mRNA_P-wetherbeei_contig7901.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7901.1.2
Unique NamemRNA_P-wetherbeei_contig7901.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Match: A0A835Z0V0_9STRA (PNPLA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V0_9STRA)

HSP 1 Score: 281 bits (719), Expect = 6.300e-82
Identity = 170/434 (39.17%), Postives = 227/434 (52.30%), Query Frame = 1
Query:    4 PTFNFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGALTAAALALDGDLSIAVEASKSKMIPLCRGSWMGPFRVTDYLTVMIPKCCNLDLARSLDQRLELCVTRM-PGFRGERVTRFDDGDHLLKALLSSAAAIPLARPVKMKGHWYIDGGFTEFFPRLNADKN--ETIYVSPLYFSDAEIRPSRYVPLWWMLLPPSCPNTIDWLYDLGYKDCLTWLARRGLIDLCCDHRHQPARPGAAGAGTGAAADRAGTGANDPAXXXXXXXXXXXXXXXXXXXXXXGAXASXRNXXXXXXXAASSRNSGNXXXXXGSRMVSGAARNDVDGGSGLVTACSDDVVACGRRPPRALHPYDMRASETSPFQRLVGYGAG----NKALDTLLLWGVPLLVKPLVLALMFLEILIGVNLTVLRAAAKEAFPSLP 1284
            P FNFSFACGGWLQ+Y+FGVA+C+ DHGLH V       Q F G SAGALTA  + +DG    AV   K  +IP C  +W GPF +T Y+     +  +LDLA  L   +   +TR+ P  R ERV+ F+  +H +  LL+S AA+PLA  + + G W IDGG ++F PR     N  ETI+VSP Y  DA+I+PSRYVP+WW  LPP    TIDWLYDLGY+D L W+ RRGL D CCDHR                      G +DP                       G+  +           A SR                 +  D+      V A S+ ++ C  RP RA HPYD+   +   FQRLVGYG G    ++ LD +L + + +L +P+ L L+ LE+L+ + +   +A  KEA P++P
Sbjct:  551 PAFNFSFACGGWLQFYMFGVAKCLTDHGLHAV----DEDQQFIGSSAGALTALGMGIDGCWDTAVNYCKEVLIPKCWATWGGPFSLTSYVRDCAIRTMDLDLATQLRGEVTAVMTRVTPVLRSERVSFFESREHCVDVLLASTAAVPLASAINVDGGWCIDGGLSDFQPRPVPKGNVAETIFVSPFYLVDADIKPSRYVPVWWAFLPPPHSGTIDWLYDLGYRDALLWMQRRGL-DFCCDHRR---------------------GHDDPVTRDDGA----------------GSLKTANPTPERSPEQAPSRR---------------GSETDIR----RVVAASEGILGCKMRPARASHPYDVSNLKGRRFQRLVGYGGGQRVIDRVLDKMLGFWLAVLWRPVALVLIVLEVLLRIVIKTAQACVKEALPAIP 923          
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Match: A0A835ZCR0_9STRA (Acyl transferase/acyl hydrolase/lysophospholipase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR0_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.280e-80
Identity = 130/240 (54.17%), Postives = 158/240 (65.83%), Query Frame = 1
Query:    4 PTFNFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGALTAAALALDGDLSIAVEASKSKMIPLCRGSWMGPFRVTDYLTVMIPKCCNLDLARSLDQ-RLELCVTRMPGFRGERVTRFDDGDHLLKALLSSAAAIPLARPVKMKGHWYIDGGFTEFFPRLNADKNETIYVSPLYFSDAEIRPSRYVPLWWMLLPPSCPNTIDWLYDLGYKDCLTWLARRGLIDLCCDHR 720
