mRNA_P-wetherbeei_contig1292.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1292.3.1
Unique NamemRNA_P-wetherbeei_contig1292.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1292.3.1 vs. uniprot
Match: A0A167N4U1_PHYB8 (C2 domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167N4U1_PHYB8)

HSP 1 Score: 55.1 bits (131), Expect = 1.640e-5
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 2 
Query:  326 LLVSILGARGLVAVNRDGTSNPYAVLRYNRTEKKTPVCSDTVDPRWSSHFIYPM 487
            L V+I+GAR L A +R+G+S+PYAV+R N  +  T V   T+DP W   F +P+
Sbjct:    6 LRVAIIGARDLAAADRNGSSDPYAVVRINDKKFTTKVVKQTLDPVWDFDFDFPI 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1292.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A167N4U1_PHYB81.640e-546.30C2 domain-containing protein n=1 Tax=Phycomyces bl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1292contigP-wetherbeei_contig1292:4001..5936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog160860.XP_007347267.1
Preferred namePSD2
PFAMsC2,PS_Dcarbxylase
Model size1145
Max annot lvl4751|Fungi
KEGG rclassRC00299
KEGG koko:K01613
KEGG ReactionR02055
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
KEGG ModuleM00093
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0004609,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0006575,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006656,GO:0006658,GO:0006659,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008289,GO:0008610,GO:0008654,GO:0009058,GO:0009605,GO:0009607,GO:0009987,GO:0009991,GO:0012505,GO:0016020,GO:0016829,GO:0016830,GO:0016831,GO:0019637,GO:0030447,GO:0031090,GO:0031410,GO:0031667,GO:0031982,GO:0031984,GO:0036170,GO:0036171,GO:0036180,GO:0040007,GO:0042221,GO:0042398,GO:0042594,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0050896,GO:0071704,GO:0090407,GO:0097164,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098852,GO:1901564,GO:1901566,GO:1901576
Exons5
Evalue0.00011
EggNOG OGsCOG0688@1|root,COG2058@1|root,KOG1762@2759|Eukaryota,KOG2419@2759|Eukaryota,38CUE@33154|Opisthokonta,3NVAR@4751|Fungi,3UZQG@5204|Basidiomycota
EC4.1.1.65
DescriptionCatalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine
Cds size909
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1292.3.1prot_P-wetherbeei_contig1292.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1292 4001..5701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.4562175-CDS-P-wetherbeei_contig1292:4000..40311683185966.4562175-CDS-P-wetherbeei_contig1292:4000..4031Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1292 4001..4031 -
