mRNA_P-wetherbeei_contig790.6.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig790.6.3
Unique NamemRNA_P-wetherbeei_contig790.6.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig790.6.3 vs. uniprot
Match: A0A836CFQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ5_9STRA)

HSP 1 Score: 290 bits (743), Expect = 7.680e-95
Identity = 144/219 (65.75%), Postives = 182/219 (83.11%), Query Frame = 1
Query:    1 KEHEAAIHETMSSFPEIRRRRRKDLYRVFKLLNEKDAARERRQKVVFDFFNQHVSRENSFQTGEIYHAAHELLVLVDEFRELLDRLFSWCDLCLPAQEQAFAESHRQKIQRFQTQLVAEMKRSNSARSQVTQLLSARVDTLRQLLSTKDIKPENLEAWEKAHHDLLTLQESNSYLSMGRLWEQILESYLLLFNYWKVNLKSENFVFGDNGKSSGNDYFA 657
            K +E  IH+TM+ F ++R+ R++++Y+VFKL++EKD ARERRQKV F+ F  ++SR NSFQTG +Y   HE+LV +DEFRELLD+LFSWCDLCLPA EQ+FAESHR KIQ+FQ Q+V EMKR+NSAR+QV   L+ RV+TLRQL +TK++   NLE WEKAH +LLTLQESN+YL MGR WEQ+LESYLLL+NYW +NLK ++ VFGD G+SSGNDYFA
Sbjct:   43 KVYEKNIHQTMTKFLDLRQSRKEEMYKVFKLISEKDHARERRQKV-FEHFRDNISRVNSFQTGTVYEVTHEVLVFIDEFRELLDKLFSWCDLCLPANEQSFAESHRLKIQKFQMQIVNEMKRTNSARTQVNLHLTQRVETLRQLFTTKEVAAVNLEGWEKAHSELLTLQESNAYLVMGRSWEQLLESYLLLYNYWVLNLKHDSIVFGDAGRSSGNDYFA 260          
BLAST of mRNA_P-wetherbeei_contig790.6.3 vs. uniprot
Match: D8LE75_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE75_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 1.570e-92
Identity = 145/219 (66.21%), Postives = 173/219 (79.00%), Query Frame = 1
Query:    1 KEHEAAIHETMSSFPEIRRRRRKDLYRVFKLLNEKDAARERRQKVVFDFFNQHVSRENSFQTGEIYHAAHELLVLVDEFRELLDRLFSWCDLCLPAQEQAFAESHRQKIQRFQTQLVAEMKRSNSARSQVTQLLSARVDTLRQLLSTKDIKPENLEAWEKAHHDLLTLQESNSYLSMGRLWEQILESYLLLFNYWKVNLKSENFVFGDNGKSSGNDYFA 657
            K +E  +H+TM+ FPE+R++R+ D YRVFKL++EKD ARERR+KV F++FN  +SR+N+FQTGEIY  + ELL+LVDEFRELLDRLFSWCDLCLP  +QAFAESHRQKIQ+FQ Q+V EMKRSNSARSQ                   ++   NLEAWEKAHHDLLT QE+N+YL MGR WEQILES LLL+NYWKVNLK +N VFGD GKS+GNDYFA
Sbjct:   13 KVYEKNLHDTMAEFPELRKQRKIDYYRVFKLMDEKDNARERRRKV-FEYFNGAISRQNNFQTGEIYEVSRELLMLVDEFRELLDRLFSWCDLCLPGNDQAFAESHRQKIQKFQVQIVQEMKRSNSARSQ-------------------EVDGGNLEAWEKAHHDLLTSQEANAYLQMGRSWEQILESLLLLYNYWKVNLKDDNIVFGDAGKSTGNDYFA 211          
BLAST of mRNA_P-wetherbeei_contig790.6.3 vs. uniprot
Match: A0A835YMR0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMR0_9STRA)

HSP 1 Score: 199 bits (505), Expect = 5.240e-59
Identity = 104/217 (47.93%), Postives = 143/217 (65.90%), Query Frame = 1
Query:    7 HEAAIHETMSSFPEIRRRRRKDLYRVFKLLNEKDAARERRQKVVFDFFNQHVSRENSFQTGEIYHAAHELLVLVDEFRELLDRLFSWCDLCLPAQEQAFAESHRQKIQRFQTQLVAEMKRSNSARSQVTQLLSARVDTLRQLLSTKDIKPENLEAWEKAHHDLLTLQESNSYLSMGRLWEQILESYLLLFNYWKVNLKSENFVFGDNGKSS-GNDYF 654