            P  NFSFACGGWLQ+YLFGVA+C+ DHGLH V     R Q F G SAGALTAA +ALD D    +   KS ++P   GS  GPFR+T Y    + +C NL  A  L    L   VT++ G R  RV+ F D  HL  A+L+SAAAIP+A  +++ G W +DGG +EF PRL+    ET+YV+P YFS A+IRPSRYVP+WW  LPP  PN+IDWLYDLGY D L W+ RR L   CC HR
Sbjct:   15 PPLNFSFACGGWLQFYLFGVAKCLTDHGLHAVG----RSQKFIGSSAGALTAAGMALDADWDAVIAYVKSTVLPQVWGSPAGPFRITRYCRDCMARCVNLGAAAELPHGELTAVVTQLSGLRALRVSAFRDAAHLADAVLASAAAIPIASAIRLDGRWCVDGGLSEFHPRLDPTLGETVYVNPFYFSHADIRPSRYVPVWWAFLPPRDPNSIDWLYDLGYSDALDWMRRRRLAH-CCKHR 249          
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Match: A0A4D9CS46_9STRA (PNPLA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CS46_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.730e-59
Identity = 115/249 (46.18%), Postives = 154/249 (61.85%), Query Frame = 1
Query:    1 LPTFNFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGALTAAALALD-GDLSIAVEASKSKMIPLCRGSWMGPFRVTDYLTVMIPKC-CNLDLARSLDQRLELCVTRMPGFRGERVTRFDDGDHLLKALLSSAAAIPLARPVKMKGHWYIDGGFTEFFPRLNADKNETIYVSPLYFSDAEIRPSRYVPLWWMLLPPSCPNTIDWLYDLGYKDCLTWLARRGLIDLCCDH-RHQPARP 738
            LPT +FSFACGGWLQ+Y+FGVA+C++DH LH  A        F+GCSAGALTA  L ++      AVE  K+  IP CRG+ +GPF +  Y+   +    C  +  +  + RL + VT +P FR  R+  F   + L+ AL++SAAA PL+ PV+ +  W IDGG ++F P L   ++ T+ V+P YFS A+IRPSRYVP WW LLPPS   T+DWLYDLG+ D L W+    L   C    R  P+ P
Sbjct:  148 LPT-SFSFACGGWLQFYMFGVAKCLKDHALHTEAR-------FSGCSAGALTALGLCVEPSSFDKAVEYCKAVCIPRCRGTLLGPFLLHKYVRGCLDYSGCLEEHWQRANGRLSVAVTGLPDFRAIRINDFRSKEELISALMASAAAFPLSPPVRRRNKWLIDGGLSDFQPVL---ESHTVTVNPFYFSQADIRPSRYVPAWWSLLPPSHSGTVDWLYDLGFCDTLRWMRSVNLESKCAARCRKDPSDP 385          
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Match: A0A7S3HS16_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HS16_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.560e-57
Identity = 105/237 (44.30%), Postives = 145/237 (61.18%), Query Frame = 1
Query:    4 PTFNFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGALTAAALALDGDLSIAVEASKSKMIPLCRGSWMGPFRVTDYLTVMIPKCCNLDLARSLDQR------LELCVTRMPGFRGERVTRFDDGDHLLKALLSSAAAIPLARPVKMKGHWYIDGGFTEFFPRLNADKNETIYVSPLYFSDAEIRPSRYVPLWWMLLPPSCPNTIDWLYDLGYKDCLTWLARRGL 696
            P  +  F CGGWLQ+YLFGVA+ +QD  L +          +AGCSAGAL A  L L+GD  +A++      +PL      G F + +Y+T     C    L    D        L++ VT++P F+GERV        L+++LL+S AA PL+  +K KG WY+DGGFT+F P ++ D   TI VSP YFSDA+IRPSRYVPLWW  +PPS P T++WLY+LG++DC+ ++  RG+
Sbjct:   18 PWESMGFCCGGWLQFYLFGVAKALQDANLDKGV-------TYAGCSAGALAACGLVLEGDFDLAIKYCNETCLPLTYSRAHGLFCLAEYVT----GCMENHLIHKFDPEKVKGEVLQIAVTKLPFFKGERVVEHLTQKDLMESLLASCAAFPLSTLIKRKGAWYVDGGFTDFQPIVDED---TITVSPFYFSDADIRPSRYVPLWWSFMPPSDPVTVEWLYNLGWEDCMKYIRSRGI 240          
