mRNA_P-wetherbeei_contig10227.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10227.2.1
Unique NamemRNA_P-wetherbeei_contig10227.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10227.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10227contigP-wetherbeei_contig10227:1220..1573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size355
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185859.9984336-UTR-P-wetherbeei_contig10227:1219..12281683185859.9984336-UTR-P-wetherbeei_contig10227:1219..1228Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10227 1220..1228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185860.0071144-CDS-P-wetherbeei_contig10227:1228..15731683185860.0071144-CDS-P-wetherbeei_contig10227:1228..1573Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10227 1229..1573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10227.2.1prot_P-wetherbeei_contig10227.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10227 1229..1573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10227.2.1

>prot_P-wetherbeei_contig10227.2.1 ID=prot_P-wetherbeei_contig10227.2.1|Name=mRNA_P-wetherbeei_contig10227.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MDEAEKEALLGRFRRDHDKAVEALQADAAATRNRLEDKLRARRNKKQRAL
DTTAAAQRARLAEEARRELRTFEEQAAATAALQKEAAATAMAQVQPEDAL
PALPAAAADATGGGG
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mRNA from alignment at P-wetherbeei_contig10227:1220..1573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10227.2.1 ID=mRNA_P-wetherbeei_contig10227.2.1|Name=mRNA_P-wetherbeei_contig10227.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig10227:1220..1573+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCGAGATGGACGAGGCGGAGAAGGAAGCGCTGCTCGGCCGGTTTCG
GCGGGACCATGACAAGGCGGTGGAGGCACTGCAGGCGGACGCGGCGGCGA
CGCGGAACCGGCTGGAGGACAAGCTGCGGGCGCGGCGGAACAAGAAGCAG
CGGGCGCTTGACACGACAGCGGCAGCGCAGCGCGCCCGGCTCGCCGAAGA
GGCCCGCCGCGAGCTGCGCACGTTCGAGGAGCAGGCGGCCGCGACGGCGG
CGCTGCAGAAGGAGGCGGCGGCGACCGCCATGGCGCAGGTGCAGCCGGAG
GATGCGCTGCCCGCGCTGCCTGCGGCGGCGGCAGATGCCACTGGCGGCGG
CGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10227:1220..1573+

>mRNA_P-wetherbeei_contig10227.2.1 ID=mRNA_P-wetherbeei_contig10227.2.1|Name=mRNA_P-wetherbeei_contig10227.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig10227:1220..1573+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAGGCGGAGAAGGAAGCGCTGCTCGGCCGGTTTCGGCGGGACCA
TGACAAGGCGGTGGAGGCACTGCAGGCGGACGCGGCGGCGACGCGGAACC
GGCTGGAGGACAAGCTGCGGGCGCGGCGGAACAAGAAGCAGCGGGCGCTT
GACACGACAGCGGCAGCGCAGCGCGCCCGGCTCGCCGAAGAGGCCCGCCG
CGAGCTGCGCACGTTCGAGGAGCAGGCGGCCGCGACGGCGGCGCTGCAGA
AGGAGGCGGCGGCGACCGCCATGGCGCAGGTGCAGCCGGAGGATGCGCTG
CCCGCGCTGCCTGCGGCGGCGGCAGATGCCACTGGCGGCGGCGGC
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