            +E  IHETM +FP +R  RR+D  R   L    D AR+RR KV F FFN HVS+ NSFQT E++  + E+L ++DE RE L+ + +WCDLCLPA E AFAE+HR K+Q FQ  L   +    ++ ++V   L  R  TL+ L +TKD+ PEN   W +AH DLL   E+N+YL + ++WE++LE Y+L +NYWK N+K  +  FG+ GKS  G+DYF
Sbjct:   37 YETNIHETMKTFPTLRECRRQDYNRCITLFALADHARDRRNKV-FAFFNSHVSQPNSFQTDEVFRVSEEVLSVLDESREQLELVTNWCDLCLPANETAFAEAHRLKLQDFQDYLSGGVTGIVNSINEVNSQLEKRAQTLQLLFTTKDVLPENRTGWIRAHRDLLVHSETNAYLQVAKIWEKVLEDYVLYYNYWKTNIKDGDLAFGNQGKSERGSDYF 252          
BLAST of mRNA_P-wetherbeei_contig790.6.3 vs. uniprot
Match: D7G572_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G572_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 4.160e-57
Identity = 104/218 (47.71%), Postives = 136/218 (62.39%), Query Frame = 1
Query:    1 KEHEAAIHETMSSFPEIRRRRRKDLYRVFKLLNEKDAARERRQKVVFDFFNQHVSRENSFQTGEIYHAAHELLVLVDEFRELLDRLFSWCDLCLPAQEQAFAESHRQKIQRFQTQLVAEMKRSNSARSQVTQLLSARVDTLRQLLSTKDIKPENLEAWEKAHHDLLTLQESNSYLSMGRLWEQILESYLLLFNYWKVNLKSENFVFGDNGKSSGNDYF 654
            K +EA IH+ M   P  R RR+KD  RV  L      A++RR KV F++F++ V++ N FQ  E+Y  + +LL ++DE RE L+ L +WCDLCLPA EQAFAE+HR KIQ FQ  L A +    S  + +   L  R  TLR L STKD+ PEN E W + H ++L   E N+YLS    WE++LE YLL +NY+K+NLK    VF   GK  GNDYF
Sbjct:  103 KVYEANIHDMMKQMPAQRERRKKDFERVLTLFASDSLAKDRRNKV-FEYFDKAVTKANCFQVKEVYSVSQDLLSVLDEARETLELLVNWCDLCLPANEQAFAEAHRIKIQHFQDYLSAGLSSVVSETADINTQLDKRAQTLRSLFSTKDVLPENQEGWYRLHREMLVHHEVNAYLSAATSWEKLLEDYLLYYNYYKMNLKDSTIVFQSEGKGGGNDYF 319          
BLAST of mRNA_P-wetherbeei_contig790.6.3 vs. uniprot
Match: A0A836C7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7X8_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.400e-50
Identity = 97/219 (44.29%), Postives = 137/219 (62.56%), Query Frame = 1
Query:    1 KEHEAAIHETMSSFPEIRRRRRKDLYRVFKLLNEKDAARERRQKVVFDFFNQHVSRENSFQTGEIYHAAHELLVLVDEFRELLDRLFSWCDLCLPAQEQAFAESHRQKIQRFQTQLVAEMKRSNSARSQVTQLLSARVDTLRQLLSTKDIKPENLEAWEKAHHDLLTLQESNSYLSMGRLWEQILESYLLLFNYWKVNLKSENFVFGDNGKSS-GNDYF 654
            K +E  IHETM   P++R    +D  +   L +  D+A++RR KV F FF+ +++   S+QT +++  + E+L ++DE RELL+ L +WCDLCLPA E AFAE+ R KIQ FQ  L   +    ++ ++V   L  R  TL+ L +TKD+ PEN   W KAH DLL   E+N+YL M ++WE++LE Y+L FNYWK NLK  +  F   GK   G DYF
Sbjct:   26 KVYERNIHETMQELPKLRDACEQDYTKCVTLFSTDDSAKDRRTKV-FAFFDANITEATSYQTDQVFKLSEEVLSVLDECRELLELLMNWCDLCLPANETAFAEALRIKIQDFQEYLSGGVTGLANSTNEVNLQLEKRARTLQLLFTTKDVLPENRAGWIKAHRDLLVHCETNAYLRMAKIWEKVLEDYVLYFNYWKTNLKDGDLAFAHMGKGERGGDYF 243          
BLAST of mRNA_P-wetherbeei_contig790.6.3 vs. uniprot
Match: D8LEA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA5_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.970e-50
Identity = 94/218 (43.12%), Postives = 136/218 (62.39%), Query Frame = 1
