLHHVGYRVDDCAESLAQMVAAGATPIDTAPRPGSRGTTVAFIHPKGSLGTLIELVQE 133
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BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Match: A0A2E1WP16_9ACTN (Methylmalonyl-CoA epimerase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1WP16_9ACTN)

HSP 1 Score: 232 bits (591), Expect = 1.230e-76
Identity = 114/133 (85.71%), Postives = 125/133 (93.98%), Query Frame = 1 
Query:    1 MLLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGATPIDTVPRPGSRGTTVAFIHPKGSFGTLIELVEE 399
            M+LTEIDH+AIAV DLEAA+AYY++AFGAEVHHREIV+SDGVEEALVKVADSY+QLTAATRPDSPIAK +EKRGEGLHHVGYRV DC  A+ +MIAAGATPID  PRPGSRGTTVAFIHPKG+FGTLIELVEE
Sbjct:    1 MILTEIDHVAIAVHDLEAAVAYYEQAFGAEVHHREIVDSDGVEEALVKVADSYVQLTAATRPDSPIAKYLEKRGEGLHHVGYRVDDCQAAMDAMIAAGATPIDQAPRPGSRGTTVAFIHPKGNFGTLIELVEE 133
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BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Match: A0A7V9GF14_9ACTN (Methylmalonyl-CoA epimerase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GF14_9ACTN)

HSP 1 Score: 231 bits (588), Expect = 3.510e-76
Identity = 113/132 (85.61%), Postives = 125/132 (94.70%), Query Frame = 1 
Query:    1 MLLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGATPIDTVPRPGSRGTTVAFIHPKGSFGTLIELVE 396
            MLLTEIDH+AIAVRDLEAAIAYY EAFGAEV HRE+VESDGVEEAL+KVA+SYIQLTAATRPDSP+A+SIEKRGEGLHH+ YRV DCA ALA+M+ AGATP+D +PRPGSRGTTVAFIHPKGSFGTLIELV+
Sbjct:    1 MLLTEIDHVAIAVRDLEAAIAYYAEAFGAEVAHREVVESDGVEEALIKVAESYIQLTAATRPDSPVARSIEKRGEGLHHIAYRVDDCAAALAAMVTAGATPVDHIPRPGSRGTTVAFIHPKGSFGTLIELVQ 132
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BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Match: A0A349BCF6_9ACTN (Methylmalonyl-CoA epimerase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BCF6_9ACTN)

HSP 1 Score: 229 bits (584), Expect = 1.530e-75
Identity = 114/133 (85.71%), Postives = 125/133 (93.98%), Query Frame = 1 
Query:    1 MLLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGATPIDTVPRPGSRGTTVAFIHPKGSFGTLIELVEE 399
            MLLTEIDH+AIAV+DL+AAIAYY EAFGAEV HRE+V+SDGVEEALVKVADSYIQLTAATR DSPIAK +EK+GEGLHH+GYRV DCA+AL SM+AAGATPID  PRPGSRGTTVAFIHPKGSFGTLIELV+E
Sbjct:    1 MLLTEIDHVAIAVKDLDAAIAYYAEAFGAEVDHREVVDSDGVEEALVKVADSYIQLTAATRDDSPIAKFLEKKGEGLHHIGYRVDDCAQALESMVAAGATPIDQAPRPGSRGTTVAFIHPKGSFGTLIELVQE 133
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BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Match: A0A7C7TFB6_9ACTN (Methylmalonyl-CoA epimerase n=8 Tax=root TaxID=1 RepID=A0A7C7TFB6_9ACTN)

HSP 1 Score: 228 bits (582), Expect = 2.890e-75
Identity = 113/133 (84.96%), Postives = 123/133 (92.48%), Query Frame = 1 
Query:    1 MLLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGATPIDTVPRPGSRGTTVAFIHPKGSFGTLIELVEE 399
            M+LTEIDH+AIAV DLEAAIAYY++AFGA VHHRE V+SDGVEEAL+KVADSYIQLTAATRPDSPIAK +EKRGEGLHH+GYRV DC  A+ +MIAAGATPID  PRPGSRGTTVAFIHPKGSFGTLIELVEE
Sbjct:    1 MILTEIDHVAIAVHDLEAAIAYYEQAFGAAVHHRETVDSDGVEEALLKVADSYIQLTAATRPDSPIAKHLEKRGEGLHHIGYRVDDCQAAMDAMIAAGATPIDKAPRPGSRGTTVAFIHPKGSFGTLIELVEE 133
[Close]
BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Match: A0A2E4GV81_9ACTN (Methylmalonyl-CoA epimerase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4GV81_9ACTN)

