mRNA_P-wetherbeei_contig7903.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7903.1.2
Unique NamemRNA_P-wetherbeei_contig7903.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Match: A0A7S2UA41_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA41_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.770e-33
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    4 HFTLIFNAFVFCQIFNEFNARSISSRWGVLHGLTSNPMFQAVIAFTVISQFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP 279
            HFTL+FNAFVFCQIFNEFNAR I   +     L+++PMF AVI FTVI+Q+FI+EYGGDFT+T PLT  EW  T L+GA ++P+G  MR  P
Sbjct:   78 HFTLLFNAFVFCQIFNEFNAREIGDTFNPFKNLSTSPMFLAVIIFTVIAQWFIVEYGGDFTQTAPLTFDEWKITALLGAVSIPVGYIMRQFP 169
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BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Match: A0A7R9Z8X2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z8X2_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.840e-32
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 KHFTLIFNAFVFCQIFNEFNARSISSRWGVLHGLTSNPMFQAVIAFTVISQFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP 279
            +HFT+IFNAFV+CQIFNEFNAR I  R+     LT +PMF  VI FTV++Q+ I+E+GGDFT+T PLT  EW STVL+G  ++P+G  MR +P
Sbjct:  114 RHFTVIFNAFVYCQIFNEFNARDIGDRFDPFRKLTKSPMFAIVIVFTVLAQWAIVEFGGDFTQTHPLTADEWKSTVLLGFMSIPVGFVMRQIP 206
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BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Match: D8LFB5_ECTSI (Calcium-transporting ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFB5_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.850e-32
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    1 KHFTLIFNAFVFCQIFNEFNARSISSRWGVLHGLTSNPMFQAVIAFTVISQFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP 279
            KHFT++FNAFVFCQIFNEFNARSI++ W ++ GL  NPMF  VI FT+++QF I++ GG FTRT+ L   EW +T+LMGA  LPLGV MR LP
Sbjct:  930 KHFTIVFNAFVFCQIFNEFNARSITNGWNIVKGL-KNPMFLGVIVFTLLAQFLIVQEGGSFTRTEDLNSEEWATTILMGAAVLPLGVVMRFLP 1021
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BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Match: A0A7S2RHF8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHF8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.590e-32
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 KHFTLIFNAFVFCQIFNEFNARSISSRWGVLHGLTSNPMFQAVIAFTVISQFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP 279
            +HFTLIFN FVFCQ+FNEFNARSI        GL  N MFQ V+ FTV+ Q+ I++YGGDFT+T PL  ++WI TVL+ A  LPLG+ MR +P
Sbjct:  104 EHFTLIFNVFVFCQVFNEFNARSIGDDVNAFAGLHRNIMFQVVVVFTVVLQYLIVQYGGDFTKTVPLDQTQWIRTVLLAAVTLPLGILMRFIP 196
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BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Match: A0A7S2UYB5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYB5_9STRA)

HSP 1 Score: 125 bits (314), Expect = 9.840e-32
Identity = 62/93 (66.67%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 KHFTLIFNAFVFCQIFNEFNARSISSRWGVLHGLTSNPMFQAVIAFTVISQFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP 279
            KHFT+IFNAFVFCQ+FNE NARSI +   V  GL SN +F  +IAFTV +Q+ II+YGGDFTRT PLT  EW  TVLMG   LPLGV MR+LP
Sbjct:  406 KHFTIIFNAFVFCQVFNEINARSIGNSMNVFKGLFSNIIFLGIIAFTVGAQYGIIQYGGDFTRTCPLTNMEWAETVLMGGLTLPLGVVMRILP 498
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BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Match: A0A1Z5KSV1_FISSO (Calcium-transporting ATPase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSV1_FISSO)

HSP 1 Score: 125 bits (314), Expect = 1.840e-31
Identity = 57/93 (61.29%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 KHFTLIFNAFVFCQIFNEFNARSISSRWGVLHGLTSNPMFQAVIAFTVISQFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP 279
            +HFT+IFNAFVFCQ+FNEFNAR I  R+  +  +T +P+F  VI FTV SQ+ I+EYGGDFT+T PL+V EW  TV++GA +LP+G FMRM+P
Sbjct:  920 QHFTIIFNAFVFCQVFNEFNAREIGDRFDPIRSITQSPIFLMVIFFTVASQWLIVEYGGDFTQTYPLSVDEWKYTVVLGAGSLPVGYFMRMIP 1012
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BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Match: A0A7S1CYI6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYI6_CYCTE)

