mRNA_P-wetherbeei_contig7925.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7925.1.1
Unique NamemRNA_P-wetherbeei_contig7925.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7925.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7925contigP-wetherbeei_contig7925:623..2838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog176946.XP_007430372.1
Preferred nameNOTCH4
PFAMsAnk_2,Ank_3,DUF3454,EGF,EGF_CA,NOD,NODP,Notch,hEGF
Model size1991
Max annot lvl33208|Metazoa
KEGG koko:K02599,ko:K20996
KEGG Pathwayko01522,ko04320,ko04330,ko04658,ko04919,ko05020,ko05165,ko05200,ko05206,ko05224,map01522,map04320,map04330,map04658,map04919,map05020,map05165,map05200,map05206,map05224
KEGG ModuleM00682
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000179
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota,38BUP@33154|Opisthokonta,3BAFT@33208|Metazoa,3CRZB@33213|Bilateria
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-27_005610.1
Descriptionnegative regulation of growth rate
Cds size1074
COG categoryT
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187009.4286602-UTR-P-wetherbeei_contig7925:622..13401683187009.4286602-UTR-P-wetherbeei_contig7925:622..1340Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7925 623..1340 -
1683187009.4545197-UTR-P-wetherbeei_contig7925:2639..28381683187009.4545197-UTR-P-wetherbeei_contig7925:2639..2838Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7925 2640..2838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187009.4383035-CDS-P-wetherbeei_contig7925:1340..22731683187009.4383035-CDS-P-wetherbeei_contig7925:1340..2273Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7925 1341..2273 -
1683187009.4463685-CDS-P-wetherbeei_contig7925:2498..26391683187009.4463685-CDS-P-wetherbeei_contig7925:2498..2639Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7925 2499..2639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7925.1.1prot_P-wetherbeei_contig7925.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7925 1341..2639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7925.1.1

>prot_P-wetherbeei_contig7925.1.1 ID=prot_P-wetherbeei_contig7925.1.1|Name=mRNA_P-wetherbeei_contig7925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=358bp
MTVGRSLRRPTSTRRRDRSRQTAASREGKATSRSFLPLKGIHIACLKGRL
DIARALLDRGADIRARDFWGRTPMHCAAGAAGGAPLVAMLLSRGADINAT
NADGWSPLATAAAAGRCRAVLLLLAAGADAATPDGGGLTPADRAAAVGDG
VICAMLAARASGFLLVPAEKWLGDGGRDDGSNGGGGGADDGSGDDGSGGS
SDGGGGGNDGIEGKCDRDGRRRRCKRKAAGWTARLTQARHLRAAGRGVLQ
KWQSSDRAVAQRDRGELPLPPQPQLLQQQQPSTVAAAASFVTAAAAIVAT
AAASAAAAAASTAAAAAAFPAPDSALISLEQGATLGRLAVGQLHLGGGAV
MHVVAFC*
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mRNA from alignment at P-wetherbeei_contig7925:623..2838-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7925.1.1 ID=mRNA_P-wetherbeei_contig7925.1.1|Name=mRNA_P-wetherbeei_contig7925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2216bp|location=Sequence derived from alignment at P-wetherbeei_contig7925:623..2838- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCGACTGCCTCCAAAAACGTACGAGTTGCGAAACCTTTGGCGGGAT
AGGCTGCTTTCGCCTCCAACGCGTTCCAGTCAGGGTTGGAAAGGCTCCCT
GAAGAGAAAGCGCGTCGTGTGAACTTGTTTCTGGCCTTTCTCATGGAAAG
ATGAGGAAGAAGGGCGGCCAGGGGCCAAAGGAAGGGGCAGAAGACCGCAA
TGACAGTCGGGCGCTCGCTGCGTCGGCCGACGTCTACGCGCCGCCGGGAT
CGCTCTCGACAAACGGCCGCGAGCAGAGAGGGAAAGGCGACGTCACGGTC