HSP 1 Score: 228 bits (581), Expect = 4.100e-75
Identity = 114/133 (85.71%), Postives = 122/133 (91.73%), Query Frame = 1 
Query:    1 MLLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGATPIDTVPRPGSRGTTVAFIHPKGSFGTLIELVEE 399
            M+LTEIDHIAIAV DLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLT ATRPDSPIAK ++K+GEGLHHVGYRV DC  AL +M+ AGATPID  PRPGSRGTTVAF+HPKG FGTLIELV+E
Sbjct:    1 MILTEIDHIAIAVHDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTXATRPDSPIAKYLDKKGEGLHHVGYRVDDCQAALXAMVEAGATPIDQAPRPGSRGTTVAFMHPKGXFGTLIELVQE 133
[Close]
BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Match: A0A431IHU2_9ACTN (Methylmalonyl-CoA epimerase n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A431IHU2_9ACTN)

HSP 1 Score: 228 bits (581), Expect = 5.530e-75
Identity = 114/132 (86.36%), Postives = 124/132 (93.94%), Query Frame = 1 
Query:    4 LLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGATPIDTVPRPGSRGTTVAFIHPKGSFGTLIELVEE 399
            LLTEIDH+AIAVRDL+AA+ YYQ AFGA V HRE+VESDGVEEALVKVADSYIQLTAATRPDSPIAK+IEKRGEGLHHVGYRVA+C +AL +M+AAGATPID  PRPGSRGTTVAFIHPKGSFGTLIELV+E
Sbjct:   11 LLTEIDHVAIAVRDLDAAVDYYQRAFGATVAHREVVESDGVEEALVKVADSYIQLTAATRPDSPIAKAIEKRGEGLHHVGYRVANCQEALDAMVAAGATPIDKAPRPGSRGTTVAFIHPKGSFGTLIELVQE 142
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BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Match: A0A6I3F8B3_9ACTN (Methylmalonyl-CoA epimerase n=2 Tax=root TaxID=1 RepID=A0A6I3F8B3_9ACTN)

HSP 1 Score: 227 bits (578), Expect = 1.440e-74
Identity = 114/133 (85.71%), Postives = 122/133 (91.73%), Query Frame = 1 
Query:    1 MLLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGATPIDTVPRPGSRGTTVAFIHPKGSFGTLIELVEE 399
            MLLTEIDHIAIAV+DLEAA+AYYQEAFGAEVHHREIVE DGVEEAL+KVADSYIQLT ATRPDS IAKSIEKRGEGLHHVGYRVA+C +A  +M+AAGA PID  PRPGSRGTTVAF HPK SFGTLIELV+E
Sbjct:    1 MLLTEIDHIAIAVKDLEAAVAYYQEAFGAEVHHREIVEKDGVEEALLKVADSYIQLTRATRPDSAIAKSIEKRGEGLHHVGYRVANCQEAYDAMVAAGAVPIDPAPRPGSRGTTVAFFHPKSSFGTLIELVQE 133
[Close]
BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Match: A0A2E4KE47_9ACTN (Methylmalonyl-CoA epimerase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4KE47_9ACTN)