HSP 1 Score: 122 bits (305), Expect = 5.130e-31
Identity = 55/92 (59.78%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    4 HFTLIFNAFVFCQIFNEFNARSISSRWGVLHGLTSNPMFQAVIAFTVISQFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP 279
            HFT++FNAFVFCQIFNEFNAR I  R+  L  ++S+PMF  VI FT ++Q+ I+EYGGDFT+T PL+  EW  TVL+GA +LP+G  MR +P
Sbjct:  312 HFTILFNAFVFCQIFNEFNAREIGDRFDPLRAMSSSPMFLLVIGFTFVAQYLIVEYGGDFTQTTPLSTYEWRITVLLGAVSLPVGFIMRQIP 403
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BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Match: A0A448ZCF4_9STRA (Calcium-transporting ATPase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCF4_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.620e-30
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    4 HFTLIFNAFVFCQIFNEFNARSISSRWGVLHGLTSNPMFQAVIAFTVISQFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP 279
            HFT+IFNAFVFCQIFNEFNAR I   +  L  L  +PMF  VI FTV+SQ+FI+EYGG+FT+T PL++ EWI TV  GA ++P+G FMR+LP
Sbjct:  894 HFTIIFNAFVFCQIFNEFNAREIGDIFNPLGALGESPMFVLVIIFTVLSQWFIVEYGGEFTQTTPLSLEEWIMTVGYGALSIPIGFFMRILP 985
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BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Match: A0A7S2Y9P9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y9P9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.620e-30
Identity = 56/93 (60.22%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    1 KHFTLIFNAFVFCQIFNEFNARSISSRWGVLHGLTSNPMFQAVIAFTVISQFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP 279
            +HFT++FNAFVFCQ+FNEFNAR I  R+  +  L+ +PMF  VI FTVISQ+FI+EYGGDFT+T PL+  EW  TV +GA +LP+G  MR++P
Sbjct:  944 RHFTILFNAFVFCQVFNEFNAREIGDRFDPIRSLSQSPMFLLVIFFTVISQWFIVEYGGDFTQTAPLSFDEWRLTVGLGAFSLPVGFLMRLIP 1036
[Close]
BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Match: A0A7S3XW72_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW72_HETAK)

HSP 1 Score: 116 bits (290), Expect = 3.410e-30
Identity = 55/94 (58.51%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 KHFTLIFNAFVFCQIFNEFNARSISSRWGV-LHGLTSNPMFQAVIAFTVISQFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP 279
            KHFTL+FNAFVFCQ+FNEFNARSI +       GL  N MF  VI FT ++Q+ +++YGG+FTRT PLT  EW  TVL+G+ ++P+GV MR LP
Sbjct:   79 KHFTLVFNAFVFCQVFNEFNARSIGNDVSAAFRGLARNGMFAGVIFFTCLTQWALVQYGGEFTRTAPLTAMEWAETVLLGSLSVPVGVLMRCLP 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7903.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UA41_9STRA6.770e-3361.96Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7R9Z8X2_9STRA1.840e-3259.14Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
D8LFB5_ECTSI2.850e-3263.44Calcium-transporting ATPase n=2 Tax=Ectocarpus Tax... [more]
A0A7S2RHF8_9STRA9.590e-3259.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UYB5_9STRA9.840e-3266.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5KSV1_FISSO1.840e-3161.29Calcium-transporting ATPase n=2 Tax=Fistulifera so... [more]
A0A7S1CYI6_CYCTE5.130e-3159.78Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A448ZCF4_9STRA1.620e-3063.04Calcium-transporting ATPase n=1 Tax=Pseudo-nitzsch... [more]
A0A7S2Y9P9_9STRA1.620e-3060.22Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3XW72_HETAK3.410e-3058.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7903contigP-wetherbeei_contig7903:798..1666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LFB5
PFAMsATP_Ca_trans_C,Cation_ATPase,Cation_ATPase_C,Cation_ATPase_N,E1-E2_ATPase,Hydrolase,Hydrolase_3
Model size279
Max annot lvl2759|Eukaryota
KEGG koko:K01537,ko:K05850
KEGG TC3.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04261,ko04925,ko04970,ko04972,map04020,map04022,map04024,map04261,map04925,map04970,map04972
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.68e-33
EggNOG OGsCOG0474@1|root,KOG0204@2759|Eukaryota
EC3.6.3.8
Descriptioncalcium-transporting ATPase activity
Cds size279
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187008.0876865-CDS-P-wetherbeei_contig7903:797..8391683187008.0876865-CDS-P-wetherbeei_contig7903:797..839Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7903 798..839 +
1683187008.0985289-CDS-P-wetherbeei_contig7903:1161..12871683187008.0985289-CDS-P-wetherbeei_contig7903:1161..1287Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7903 1162..1287 +
1683187008.1080275-CDS-P-wetherbeei_contig7903:1555..16661683187008.1080275-CDS-P-wetherbeei_contig7903:1555..1666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7903 1556..1666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7903.1.2prot_P-wetherbeei_contig7903.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7903 798..1666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7903.1.2