GTTTTTGCCTCTCAAAGGAATACACATCGCGTGTCTTAAGGTAAGCGCGC
GATGAGCGACTAGGTGGCTGGCAGAAGTCCTGGATCCCTTCTTTTGCGCA
TTTCCTTGGTCCCAAACGGGATGGGCTCCAAATCGGTCGTTCCGTGCGTC
TTTTACGGCCGCAGAAAGTTTGTTTGCATCACAACGAGACGAGTAACAGC
CTATTCCGTTTCACGCCGCCGTTGAAGAGGACCCTGCCCGAACTTCTTTT
TTCCACGTCCAAAAGGGTCGCCTGGATATTGCGAGGGCCCTCCTCGACAG
GGGCGCGGACATCCGCGCCCGTGACTTTTGGGGGCGCACGCCGATGCACT
GTGCCGCTGGCGCCGCTGGCGGAGCGCCTCTAGTAGCGATGCTGCTCTCC
CGCGGGGCCGACATCAACGCGACAAACGCCGACGGTTGGTCGCCGCTGGC
GACTGCGGCCGCTGCGGGGCGCTGCCGCGCGGTTCTGCTGCTCCTGGCGG
CCGGCGCCGACGCGGCGACGCCTGACGGCGGTGGGCTGACGCCGGCTGAC
CGGGCGGCCGCCGTCGGAGATGGCGTCATCTGTGCCATGCTGGCGGCGAG
GGCGAGCGGCTTCTTGCTGGTGCCGGCAGAGAAATGGCTCGGCGATGGTG
GCAGGGACGACGGCAGCAATGGTGGCGGTGGCGGCGCTGATGACGGCAGC
GGTGATGACGGTAGCGGCGGCAGCAGTGACGGCGGCGGGGGCGGGAACGA
TGGCATCGAGGGCAAATGCGACCGCGACGGCCGACGCCGTCGCTGCAAAC
GCAAGGCCGCGGGTTGGACGGCAAGGCTTACACAGGCTCGGCACCTCCGA
GCAGCAGGCCGCGGCGTTCTCCAAAAGTGGCAGTCGAGTGACCGTGCAGT
TGCGCAGCGGGATCGCGGCGAACTGCCACTGCCACCGCAACCACAGCTGC
TGCAGCAGCAGCAGCCGTCCACCGTCGCCGCCGCCGCATCCTTCGTCACC
GCTGCCGCCGCCATTGTGGCGACGGCGGCCGCGTCAGCAGCGGCGGCAGC
GGCGTCGACGGCGGCGGCGGCGGCGGCATTTCCAGCCCCCGACAGCGCCT
TGATCTCGCTGGAGCAAGGGGCAACTCTAGGGCGGCTTGCCGTGGGCCAG
CTCCATCTCGGCGGTGGCGCCGTTATGCACGTCGTTGCCTTCTGCTGAGT
CCGGGGCCGCCAATACAAACGCCCGCTGCACCGGCGGGCTCGCCGGGTGC
GGCGGGTACTGTACTGGAACAAATTTGTCGATAAGGAGCGATGGTAGCGG
CGAGCGGACGGCGGCATGTGGGCAGCCCCGAAGGATCGCATGGCGCTGCA
GCATTGCCGTGGCGACGGCGGAAAGGACGCCGCGGCAGCGCCGGCCGGCG
GCGGCGGCGGAGGTGCGTGCGGGGAGAACTGGGTCACCTGCGAGACTACC
ACGGTAATCGTGCGGCCCATTTTGACGCCCGCCTCCGCCGGCGCCGATCC
TATGGGGGAAGTTCCCCAGCAGGAACCATGGATAGTGTTGGCAGGGAAGG
GCTCCGCGAACAGTGGGAACGAAGGGTGCCCTGTAGAATGGGGCGCCGCT
CGGCATGAGGCAGCAGCGGTGGAGCGACTTGCGGACTATTTGTCCCCGAT
GCTAGTGCTGCGCCGGTGTCGCAGGCGGCGGCGGCGGCGGGGTGTGACGG
GTATCAGCGGGCGATAGTCGAGCGGCAGAGGGAGAGCAGCTAGGATAGCG
AAGGGGAATCGGAGGGGAATCGGGCTGGCAGGTGCCGCTGCCGCGTGTAC
CGGGACGCTGTGCTACCAAACGTCGCCAGCGGTCGGTCCGGCGCGGCGGC
GGCACGGTAGGAGAAAATCCAGCGGGGAAGCTGGGTCGTGTCACGCCGAA
ACAAAAAGCACGATTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7925:623..2838-

>mRNA_P-wetherbeei_contig7925.1.1 ID=mRNA_P-wetherbeei_contig7925.1.1|Name=mRNA_P-wetherbeei_contig7925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig7925:623..2838- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGTCGGGCGCTCGCTGCGTCGGCCGACGTCTACGCGCCGCCGGGA
TCGCTCTCGACAAACGGCCGCGAGCAGAGAGGGAAAGGCGACGTCACGGT
CGTTTTTGCCTCTCAAAGGAATACACATCGCGTGTCTTAAGGGTCGCCTG
GATATTGCGAGGGCCCTCCTCGACAGGGGCGCGGACATCCGCGCCCGTGA
CTTTTGGGGGCGCACGCCGATGCACTGTGCCGCTGGCGCCGCTGGCGGAG
CGCCTCTAGTAGCGATGCTGCTCTCCCGCGGGGCCGACATCAACGCGACA
AACGCCGACGGTTGGTCGCCGCTGGCGACTGCGGCCGCTGCGGGGCGCTG
CCGCGCGGTTCTGCTGCTCCTGGCGGCCGGCGCCGACGCGGCGACGCCTG
ACGGCGGTGGGCTGACGCCGGCTGACCGGGCGGCCGCCGTCGGAGATGGC
GTCATCTGTGCCATGCTGGCGGCGAGGGCGAGCGGCTTCTTGCTGGTGCC
GGCAGAGAAATGGCTCGGCGATGGTGGCAGGGACGACGGCAGCAATGGTG
GCGGTGGCGGCGCTGATGACGGCAGCGGTGATGACGGTAGCGGCGGCAGC
AGTGACGGCGGCGGGGGCGGGAACGATGGCATCGAGGGCAAATGCGACCG
CGACGGCCGACGCCGTCGCTGCAAACGCAAGGCCGCGGGTTGGACGGCAA
GGCTTACACAGGCTCGGCACCTCCGAGCAGCAGGCCGCGGCGTTCTCCAA
AAGTGGCAGTCGAGTGACCGTGCAGTTGCGCAGCGGGATCGCGGCGAACT
GCCACTGCCACCGCAACCACAGCTGCTGCAGCAGCAGCAGCCGTCCACCG
TCGCCGCCGCCGCATCCTTCGTCACCGCTGCCGCCGCCATTGTGGCGACG
GCGGCCGCGTCAGCAGCGGCGGCAGCGGCGTCGACGGCGGCGGCGGCGGC
GGCATTTCCAGCCCCCGACAGCGCCTTGATCTCGCTGGAGCAAGGGGCAA
CTCTAGGGCGGCTTGCCGTGGGCCAGCTCCATCTCGGCGGTGGCGCCGTT
ATGCACGTCGTTGCCTTCTGCTGA
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