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Match: A0A7S3URP2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URP2_HETAK)

HSP 1 Score: 199 bits (507), Expect = 3.920e-56
Identity = 102/233 (43.78%), Postives = 141/233 (60.52%), Query Frame = 1
Query:   13 NFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGALTAAALALDGDLSIAVEASKSKMIPLCRGSWMGPFRVTDYLTVMIPKCCNLDLARSLDQRLELCVTRMPGFRGERVTRFDDGDHLLKALLSSAAAIPLARPVK-MKGHWYIDGGFTEFFPRLNADKNETIYVSPLYFSDAEIRPSRYVPLWWMLLPPSCPNTIDWLYDLGYKDCLTWLARRGLIDLC 708
             FSFACGGWLQ+YL+GVA+C  DH LH    +        GCSAGAL A A+ + G     ++  KS +IP CR +  GPF++  Y+   +    +L      + RL +  T +P F+  RV+RF+    +   LL+S AA PL+  V+ + G  Y+DGG ++F P L+     TI V+PL+F  A+I+PSRYVP  W  LPP  P+TIDWL+DLGYKDCL+W+A+ G    C
Sbjct:   43 EFSFACGGWLQFYLYGVAKCFIDHDLHEDCKA-------VGCSAGALAATAMTIGGSFETVMDFCKSTLIPECRNNLAGPFKINSYVDRCLDAATDLSKYEQANGRLFVQTTSLPRFQSVRVSRFESALDMKTTLLASCAAFPLSPLVRRLDGGLYVDGGLSDFQPILS---KRTITVNPLWFWKADIKPSRYVPAIWAALPPKDPSTIDWLFDLGYKDCLSWMAKNGYAHTC 265          
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Match: A0A482SFQ9_9ARCH (PNPLA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFQ9_9ARCH)

HSP 1 Score: 191 bits (485), Expect = 1.800e-54
Identity = 98/231 (42.42%), Postives = 140/231 (60.61%), Query Frame = 1
Query:    4 PTFNFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGALTAAALALDGDLSIAVEASKSKMIPLCRGSWMGPFRVTDYLTVMIPKCCNLDLARSLDQRLELCVTRMPGFRGERVTRFDDGDHLLKALLSSAAAIPLARPVKMKGHWYIDGGFTEFFPRLNADKNETIYVSPLYFSDAEIRPSRYVPLWWMLLPPSCPNTIDWLYDLGYKDCLTWLARRGL 696
            P  + SFACGGWLQ+Y+FGVA+ +Q + + +    G +   + GCSAG+L A  L +DGD   AV+  K   IP   G   G F++++Y+++ +  C    L       L + VTR+P  + ERVT   + + L+  LL+S AA P A  V     WYIDGG ++F P L+   +ETI VSP YF+   I+PSRY+PLWW  LPP    T+DW+Y+LGY+DC+ +L  +GL
Sbjct:   21 PWESMSFACGGWLQFYMFGVAKALQVNNMDK----GVK---YLGCSAGSLAAVGLVIDGDFDAAVKFCKEYCIPKAYGEINGLFKLSEYVSMCMELCIMPKLKEIPPDTLHVAVTRLPFLQAERVTDHKNVEELVLTLLASCAAFPFAPIVNRNNGWYIDGGLSDFQPVLD---DETITVSPFYFTGCHIKPSRYIPLWWTFLPPKSGETVDWIYNLGYEDCVHFLKSKGL 241          
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Match: A0A6T5VQ96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VQ96_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.210e-54
Identity = 102/229 (44.54%), Postives = 136/229 (59.39%), Query Frame = 1