>prot_P-wetherbeei_contig7903.1.2 ID=prot_P-wetherbeei_contig7903.1.2|Name=mRNA_P-wetherbeei_contig7903.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
KHFTLIFNAFVFCQIFNEFNARSISSRWGVLHGLTSNPMFQAVIAFTVIS
QFFIIEYGGDFTRTDPLTVSEWISTVLMGAQALPLGVFMRMLP
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mRNA from alignment at P-wetherbeei_contig7903:798..1666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7903.1.2 ID=mRNA_P-wetherbeei_contig7903.1.2|Name=mRNA_P-wetherbeei_contig7903.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=869bp|location=Sequence derived from alignment at P-wetherbeei_contig7903:798..1666+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCACTTCACGCTGATCTTCAATGCCTTTGTCTTCTGCCAGGTGGGCGA
AAAGAAGAAAAAGAGAAGGAGAGAATCGGAAGGGGAAGGTTACGGAATGG
GAAGAGCGGAAGAAGAAAGGGAACGGGAAAGAAGCGGAAGAAGACATGAA
AGGGGCTGGTGGCTCATGATGCTGGGCGGGTGTGAGGGAACTCAACAGGT
GGTCTTTGAATCCTCTCAATCCTTTGCTGAATTATCTTCGACTGCCATTT
ACTAGAGGCAAGGTACCTGCATGACGCTCTAATGCAAGTCGGAGCTGACC
GGTTCTCGTGCTGCACGCTTACCCGTCCGGCCGCGCCTTCCGCTGCGATT
CTTCCTTCCTTAAGATCTTCAACGAGTTCAACGCGCGGAGCATCAGCAGC
CGGTGGGGGGTGCTGCACGGCCTGACGAGCAACCCTATGTTCCAGGCCGT
CATCGCCTTTACCGTCATCAGCCAGTTCTTCATCATCGAGGTCTGCAAAA
GAACCAGTGACGACTTTTCTTTTGGCACTCACCGCTCCTTTTCAGTAAAG
ACTCGTTGGCTGGTTGGCATCACCTCTTCCATTCCATCCGTGCACGTCCC
CACCAACGCTCTCTCTGCCGTCGCTGCCCGTCACTCTGATGCCGCCGTCG
GTACCCGTCGCCGGTACTGCCGTTGCTACATCTCACTTCCTGCGGCGGCC
GCTGCCGTCCTCTCCGCCCCCGGCGACCGTCGTTGCTACGATTTGCGACG
ATTTGCAGTATGGAGGCGACTTCACGCGGACGGACCCACTGACGGTGTCG
GAGTGGATCTCGACGGTGCTGATGGGCGCGCAGGCGCTGCCGCTTGGCGT
CTTCATGCGGATGCTGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7903:798..1666+

>mRNA_P-wetherbeei_contig7903.1.2 ID=mRNA_P-wetherbeei_contig7903.1.2|Name=mRNA_P-wetherbeei_contig7903.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig7903:798..1666+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCACTTCACGCTGATCTTCAATGCCTTTGTCTTCTGCCAGATCTTCAA
CGAGTTCAACGCGCGGAGCATCAGCAGCCGGTGGGGGGTGCTGCACGGCC
TGACGAGCAACCCTATGTTCCAGGCCGTCATCGCCTTTACCGTCATCAGC
CAGTTCTTCATCATCGAGTATGGAGGCGACTTCACGCGGACGGACCCACT
GACGGTGTCGGAGTGGATCTCGACGGTGCTGATGGGCGCGCAGGCGCTGC
CGCTTGGCGTCTTCATGCGGATGCTGCCG
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