mRNA_P-wetherbeei_contig1292.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A6H5KY82_9PHAE (RECA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY82_9PHAE) HSP 1 Score: 205 bits (522), Expect = 6.280e-59 Identity = 132/278 (47.48%), Postives = 168/278 (60.43%), Query Frame = 1
Query: 1 AGMPTEMRTALSIFQSGEER-RLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTARPVSVHEGG----------------LDGSGNVPALGLAWTQCVSHRFVVRRLDRRFSCFSLAGSDQADAGRGVGN 783
AG E TAL++ ++ RLSFGC LDAAF GGV + GITEIAGEAGAGKTQLCLQLLL QA+L+ G +GGK+ VL+CGEG FPSRRLRQ+A T + + G V LM+GVCI + Q+ + LP +M + V+LVVID+I+ALFRS G + D+ R+ +L ++QQMKRL D H AFVV+NQ VTA+ S GG +VPA+GL W+QC++ RF VRR D R S S+ R N
Sbjct: 54 AGTAPECTTALAMLKNAARLDRLSFGCPSLDAAFEGGVRVQGITEIAGEAGAGKTQLCLQLLL-QAQLAPEAGGLGGKSYVLTCGEGDFPSRRLRQMASTYQS-RHG-VKPEKLMEGVCIQNAKTLDDQMMIIMEHLPHIMRSQNVKLVVIDSIAALFRSDLGCGRGDIGERSRLLGRLSQQMKRLGDRHGAAFVVVNQ-VTAKFGSSTIGGGXXXXXXXXXXXXXXXXXXXXSVPAMGLLWSQCINTRFKVRRRDYRLSLQPPPSSESGSRQRATPN 327
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: D8LGE7_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE7_ECTSI) HSP 1 Score: 199 bits (506), Expect = 1.260e-57 Identity = 123/245 (50.20%), Postives = 157/245 (64.08%), Query Frame = 1
Query: 1 AGMPTEMRTALSIFQSGEER-RLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTARPVSVH--------------EGGLDGSGNVPALGLAWTQCVS 690
AG E TAL++ + RLSFGC LDAAF GGV + G+TEIAGEAGAGKTQLCLQLLL QA+L+ G +GGK+ VL+CGEG FPSRRLRQ+A T + + G V LM+GVCI + Q+ + LP +M + V+LVVID+I+ALFRS G + D+ R+ +L ++QQMKRL D H AFVV+NQ VTAR S GG G G+VPA+GL W+QC++
Sbjct: 54 AGTAPECTTALAMSKDAARLDRLSFGCPSLDAAFEGGVRVQGVTEIAGEAGAGKTQLCLQLLL-QAQLAPEAGGLGGKSYVLTCGEGDFPSRRLRQMASTYQS-RHG-VKPEKLMEGVCIQNAKTLDDQMMIIMEHLPHIMRSQNVKLVVIDSIAALFRSDMGRGRGDIGERSRLLGRLSQQMKRLGDRHGAAFVVVNQ-VTARFGSSTIGGGGGRGQGTMGVVGGSGGGGSVPAMGLLWSQCIN 294
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A4D9CSH0_9STRA (RECA_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSH0_9STRA) HSP 1 Score: 162 bits (410), Expect = 4.440e-43 Identity = 107/254 (42.13%), Postives = 145/254 (57.09%), Query Frame = 1
Query: 10 PTEMRTALSIFQSGEE-RRLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEG--------IVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARE---RVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQ---QVTARPVSVHEGG---LDGSGNVPALGLAWTQCVSHRFVVRRLD 717
P RTA ++Q + RR+S GC VLDA F GG+P HG+ E++G AGAGKTQL LQLL++Q R + AE V G++ LS EG P++RL ++A G +++ V I+ N E Q+ L +QLP+L+ ++RL VID++SALFR F S+ D RA ++ MA+QMKRLSD FVV NQ A V EGG + G G PALGL+W+ CV RF++ R D
Sbjct: 36 PRPPRTAYDLYQDEKHTRRVSLGCPVLDATFRGGLPGHGVVEVSGMAGAGKTQLMLQLLVQQVRDAEAEWRRAKYATPFVAGRSFYLST-EGPLPAKRLAEMAAATCPEDSGFAQ--RVLESVIIVEAKNVEDQLYLLTTQLPSLLGDASLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFTMAKQMKRLSDRWGLPFVVTNQVTADFAAATFGVWEGGNADVVGDGVQPALGLSWSNCVHTRFLLSRRD 286
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A0M0LPY7_9EUKA (DNA repair protein xrcc3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LPY7_9EUKA) HSP 1 Score: 139 bits (351), Expect = 3.780e-35 Identity = 102/240 (42.50%), Postives = 134/240 (55.83%), Query Frame = 1
Query: 46 SGEERRLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPS--RRLRQLADTVATTKLGL-VDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRST---FGGSQRDVAG-RAPVLIAMAQQMKRLSDEHNCAFVVLNQQV----------TARPVSVHEGGL-DGSGNVPALGLAWTQCVSHRFVVRR 711