Query:    4 PTFNFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGALTAAALALDGDLSIAVEASKSKMIPLCRGSWMGPFRVTDYLTVMIPKCCNLDLARSLDQR----LELCVTRMPGFRGERVTRFDDGDHLLKALLSSAAAIPLARPVKMKGHWYIDGGFTEFFPRLNADKNETIYVSPLYFSDAEIRPSRYVPLWWMLLPPSCPNTIDWLYDLGYKDCLTW 678
            P  + SFACGGWLQ+Y+FGVAR IQ  GL R          + GCSAGALTA  L +DGD   AV+  K   +P   G   G  R++DY++    KC ++ +           L + VT++P  +GE +++FDD D L   LL S+AA P A+ V  KG W IDGG + F P ++   + TI VSP YFSD +I+PSRYVPLWW   PP    T+DWLY LG+ D +++
Sbjct:   27 PWKSMSFACGGWLQFYMFGVARAIQARGLERDV-------TYCGCSAGALTAVGLLVDGDFDSAVQFCKEYCLPKAYGEISGLLRLSDYVS----KCIDITVRPKYKPLPPGLLHVAVTKLPTLKGEIISKFDDFDDLKNTLLGSSAAFPFAKLVNRKGQWLIDGGLSIFQPVID---DSTITVSPFYFSDCDIKPSRYVPLWWAFFPPKSSGTVDWLYKLGWDDAMSF 241          
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Match: A0A7S4D9M8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9M8_HETAK)

HSP 1 Score: 181 bits (458), Expect = 3.180e-48
Identity = 103/245 (42.04%), Postives = 147/245 (60.00%), Query Frame = 1
Query:    1 LPTFNFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGALTAAALA-LDGDLSIAVEASKSKMIPLCRGSWM-GPFRVTDYLTVMIPKCCNLDLARSLDQRLELCVTRMPGFRGERVTRFDDGDHLLKALLSSAAAIPLARPVK-MKGHWYIDGGFTEFFPRLNADKNETIYVSPLYFSDAEIRPSRYVPLWWMLLPPSCPNTIDWLYDLGYKDCLTWLARRGLIDLCCDHRHQ 726
            L    FSFACGGWLQ+Y+FG A+ ++DHGL R    G R    AGCS+GAL A  L+ L G    A++ +K+ +IP C  S+  G F++ + +   +    +L      + +L +  T+MP F    ++ ++    L  +L++S AA P +  VK + G WYIDG ++ F PRL+     TI VSPLYFS A+I+PSRY+PL W L PP  P+T+DWL+DLGY DCL W+ +    D  C H H+
Sbjct:   24 LVNLEFSFACGGWLQFYMFGAAQALRDHGLAR----GCRA---AGCSSGALAAVGLSPLGGSWRAALDFTKTVLIPECWQSFCWGAFKLQECIDRTLDVSVDLSRFELANNKLFIQTTKMPFFEPVLLSSYESEKDLKTSLMASCAAFPFSNLVKRIDGAWYIDGIYSGFQPRLSPS---TITVSPLYFSTADIKPSRYLPLMWTLFPPKDPSTVDWLFDLGYVDCLRWMYKH---DYRCTHTHE 255          
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Match: K3WKG2_GLOUD (PNPLA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKG2_GLOUD)

HSP 1 Score: 179 bits (455), Expect = 3.840e-48
Identity = 100/235 (42.55%), Postives = 141/235 (60.00%), Query Frame = 1
Query:    1 LPTFNFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGALTAAALALDGDLSIAVEASKSKMIPLCRGSWMGPFRVTDYLTVMIPKCCNLDLARSLDQRLELCV--TRMPGFRGERVTRFDDGDHLLKALLSSAAAIPLA-RPVKMKGHWYIDGGFTEFFPRLNADKNETIYVSPLYFSDAEIRPSRYVPLWWMLLPPSCPNTIDWLYDLGYKDCLTWLARRGL 696
            +PT  FSFACGGWL+ YLFGVA+ +Q+  L R A      Q+  GCSAGALTA ALA+  D     +   + +IP    ++ GPF+V +YL   +     L     L+++  L +  T +  +   R+T F   DHL K+LL+S  A P+A  P KM G W +DGG  +F P  +    +T+ VSP Y + A+I+PSRYVP+WW +LPP     ++WL+DLGY+D LTW+ + GL
