mRNA_P-wetherbeei_contig7905.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7905.1.1
Unique NamemRNA_P-wetherbeei_contig7905.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7905.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7905contigP-wetherbeei_contig7905:1679..2808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size952
Hectar predicted targeting categoryother localisation
Exons2
Cds size777
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187008.2129083-UTR-P-wetherbeei_contig7905:1678..17641683187008.2129083-UTR-P-wetherbeei_contig7905:1678..1764Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7905 1679..1764 -
1683187008.223223-UTR-P-wetherbeei_contig7905:1942..20311683187008.223223-UTR-P-wetherbeei_contig7905:1942..2031Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7905 1943..2031 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187008.2324386-CDS-P-wetherbeei_contig7905:2031..28081683187008.2324386-CDS-P-wetherbeei_contig7905:2031..2808Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7905 2032..2808 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7905.1.1prot_P-wetherbeei_contig7905.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7905 2032..2808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7905.1.1

>prot_P-wetherbeei_contig7905.1.1 ID=prot_P-wetherbeei_contig7905.1.1|Name=mRNA_P-wetherbeei_contig7905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
PSERLFGGGQRSIAASVAAVADTSRSLRRVLTGVQQRFLEFFLACLGDII
HFACAASSFIPELLNSAAVASEHSAGESVVLRASGCSDRATGRSGGGSGG
CSDMVGLGGDGGGSAARGASPSEMLQQGILFAVLAVGALHSGGNKDAVDH
SGLVLCPNFQMQSALHSSNFAGSSAGGGGSSCTGGGGGGDNGGGKCAGED
RGGADTGCCCGGGGSISAGSGGGGGGGSSSGSGGTYSGGGGSVDSPEVLF
STGATAAA*
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mRNA from alignment at P-wetherbeei_contig7905:1679..2808-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7905.1.1 ID=mRNA_P-wetherbeei_contig7905.1.1|Name=mRNA_P-wetherbeei_contig7905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1130bp|location=Sequence derived from alignment at P-wetherbeei_contig7905:1679..2808- (Phaeothamnion wetherbeei SAG_119_79)
CCGTCGGAACGTCTCTTTGGCGGCGGGCAGAGATCGATCGCCGCGTCGGT
GGCGGCCGTGGCAGACACGTCACGCTCTCTGCGTCGGGTGCTGACCGGCG
TGCAGCAGCGCTTCCTGGAGTTCTTTCTAGCCTGCTTAGGGGATATTATA
CATTTCGCCTGCGCCGCCAGCTCCTTTATCCCCGAGCTTTTGAATTCCGC
GGCAGTGGCCTCGGAACACAGCGCCGGGGAAAGCGTTGTGCTTCGTGCCA
GTGGCTGCAGCGACCGCGCCACCGGCCGAAGTGGCGGCGGCAGCGGCGGC
TGCAGCGATATGGTCGGCCTCGGGGGCGATGGAGGCGGTTCGGCTGCTCG
TGGTGCGTCTCCCAGCGAAATGCTTCAGCAGGGGATCCTATTTGCCGTTC
TCGCTGTTGGCGCGCTGCATTCGGGCGGCAATAAGGATGCAGTCGACCAT
TCGGGCTTGGTGCTGTGCCCTAACTTCCAAATGCAGAGTGCTCTGCATTC
GTCCAATTTCGCCGGCAGCAGCGCCGGCGGCGGTGGCAGTAGCTGCACCG
GCGGTGGTGGCGGCGGCGACAACGGTGGTGGTAAATGCGCTGGGGAGGAT
CGCGGTGGTGCCGACACTGGCTGCTGCTGCGGCGGCGGCGGCAGCATCAG
CGCTGGCAGTGGTGGCGGTGGCGGCGGCGGCAGCAGTAGCGGCAGCGGTG
GCACCTATTCTGGTGGTGGCGGCAGCGTCGACAGCCCTGAGGTGCTTTTT
TCCACTGGCGCGACTGCAGCTGCTTAAAAACAGCTCCGATGGACGCATCC
CTCTGCGTGCTGCAGATCTTGGAAGGTCTCTATTTCCTCCTTTCCGGAAG
GCCGCTGCTTTTCGAGGTGAGCCGTCGTCCGCACCGCTTTCAAATGTTGC
TTAAAGTGTCTACCTTCCGGCGAGAGGGCGTATGAGAGTGGACGTAAGGT
GCTCCTTTTCTAGACTACAAATTCTCTCAGGAGTGCCTGCAGCATGCAAC
CGACTCCTTTCGGCTGGCATGGCCTGCCGCCCGACCTGAAGCAGCGCCGG
TGGTGGCAGCGGCGGCGGCGGCGTTTACGTCCTCGTCGGCGGCGGAGGCA
GCGGCCATGAATTCGGAATCCCCGATTTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7905:1679..2808-

>mRNA_P-wetherbeei_contig7905.1.1 ID=mRNA_P-wetherbeei_contig7905.1.1|Name=mRNA_P-wetherbeei_contig7905.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig7905:1679..2808- (Phaeothamnion wetherbeei SAG_119_79)
CCGTCGGAACGTCTCTTTGGCGGCGGGCAGAGATCGATCGCCGCGTCGGT
GGCGGCCGTGGCAGACACGTCACGCTCTCTGCGTCGGGTGCTGACCGGCG
TGCAGCAGCGCTTCCTGGAGTTCTTTCTAGCCTGCTTAGGGGATATTATA
CATTTCGCCTGCGCCGCCAGCTCCTTTATCCCCGAGCTTTTGAATTCCGC
GGCAGTGGCCTCGGAACACAGCGCCGGGGAAAGCGTTGTGCTTCGTGCCA
GTGGCTGCAGCGACCGCGCCACCGGCCGAAGTGGCGGCGGCAGCGGCGGC
TGCAGCGATATGGTCGGCCTCGGGGGCGATGGAGGCGGTTCGGCTGCTCG
TGGTGCGTCTCCCAGCGAAATGCTTCAGCAGGGGATCCTATTTGCCGTTC
TCGCTGTTGGCGCGCTGCATTCGGGCGGCAATAAGGATGCAGTCGACCAT
TCGGGCTTGGTGCTGTGCCCTAACTTCCAAATGCAGAGTGCTCTGCATTC
GTCCAATTTCGCCGGCAGCAGCGCCGGCGGCGGTGGCAGTAGCTGCACCG
GCGGTGGTGGCGGCGGCGACAACGGTGGTGGTAAATGCGCTGGGGAGGAT
CGCGGTGGTGCCGACACTGGCTGCTGCTGCGGCGGCGGCGGCAGCATCAG
CGCTGGCAGTGGTGGCGGTGGCGGCGGCGGCAGCAGTAGCGGCAGCGGTG
GCACCTATTCTGGTGGTGGCGGCAGCGTCGACAGCCCTGAGGTGCTTTTT
TCCACTGGCGCGACTGCAGCTGCTTAA
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