1683185966.4683576-CDS-P-wetherbeei_contig1292:4234..43801683185966.4683576-CDS-P-wetherbeei_contig1292:4234..4380Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1292 4235..4380 -
1683185966.477521-CDS-P-wetherbeei_contig1292:4559..46711683185966.477521-CDS-P-wetherbeei_contig1292:4559..4671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1292 4560..4671 -
1683185966.4866056-CDS-P-wetherbeei_contig1292:4860..53101683185966.4866056-CDS-P-wetherbeei_contig1292:4860..5310Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1292 4861..5310 -
1683185966.4972556-CDS-P-wetherbeei_contig1292:5531..57011683185966.4972556-CDS-P-wetherbeei_contig1292:5531..5701Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1292 5532..5701 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.5049946-UTR-P-wetherbeei_contig1292:5701..59361683185966.5049946-UTR-P-wetherbeei_contig1292:5701..5936Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1292 5702..5936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1292.3.1

>prot_P-wetherbeei_contig1292.3.1 ID=prot_P-wetherbeei_contig1292.3.1|Name=mRNA_P-wetherbeei_contig1292.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=303bp
MEVFQPASAHLAEDDDGGNEEAEDGPVADFLLVSILGARGLVAVNRDGTS
NPYAVLRYNRTEKKTPVCSDTVDPRWSSHFIYPMPSAVAEQSTGAAGAAL
TSSIPTIPEGTEDDGAGASAPPPTASVGEGCGSDNGGGGGGSGSGSRELL
LMLFSFEAVMSDDLIGKVEIQLPENLPMNKPFAFEKWYQVQPSARAEQDR
LQFRRKSHLRAVSRALNPKAWVEEKPLGGQGEVLLSIVPLALAQVPGLLD
SLPRTRRHLSLYMAATNRIIADLEAALQRTSPFVSPPMSPGGRGIADGDL
PPL
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mRNA from alignment at P-wetherbeei_contig1292:4001..5936-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1292.3.1 ID=mRNA_P-wetherbeei_contig1292.3.1|Name=mRNA_P-wetherbeei_contig1292.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1936bp|location=Sequence derived from alignment at P-wetherbeei_contig1292:4001..5936- (Phaeothamnion wetherbeei SAG_119_79)
GAGAGTGCCGCAGGAAAGCGAATGAAGTCTGGCAGTGAACTTCACTTAAT
TCTGCGCCCAATCTTCACCGCTTTGGTTCATCTGACAGCGGAGCGAAGAA
TGAGATCAGAAGGTTCCTTCGATCCTTCGCTTTTCCCTCGGGCGACCGTT
ACAGCAGTACCGTAACCGTTCGGCGTAACCGCTTAAATTAGCCAAGCTAC
AGGCACCGCTGCACTGCCAAACCTAGCAACGCAGGATGGAAGTGTTTCAA
CCCGCCAGCGCCCACCTTGCCGAAGATGACGACGGCGGAAACGAGGAAGC
CGAGGACGGCCCTGTCGCGGACTTCCTTCTGGTTTCGATTCTCGGAGCGC
GCGGTCTCGTTGCGGTCAACAGGGACGGAACGTCCAACCCTTATGCCGTC
TTACGGTAAGCGAATATCTTCAGCTGCGGCACTTGATGACTAGGGACGCG
CTGCAATGTCTCTTCTGCAGGACGTTTTGGAGCGCTATCAAAGAGCGACA
TGTTGAAAAGATTTGCTTTTCTTCTAATGATCCCTCTCGAAAGAAGGATA
CGGAAGTAAGCGACTCATTTACTAGATAGTCGACTCGCAACCGCGATTAT
GTTGCATCAAACATGCCCACCTTCAGGTACAACCGCACTGAGAAGAAGAC