Sbjct:   29 MPT-GFSFACGGWLKMYLFGVAKALQEFELERDA------QMI-GCSAGALTATALAMKCDFDAIRDYVLTNVIPKAHATFDGPFKVREYLRDTLAATGKLHRYEMLNEKKPLTIVYTSLSAWASRRITEFTSRDHLEKSLLASCCAPPIAGMPFKMNGEWVMDGGLFDFQPTFDG---KTVTVSPFYCTGADIKPSRYVPMWWAVLPPG-ERDVEWLFDLGYEDGLTWIVKSGL 251          
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Match: A0A8K1FI08_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI08_PYTOL)

HSP 1 Score: 176 bits (446), Expect = 4.280e-47
Identity = 95/235 (40.43%), Postives = 139/235 (59.15%), Query Frame = 1
Query:    1 LPTFNFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGALTAAALALDGDLSIAVEASKSKMIPLCRGSWMGPFRVTDYLTVMIPKCCNLDLARSLDQ---RLELCVTRMPGFRGERVTRFDDGDHLLKALLSSAAAIPLA-RPVKMKGHWYIDGGFTEFFPRLNADKNETIYVSPLYFSDAEIRPSRYVPLWWMLLPPSCPNTIDWLYDLGYKDCLTWLARRG 693
            + T ++SFACGGWL+ YLFGVA+ +Q+H L + A          GCSAGAL A ALAL  D     +    +++P    +  GPF+V  YL   +    +LD    L+Q   +L +  + +  +   RVTRF+  +HL K+LL+S  A+P+A  P K+ G W +DGG  +F P  +A    T+ VS  Y + A+I+PSRYVP+WW   PPS    ++WL++LGY+D L W+A+ G
Sbjct:    1 MTTESYSFACGGWLKMYLFGVAKALQEHELEKNAR-------VIGCSAGALAATALALGCDFDAIRDFVVDEVVPKAHENLSGPFQVRSYLQATLRSVGHLDRYEELNQDTEKLSVVYSSLSAWASRRVTRFESQEHLEKSLLASCCAVPIAGMPFKLSGEWVMDGGVFDFQPVFDA---HTVTVSAFYCTAADIKPSRYVPMWWAFYPPS-QRDVEWLFELGYEDGLAWIAKTG 224          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7901.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z0V0_9STRA6.300e-8239.17PNPLA domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835ZCR0_9STRA1.280e-8054.17Acyl transferase/acyl hydrolase/lysophospholipase ... [more]
A0A4D9CS46_9STRA2.730e-5946.18PNPLA domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S3HS16_9STRA1.560e-5744.30Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3URP2_HETAK3.920e-5643.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A482SFQ9_9ARCH1.800e-5442.42PNPLA domain-containing protein n=1 Tax=archaeon T... [more]
A0A6T5VQ96_9STRA2.210e-5444.54Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S4D9M8_HETAK3.180e-4842.04Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
K3WKG2_GLOUD3.840e-4842.55PNPLA domain-containing protein n=1 Tax=Globispora... [more]
A0A8K1FI08_PYTOL4.280e-4740.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7901contigP-wetherbeei_contig7901:1051..2598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T005454
PFAMsPatatin
Model size1293
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.3e-49
EggNOG OGsKOG3773@1|root,KOG3773@2759|Eukaryota,1MBBG@121069|Pythiales