+G R L GC LDA GGG+ +GITEIAGEAGAGKTQL LQL L QA+L AEG +GG A L G RRL QLAD A + D L + V +L + +P+ + ++PAL+ + VRL+VID+I ++R S R + G RA L+ +A ++K L+ + + A VVLNQ V TA P + G DGS VPALGLAW+ CV+ R V+ R
Sbjct: 5 AGHTRLLKTGCPHLDAFLGGGIDTNGITEIAGEAGAGKTQLALQLTL-QAQLPPAEGGLGGAAVYLYGGTANVEPALRRLHQLADAFAKRHWRVQADCELLKNNVYVLQIEDPDDLWRTVSERVPALLGQHSVRLLVIDSIGGVYRGQDEESALSARTMHGQRAQQLLRLAAKLKELAHKFDIATVVLNQVVDKPSDGQNRRTAAPWELGACGTPDGSMRVPALGLAWSSCVNTRLVLTR 243
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A8B7ZUW3_ACAPL (DNA repair protein XRCC3-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZUW3_ACAPL) HSP 1 Score: 139 bits (350), Expect = 1.830e-34 Identity = 100/250 (40.00%), Postives = 138/250 (55.20%), Query Frame = 1
Query: 25 TALSIFQ-----SGEERRLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADT----VATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRRLDRRFSCFSLAG 747
TAL ++Q S LS GCEVLDA GG+ GITEIAGE+ AGKTQLC+QL L R + G+ GG V C E FPS+RL QL + ++ TK + L D + I L +Q V +Q ++P L+ + RV+L+V+D+++ALFR F S R+ A RA L + Q+ RLS H+ V +NQ VTA + + +PALGLAW+ V R ++ R + + S F AG
Sbjct: 62 TALELYQGTCPKSLRVSSLSTGCEVLDAFLRGGILSPGITEIAGESAAGKTQLCMQLCLSVQRSTVNGGLDGG--AVYICTEDVFPSKRLHQLIENFQKRLSATKYHQLK---LGDNIFIEHLSERDQLVHCIQYRIPLLLKQSRVKLIVVDSLAALFRCEF--SPREAARRARHLQTLGAQLHRLSWLHDVPVVCVNQ-VTANMSNNSSSHSNQCQLIPALGLAWSNLVQTRLMLGRTNYKLSSFDAAG 303
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A7S4ESE5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ESE5_CHRCT) HSP 1 Score: 137 bits (344), Expect = 2.190e-33 Identity = 96/254 (37.80%), Postives = 138/254 (54.33%), Query Frame = 1
Query: 58 RRLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLAD--TVATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVA-GRAPVLIAMAQQMKRLSDEHNCAFVVLNQ--------------------------------QVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHR-FVVRR 711
R+LS GC +LDA+ GGG+ GITEIAG AG GKTQL LQL+L Q +L G +GG A +L + ++RLRQLAD +V ++LG + + L+D V + +H+ E E L LP ++A RVRL+V+D+ ALFR+ +R A R+ LIA A ++K+LSD+++ A VV N+ VT P+ G +PALGL+W+ C++ R F+ RR
Sbjct: 25 RKLSTGCPLLDASLGGGLDARGITEIAGAAGVGKTQLVLQLML-QVQLPVEYGGLGGGAILLHSAPEQATTKRLRQLADAFSVRHSRLG-AEPNRLLDHVTMGKVHSAEMLAEMLSRHLPQILATSRVRLLVVDSFGALFRAV---DERGAALERSSQLIAHAHRLKQLSDDYDIAVVVTNEATDKPIEQIAAAAGDIAAPSLQSLSLVSCNRPSVTVSPIEAKACCTSGKMTLPALGLSWSSCINTRLFLTRR 273
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A1V9Z145_9STRA (DNA repair protein XRCC3 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z145_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.240e-32 Identity = 82/213 (38.50%), Postives = 122/213 (57.28%), Query Frame = 1
Query: 73 GCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRR 711
GCE +D GG P ++EI G AG+GKTQLCLQLLL QA+ AEG + C + +G P +RL QLA DG+ ++ + + +P Q + AL+++LP L+ + VRLV++D I+A+FR S + R+ V+ M M+ L+ +++ AF+V+NQ +TA + G G VPALGLAW+ CV+ RF V +
Sbjct: 15 GCEAVDLLLEGGFPTGIVSEICGVAGSGKTQLCLQLLL-QAQRPLAEGGLAASCCYMY-SDGLSPLKRLDQLASAS--------DGAVSLNNIFLEAATDPVQLLHALKTRLPPLLDQHNVRLVIVDAITAVFRGLSVDSASEAGDRSRVMFEMVNVMRILAAQYDVAFIVVNQ-MTANMKT-------GDGTVPALGLAWSACVNQRFEVAK 209
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A5D6XH12_9STRA (RECA_2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH12_9STRA) HSP 1 Score: 129 bits (325), Expect = 1.700e-31 Identity = 94/250 (37.60%), Postives = 136/250 (54.40%), Query Frame = 1
Query: 19 MRTALSIFQSGEERR-LSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLAD-------TVATTKL-----------GLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRR 711