GCCGGTGTGTTCGGACACGGTCGATCCGCGCTGGTCATCTCACTTTATCT
ACCCGATGCCTAGCGCAGTCGCGGAACAGTCCACTGGTGCCGCCGGTGCC
GCACTGACCTCGTCGATTCCTACCATTCCAGAAGGCACGGAAGACGATGG
CGCTGGCGCTTCCGCTCCCCCGCCAACGGCGTCGGTCGGCGAGGGTTGCG
GCAGTGACAACGGCGGCGGCGGCGGCGGAAGTGGCAGTGGCTCACGGGAG
CTGCTGCTGATGCTCTTCTCTTTTGAGGCCGTCATGTCGGACGACCTCAT
CGGCAAGGTGGAGATCCAACTGCCAGAGAACCTTCCCATGAACAAACCGT
TCGCCTTTGAGAAGTGGTACCAGGTGCAACCGTCGGCACGTGCTGAGCAG
GACCGCCTCCAGTTCCGCCGCAAGAGGTGGGAAGGCGCTGTTTGAATTGC
ATTTGTTTGCTGCAAGTTGTCTTCTCCTCTCTGCTCGGTTGTTTTGGATG
CTGCCATATAAATATGGCCCACTTTGAGGTAAGGGGAAGGAAGACTCTAC
TGGCTCTGTACCTCATACACGCTGGCGTCACACAATTCGGCCAATTTTCT
CTCATTGTGCTGCAGTCACCTGCGAGCCGTGTCTCGAGCCCTTAATCCGA
AGGCGTGGGTGGAAGAAAAGCCCCTCGGCGGCCAGGGCGAGGTTTTACTC
AGCATAGTGCCACTTGCGTTGGCGCAGGTGAGAGGCGTTTTCCACCATGC
CGCGTCGCTGATATCACCTTCGCCGCCGCCGCTGCCGATTCCTTTCAGAG
CAGTTCGGATCCCTTCGGTTTGCTTTCATCCATGGCTCCATTCCAAACAA
GTCACCTGACTTCTTCTACAACTGCTGCCCCCCTTCGCGATCTCCTCTGC
CGGAAGGTGCCGGGACTGCTCGATAGCCTGCCGCGAACTCGGCGGCACCT
CTCGCTGTACATGGCCGCCACCAACCGCATCATTGCAGACCTCGAGGCAG
CACTACAGCGCACCAGTCCATTTGTCAGTCCGCCCATGAGCCCCGGTGGA
AGGTACATGACTACCGCTTCCGACGGCAGATGCTGCAGGCATTCATTCCT
CTCAAAGATGCACAAAACAGCCGGAGTTCTACTGCCGAATTTGAATTAAC
TTTCTCTTAAATGCCACTTCACAGCACTGAGATTGCTGCCTAAACGGGAT
CGCGAACCATGAGCTTTCAACTTTCCCTCACATATCACCTTTTCGCCTTC
TTCAGGGGCATCGCCGACGGCGACCTTCCGCCGCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1292:4001..5936-

>mRNA_P-wetherbeei_contig1292.3.1 ID=mRNA_P-wetherbeei_contig1292.3.1|Name=mRNA_P-wetherbeei_contig1292.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig1292:4001..5936- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGTGTTTCAACCCGCCAGCGCCCACCTTGCCGAAGATGACGACGG
CGGAAACGAGGAAGCCGAGGACGGCCCTGTCGCGGACTTCCTTCTGGTTT
CGATTCTCGGAGCGCGCGGTCTCGTTGCGGTCAACAGGGACGGAACGTCC
AACCCTTATGCCGTCTTACGGTACAACCGCACTGAGAAGAAGACGCCGGT
GTGTTCGGACACGGTCGATCCGCGCTGGTCATCTCACTTTATCTACCCGA
TGCCTAGCGCAGTCGCGGAACAGTCCACTGGTGCCGCCGGTGCCGCACTG
ACCTCGTCGATTCCTACCATTCCAGAAGGCACGGAAGACGATGGCGCTGG
CGCTTCCGCTCCCCCGCCAACGGCGTCGGTCGGCGAGGGTTGCGGCAGTG
ACAACGGCGGCGGCGGCGGCGGAAGTGGCAGTGGCTCACGGGAGCTGCTG
CTGATGCTCTTCTCTTTTGAGGCCGTCATGTCGGACGACCTCATCGGCAA
GGTGGAGATCCAACTGCCAGAGAACCTTCCCATGAACAAACCGTTCGCCT
TTGAGAAGTGGTACCAGGTGCAACCGTCGGCACGTGCTGAGCAGGACCGC
CTCCAGTTCCGCCGCAAGAGTCACCTGCGAGCCGTGTCTCGAGCCCTTAA
TCCGAAGGCGTGGGTGGAAGAAAAGCCCCTCGGCGGCCAGGGCGAGGTTT
TACTCAGCATAGTGCCACTTGCGTTGGCGCAGGTGCCGGGACTGCTCGAT
AGCCTGCCGCGAACTCGGCGGCACCTCTCGCTGTACATGGCCGCCACCAA
CCGCATCATTGCAGACCTCGAGGCAGCACTACAGCGCACCAGTCCATTTG
TCAGTCCGCCCATGAGCCCCGGTGGAAGGGGCATCGCCGACGGCGACCTT
CCGCCGCTA
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