Query:    1 KEHEAAIHETMSSFPEIRRRRRKDLYRVFKLLNEKDAARERRQKVVFDFFNQHVSRENSFQTGEIYHAAHELLVLVDEFRELLDRLFSWCDLCLPAQEQAFAESHRQKIQRFQTQLVAEMKRSNSARSQVTQLLSARVDTLRQLLSTKDIKPENLEAWEKAHHDLLTLQESNSYLSMGRLWEQILESYLLLFNYWKVNLKSENFVFGDNGKSSGNDYF 654
            K +E  +HETM+  P +R +R  D   +F L++  D AR RR+KV+ DFF    ++EN  + G+I   +H+ LVL+DE REL+DRL SW  +CLPA +   + SHR+K++ F+ +L  E+K     RS VT   S RV T+R +  TKD+   NL  WE AHH+LL +QE+ +YLSM R W   ++S LL++ YWKVNLK  +  F      +G+ +F
Sbjct:   27 KTYERNVHETMAGLPGLREKRLADYESIFTLVDANDTARARRRKVL-DFFMTR-TKENLNRAGQIQECSHQCLVLIDELRELMDRLISWLTMCLPANDHPLSVSHRRKLKLFKGRLRNEVKILEGLRSGVTSAHSGRVHTIRSMFLTKDVAENNLLGWETAHHELLVMQETEAYLSMCRFWMSTMDSALLVYKYWKVNLKDADIAFATGNNGNGHHHF 242          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig790.6.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CFQ5_9STRA7.680e-9565.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LE75_ECTSI1.570e-9266.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMR0_9STRA5.240e-5947.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G572_ECTSI4.160e-5747.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C7X8_9STRA1.400e-5044.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LEA5_ECTSI1.970e-5043.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig790contigP-wetherbeei_contig790:6145..8179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size959
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001190.1
Cds size630
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig790.6.3prot_P-wetherbeei_contig790.6.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig790 6444..8149 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.8658574-UTR-P-wetherbeei_contig790:6144..64431683187007.8658574-UTR-P-wetherbeei_contig790:6144..6443Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig790 6145..6443 -
1683187007.923807-UTR-P-wetherbeei_contig790:8149..81791683187007.923807-UTR-P-wetherbeei_contig790:8149..8179Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig790 8150..8179 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.8798404-CDS-P-wetherbeei_contig790:6443..65241683187007.8798404-CDS-P-wetherbeei_contig790:6443..6524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig790 6444..6524 -
1683187007.8880177-CDS-P-wetherbeei_contig790:6816..68881683187007.8880177-CDS-P-wetherbeei_contig790:6816..6888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig790 6817..6888 -
1683187007.8961549-CDS-P-wetherbeei_contig790:7200..74101683187007.8961549-CDS-P-wetherbeei_contig790:7200..7410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig790 7201..7410 -
1683187007.9042506-CDS-P-wetherbeei_contig790:7698..78601683187007.9042506-CDS-P-wetherbeei_contig790:7698..7860Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig790 7699..7860 -