DescriptionPatatin-like phospholipase. Source PGD
Cds size1293
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187008.019957-CDS-P-wetherbeei_contig7901:1050..15231683187008.019957-CDS-P-wetherbeei_contig7901:1050..1523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7901 1051..1523 +
1683187008.0292888-CDS-P-wetherbeei_contig7901:1778..25981683187008.0292888-CDS-P-wetherbeei_contig7901:1778..2598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7901 1779..2598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7901.1.2prot_P-wetherbeei_contig7901.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7901 1051..2598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7901.1.2

>prot_P-wetherbeei_contig7901.1.2 ID=prot_P-wetherbeei_contig7901.1.2|Name=mRNA_P-wetherbeei_contig7901.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=431bp
LPTFNFSFACGGWLQYYLFGVARCIQDHGLHRVAFSGPRKQIFAGCSAGA
LTAAALALDGDLSIAVEASKSKMIPLCRGSWMGPFRVTDYLTVMIPKCCN
LDLARSLDQRLELCVTRMPGFRGERVTRFDDGDHLLKALLSSAAAIPLAR
PVKMKGHWYIDGGFTEFFPRLNADKNETIYVSPLYFSDAEIRPSRYVPLW
WMLLPPSCPNTIDWLYDLGYKDCLTWLARRGLIDLCCDHRHQPARPGAAG
AGTGAAADRAGTGANDPAATGAETGATADGGAAGGTSDATGAAASARNAT
DGGTGAASSRNSGNSGGGGGSRMVSGAARNDVDGGSGLVTACSDDVVACG
RRPPRALHPYDMRASETSPFQRLVGYGAGNKALDTLLLWGVPLLVKPLVL
ALMFLEILIGVNLTVLRAAAKEAFPSLPYLL
back to top

mRNA from alignment at P-wetherbeei_contig7901:1051..2598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7901.1.2 ID=mRNA_P-wetherbeei_contig7901.1.2|Name=mRNA_P-wetherbeei_contig7901.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1548bp|location=Sequence derived from alignment at P-wetherbeei_contig7901:1051..2598+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCCACCTTCAACTTCTCGTTTGCGTGCGGAGGGTGGCTGCAGTACTA CCTTTTTGGTGTCGCCCGCTGCATCCAGGATCACGGCCTGCACCGCGTCG CCTTCTCCGGGCCTCGCAAGCAGATTTTCGCGGGCTGTAGCGCGGGTGCC TTGACGGCCGCGGCGCTAGCCCTCGATGGCGACCTCAGCATCGCCGTGGA GGCCAGCAAGAGCAAGATGATCCCGCTCTGCCGCGGCAGCTGGATGGGGC CGTTCCGCGTGACCGATTACCTCACGGTCATGATTCCGAAGTGTTGCAAC CTCGACCTGGCGCGGTCGCTCGACCAGCGGCTTGAGCTGTGCGTGACACG CATGCCGGGCTTTCGCGGCGAGCGAGTGACGCGCTTCGACGACGGAGACC ACCTGCTGAAGGCGCTGCTGTCGTCGGCGGCCGCCATCCCGCTGGCCCGT CCTGTCAAGATGAAGGGGCACTGGTGAGTCAAGGGAGGGAAGGGAAGGAA GGAAAGAGGAGATAAGTTAATGTTTGCGACAATCCATCTTGAGTTTTCCA AAGGAGAGCAAAGAGTTCAGTTCTCGCGCGCTGTCAGTCCGTTATGGCCG CCCTGCAAATCCTAGCACTGTAACGAGCGTGTCGGTTCCAGTTTCCAGTT CCCGATCTGAACTTGGATCCAACCAATCGACCAACTGCTTCTGTGGTCCG CCGCCTGCCACCCACCTCTCACCGCCAGGTACATAGACGGCGGATTCACG