HSP 1 Score: 226 bits (577), Expect = 1.670e-74
Identity = 113/133 (84.96%), Postives = 122/133 (91.73%), Query Frame = 1 
Query:    1 MLLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVADSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGATPIDTVPRPGSRGTTVAFIHPKGSFGTLIELVEE 399
            M+LTEIDHIAIAV DLEAAIAYY++AFGA+VHHREIVESDGVEEAL+KVADSYIQLTAAT  DSPIAK + KRGEGLHH+GYRV DC+KALA MI AGA PID  PRPGSRGTTVAFIHPKGSFGTLIELV+E
Sbjct:    1 MILTEIDHIAIAVHDLEAAIAYYKDAFGADVHHREIVESDGVEEALIKVADSYIQLTAATNEDSPIAKFLSKRGEGLHHIGYRVDDCSKALAEMIKAGAKPIDEAPRPGSRGTTVAFIHPKGSFGTLIELVQE 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7927.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9B4Q4_9ACTN2.680e-8089.47Methylmalonyl-CoA epimerase n=15 Tax=root TaxID=1 ... [more]
A0A7K1ZAM4_9ACTN1.490e-7787.97Methylmalonyl-CoA epimerase n=2 Tax=Acidimicrobiac... [more]
A0A2E1WP16_9ACTN1.230e-7685.71Methylmalonyl-CoA epimerase n=1 Tax=Acidimicrobiac... [more]
A0A7V9GF14_9ACTN3.510e-7685.61Methylmalonyl-CoA epimerase n=1 Tax=Acidimicrobiia... [more]
A0A349BCF6_9ACTN1.530e-7585.71Methylmalonyl-CoA epimerase n=1 Tax=Acidimicrobiac... [more]
A0A7C7TFB6_9ACTN2.890e-7584.96Methylmalonyl-CoA epimerase n=8 Tax=root TaxID=1 R... [more]
A0A2E4GV81_9ACTN4.100e-7585.71Methylmalonyl-CoA epimerase n=1 Tax=Acidimicrobiac... [more]
A0A431IHU2_9ACTN5.530e-7586.36Methylmalonyl-CoA epimerase n=2 Tax=Acidimicrobiia... [more]
A0A6I3F8B3_9ACTN1.440e-7485.71Methylmalonyl-CoA epimerase n=2 Tax=root TaxID=1 R... [more]
A0A2E4KE47_9ACTN1.670e-7484.96Methylmalonyl-CoA epimerase n=1 Tax=Acidimicrobiac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7927contigP-wetherbeei_contig7927:2150..2551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1229780.BN381_150047
Preferred namemce
PFAMsGlyoxalase_4
Model size402
Max annot lvl201174|Actinobacteria
KEGG rclassRC00780,RC02739
KEGG koko:K05606
KEGG ReactionR02765,R09979
KEGG Pathwayko00280,ko00630,ko00640,ko00720,ko01100,ko01120,ko01200,map00280,map00630,map00640,map00720,map01100,map01120,map01200
KEGG ModuleM00373,M00375,M00376,M00741
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.01e-78
EggNOG OGsCOG0346@1|root,COG0346@2|Bacteria,2IIPR@201174|Actinobacteria,3UWVQ@52018|unclassified Actinobacteria (class)
EC5.1.99.1
DescriptionGlyoxalase-like domain
Cds size402
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187009.5255954-CDS-P-wetherbeei_contig7927:2149..25511683187009.5255954-CDS-P-wetherbeei_contig7927:2149..2551Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7927 2150..2551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7927.3.1prot_P-wetherbeei_contig7927.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7927 2150..2551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7927.3.1

>prot_P-wetherbeei_contig7927.3.1 ID=prot_P-wetherbeei_contig7927.3.1|Name=mRNA_P-wetherbeei_contig7927.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MLLTEIDHIAIAVRDLEAAIAYYQEAFGAEVHHREIVESDGVEEALVKVA
DSYIQLTAATRPDSPIAKSIEKRGEGLHHVGYRVADCAKALASMIAAGAT
PIDTVPRPGSRGTTVAFIHPKGSFGTLIELVEE*
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mRNA from alignment at P-wetherbeei_contig7927:2150..2551-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7927.3.1 ID=mRNA_P-wetherbeei_contig7927.3.1|Name=mRNA_P-wetherbeei_contig7927.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig7927:2150..2551- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCTCACCGAGATCGACCACATCGCCATCGCCGTGCGCGACTTGGA
AGCTGCCATCGCCTACTACCAGGAGGCGTTCGGGGCCGAGGTTCACCACC
GCGAGATCGTCGAGAGCGACGGCGTCGAGGAGGCATTGGTCAAGGTGGCC
GACAGCTACATCCAGCTGACCGCGGCGACCCGCCCGGACTCACCGATCGC
CAAGTCGATCGAGAAGCGCGGCGAGGGGCTGCACCACGTCGGCTACCGCG
TCGCCGACTGCGCCAAGGCGCTCGCCTCGATGATCGCCGCCGGCGCCACG
CCGATCGACACGGTGCCCCGCCCGGGCAGCCGCGGCACCACCGTCGCCTT
CATCCACCCGAAGGGCAGCTTCGGCACCCTCATCGAGCTCGTCGAAGAGT
GA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7927:2150..2551-

>mRNA_P-wetherbeei_contig7927.3.1 ID=mRNA_P-wetherbeei_contig7927.3.1|Name=mRNA_P-wetherbeei_contig7927.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig7927:2150..2551- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCTCACCGAGATCGACCACATCGCCATCGCCGTGCGCGACTTGGA
AGCTGCCATCGCCTACTACCAGGAGGCGTTCGGGGCCGAGGTTCACCACC
GCGAGATCGTCGAGAGCGACGGCGTCGAGGAGGCATTGGTCAAGGTGGCC
GACAGCTACATCCAGCTGACCGCGGCGACCCGCCCGGACTCACCGATCGC
CAAGTCGATCGAGAAGCGCGGCGAGGGGCTGCACCACGTCGGCTACCGCG
TCGCCGACTGCGCCAAGGCGCTCGCCTCGATGATCGCCGCCGGCGCCACG
CCGATCGACACGGTGCCCCGCCCGGGCAGCCGCGGCACCACCGTCGCCTT
CATCCACCCGAAGGGCAGCTTCGGCACCCTCATCGAGCTCGTCGAAGAGT
GA
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