M TAL + + + L G LDA GG I+E+ GEA AGKTQLCLQLLL Q L A G +G AC +S EG +RL +LA ++A+ K G + SA +DG+ + L+ ++ ++ LQS+LPAL+ + +LVVID+I+ALFR S ++ + R+ ++ MA ++ LS ++ FVV NQ VT + L GS PALGL+W+ CV+ R +V R
Sbjct: 1 MTTALELLHAQPQTAVLRSGVASLDALLRGGFRAGVISELCGEASAGKTQLCLQLLL-QCALPPALGGLGASACYVST-EGVGSVKRLHELAGVYARRFGSLASRKRKRPTDSSEESEGDANASAFLDGIFVEQLYESDELLDLLQSRLPALLEEQNTKLVVIDSIAALFRQEATASVKEASRRSRLMFHMANCIRILSAQYGVVFVVSNQ-VTGNFAAAPAEALQGSAFKPALGLSWSNCVNQRLMVTR 247
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: L8GYS6_ACACA (DNA repair protein XRCC3, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYS6_ACACA) HSP 1 Score: 130 bits (328), Expect = 6.590e-31 Identity = 83/224 (37.05%), Postives = 124/224 (55.36%), Query Frame = 1
Query: 61 RLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGLVD----GSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQ---QVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRR 711
+L GC +LD GGG+ ITEIAGEAG+GKTQLCLQL L Q +L EG +GG A + EG FP RRL QL + + G L D + I + + +Q ++ Q+P L+ + VRLV++D+I+AL R +G + R+ VL + A Q+K+++D+ VV+NQ V + + + VPALGLAW+ C++ R ++ +
Sbjct: 108 KLKLGCPLLDQCLGGGLLPRHITEIAGEAGSGKTQLCLQLAL-QVQLPPEEGGLGGGAIYIGT-EGNFPQRRLDQLHEAFRHKHAHVFPPRRKGFDLRDNIYIKHVGSIDQLFHSMLKQVPPLVQQRNVRLVIVDSIAALLRYEYGSGTSQMVERSRVLFSQANQLKQIADQLQVVVVVINQVSDYVDDSRLVLSDFAAHKKRVVPALGLAWSNCINSRLLLSK 329
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A8K1C2K3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2K3_PYTOL) HSP 1 Score: 128 bits (322), Expect = 7.220e-31 Identity = 95/258 (36.82%), Postives = 141/258 (54.65%), Query Frame = 1
Query: 7 MPTEMRTALSIFQSGEER--RLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGL---------VDGSA------LMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQ------QVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRR 711
M T+ RTAL ++Q+ E+ LS GC +D GG +TE+ GEA AGKTQLCLQLLL Q+ L G +GG AC + C EG +RL +L K G V+ S+ L+D V I ++ ++ V+ LQS+LP L+A +LVVID+++A+FR GS +D + R+ ++ +A M+ LS + FV+ NQ + A VS H + + PALGL+W+ C++ R ++RR
Sbjct: 1 MATQGRTALDLWQAREQEVVTLSSGCSSIDELLQGGFRSGILTEVCGEASAGKTQLCLQLLL-QSCLPPVLGGLGGSACYI-CTEGIGSIKRLHELGHAY-NQKYGSMLRKRRRTDVEQSSYNSMPSLLDSVFIEQVYEVDELVDVLQSRLPTLLADHDTKLVVIDSVAAVFRLESTGSVKDASERSRLMFHLANCMRILSAQFRVIFVMTNQVTGNFTEGAASIVSTHS-----NQHKPALGLSWSSCINQRLMLRR 250 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1292.4.1 >prot_P-wetherbeei_contig1292.4.1 ID=prot_P-wetherbeei_contig1292.4.1|Name=mRNA_P-wetherbeei_contig1292.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=359bp MPTEMRTALSIFQSGEERRLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGback to top mRNA from alignment at P-wetherbeei_contig1292:6002..7220- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1292.4.1 ID=mRNA_P-wetherbeei_contig1292.4.1|Name=mRNA_P-wetherbeei_contig1292.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1219bp|location=Sequence derived from alignment at P-wetherbeei_contig1292:6002..7220- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1292:6002..7220- >mRNA_P-wetherbeei_contig1292.4.1 ID=mRNA_P-wetherbeei_contig1292.4.1|Name=mRNA_P-wetherbeei_contig1292.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1077bp|location=Sequence derived from alignment at P-wetherbeei_contig1292:6002..7220- (Phaeothamnion wetherbeei SAG_119_79)back to top |