GAGTTCTTCCCGCGGCTGAATGCCGACAAGAACGAGACCATCTATGTCAG CCCGCTCTATTTCTCTGACGCCGAGATCCGACCGTCGCGGTACGTACCGC TGTGGTGGATGCTGCTGCCGCCGTCGTGCCCCAACACCATCGACTGGCTC TACGATTTGGGCTACAAGGATTGCCTCACCTGGCTTGCCCGACGCGGCCT CATCGACCTGTGCTGCGACCACCGCCACCAGCCGGCCAGGCCCGGCGCTG CTGGAGCAGGAACAGGAGCCGCCGCTGACAGAGCCGGGACAGGAGCAAAT GACCCTGCTGCCACCGGAGCTGAGACTGGCGCCACCGCAGATGGTGGAGC AGCCGGGGGCACAAGCGACGCCACTGGTGCAGCGGCTAGTGCCCGAAACG CCACCGACGGTGGCACCGGCGCCGCCTCGAGCAGGAACAGCGGTAACAGC GGCGGTGGCGGCGGCAGCAGAATGGTTAGCGGCGCGGCTAGAAACGACGT CGACGGCGGCAGCGGTCTTGTCACCGCCTGCAGCGACGACGTGGTGGCGT GCGGGCGGCGGCCGCCGCGTGCGCTGCACCCCTACGACATGCGTGCCTCC GAGACGTCGCCCTTCCAGCGGCTGGTCGGTTACGGCGCCGGCAACAAGGC GCTCGACACGCTGCTGCTCTGGGGAGTGCCGCTCCTCGTCAAGCCGCTGG TGCTGGCCCTCATGTTCCTGGAGATTCTCATCGGCGTCAACTTGACGGTG CTGCGCGCCGCCGCAAAAGAAGCGTTCCCGTCGCTGCCCTACCTACTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7901:1051..2598+

>mRNA_P-wetherbeei_contig7901.1.2 ID=mRNA_P-wetherbeei_contig7901.1.2|Name=mRNA_P-wetherbeei_contig7901.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1293bp|location=Sequence derived from alignment at P-wetherbeei_contig7901:1051..2598+ (Phaeothamnion wetherbeei SAG_119_79)
CTCCCCACCTTCAACTTCTCGTTTGCGTGCGGAGGGTGGCTGCAGTACTA
CCTTTTTGGTGTCGCCCGCTGCATCCAGGATCACGGCCTGCACCGCGTCG
CCTTCTCCGGGCCTCGCAAGCAGATTTTCGCGGGCTGTAGCGCGGGTGCC
TTGACGGCCGCGGCGCTAGCCCTCGATGGCGACCTCAGCATCGCCGTGGA
GGCCAGCAAGAGCAAGATGATCCCGCTCTGCCGCGGCAGCTGGATGGGGC
CGTTCCGCGTGACCGATTACCTCACGGTCATGATTCCGAAGTGTTGCAAC
CTCGACCTGGCGCGGTCGCTCGACCAGCGGCTTGAGCTGTGCGTGACACG
CATGCCGGGCTTTCGCGGCGAGCGAGTGACGCGCTTCGACGACGGAGACC
ACCTGCTGAAGGCGCTGCTGTCGTCGGCGGCCGCCATCCCGCTGGCCCGT
CCTGTCAAGATGAAGGGGCACTGGTACATAGACGGCGGATTCACGGAGTT
CTTCCCGCGGCTGAATGCCGACAAGAACGAGACCATCTATGTCAGCCCGC
TCTATTTCTCTGACGCCGAGATCCGACCGTCGCGGTACGTACCGCTGTGG
TGGATGCTGCTGCCGCCGTCGTGCCCCAACACCATCGACTGGCTCTACGA
TTTGGGCTACAAGGATTGCCTCACCTGGCTTGCCCGACGCGGCCTCATCG
ACCTGTGCTGCGACCACCGCCACCAGCCGGCCAGGCCCGGCGCTGCTGGA
GCAGGAACAGGAGCCGCCGCTGACAGAGCCGGGACAGGAGCAAATGACCC
TGCTGCCACCGGAGCTGAGACTGGCGCCACCGCAGATGGTGGAGCAGCCG
GGGGCACAAGCGACGCCACTGGTGCAGCGGCTAGTGCCCGAAACGCCACC
GACGGTGGCACCGGCGCCGCCTCGAGCAGGAACAGCGGTAACAGCGGCGG
TGGCGGCGGCAGCAGAATGGTTAGCGGCGCGGCTAGAAACGACGTCGACG
GCGGCAGCGGTCTTGTCACCGCCTGCAGCGACGACGTGGTGGCGTGCGGG
CGGCGGCCGCCGCGTGCGCTGCACCCCTACGACATGCGTGCCTCCGAGAC
GTCGCCCTTCCAGCGGCTGGTCGGTTACGGCGCCGGCAACAAGGCGCTCG
ACACGCTGCTGCTCTGGGGAGTGCCGCTCCTCGTCAAGCCGCTGGTGCTG
GCCCTCATGTTCCTGGAGATTCTCATCGGCGTCAACTTGACGGTGCTGCG
CGCCGCCGCAAAAGAAGCGTTCCCGTCGCTGCCCTACCTACTC
back to top