1683187007.9155262-CDS-P-wetherbeei_contig790:8044..81491683187007.9155262-CDS-P-wetherbeei_contig790:8044..8149Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig790 8045..8149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig790.6.3

>prot_P-wetherbeei_contig790.6.3 ID=prot_P-wetherbeei_contig790.6.3|Name=mRNA_P-wetherbeei_contig790.6.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=210bp
MSSFPEIRRRRRKDLYRVFKLLNEKDAARERRQKVVFDFFNQHVSRENSF
QTGEIYHAAHELLVLVDEFRELLDRLFSWCDLCLPAQEQAFAESHRQKIQ
RFQTQLVAEMKRSNSARSQVTQLLSARVDTLRQLLSTKDIKPENLEAWEK
AHHDLLTLQESNSYLSMGRLWEQILESYLLLFNYWKVNLKSENFVFGDNG
KSSGNDYFA*
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mRNA from alignment at P-wetherbeei_contig790:6145..8179-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig790.6.3 ID=mRNA_P-wetherbeei_contig790.6.3|Name=mRNA_P-wetherbeei_contig790.6.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2035bp|location=Sequence derived from alignment at P-wetherbeei_contig790:6145..8179- (Phaeothamnion wetherbeei SAG_119_79)
AAGGAGCATGAGGCTGCGATTCACGAGACGATGTCGAGCTTCCCAGAGAT CCGTCGGCGACGGCGAAAGGACTTGTACCGCGTGTTCAAGCTCCTGAACG AGAAGGACGCGGCCCGGGAGCGACGCCAAAAGGTCGTTCTGCAGCGTGCT TTTGGCCTCAATTTGAAGCTCGAGCACTCCCACTCGACGAAGTCATAGAC ATGGATTATTTAAGGAACCTCTCTTATACAGACCCTCCCCGGCCAAACTC ACAACCACCTCTGTCCTTTTCTGTCATTCCCCTCCAATTTCGGAAACGTG TGCCCGCCTGTCTGGCCAGGTGTTTGACTTCTTCAACCAGCACGTGTCAC GCGAGAACTCCTTCCAGACGGGGGAGATCTACCACGCGGCCCACGAGCTG CTGGTACTGGTGGACGAGTTCCGCGAGCTCCTCGACCGCCTCTTCTCCTG GTGCGACCTCTGTCTGCCCGCGCAGGAACAGGTTGGTCGGTGGGTGATCG ACCCGGGGTTTGAGGTTCGGAGTCCAATGTTCGGATGGGCTCTACGATTT CGTCTACAGTTTCTCGGCGTGGAACCTGGAGCCTCCACGAGGTTCATCTG GGGCCCCTTTTTTGTCTTGGGGGTTTCCCATTTGTCATGCCGCGTCTTGT CGCTAGGCTTTCTTCTCAAGGAACCCCCACCATTGCATGCTGTGTGGCTG GCTCTTCATGTTCTGATGAAGTAGCGCTTGCCGCCATGACACCGGCATCA ATGCTGTCGGCCCCCACAGGCGTTCGCGGAGTCGCACCGGCAAAAGATCC AGCGGTTCCAGACACAGCTGGTGGCGGAGATGAAGCGCAGCAACTCTGCG CGGTCGCAGGTGACGCAGCTGCTGTCAGCGCGGGTAGACACGCTCCGACA GCTGCTGTCCACGAAAGACATCAAGCCCGAGAACCTAGAGGCCTGGGAGA AAGCTCACCACGACCTCCTCACCCTGCAGGTGACTCCAGAAGGCCGGAAA TTTTTGATGAAGAAATAGCTGGCAAGAGATACGATTGATTGGGGAAGTGG AATGGGCCGGAGCCTCAGCCACCTTTGTACCGTCGCCGCTTTGTCTCCGT GTTCCTTTCAAAAGGAAACCGCAAGTGTCTGAATCCCCATACGGTTTCGT TTTCCTCCGGTCCATTTTGATTGATTGTGTCAAGTGCGCCAAATGCTAGC GGGAGGTGTTAGTTTGCATTGCAAATGCTGATGCCGTTTGGCTTTTTGTT TCATGTGCTTGCTCCGTCTGCCGCTGTTTCCCGTATTACAGGAGTCCAAC AGCTACCTGTCGATGGGTCGGCTGTGGGAGCAGATTTTGGAGTCGTACCT GCTGCTATTCAACGTGAGTGCTAAACCGGTCTTTATAGATCTGTGTTTTG CACCACCTGCTCTGTAGTCGTTGCTGTGGATGGATACTCACTGCGTTAGA CTCGGCTGGCATCTCCTCCTTAATCCCATTTAACTAAATTCGGGCTTGCA AGGCAGCGAGAATTGTCTTCCAAGTGATAAAAGGAGAATTGGCGTCCGTA GTGGGTTAACCCTGCTCGAACTTCCGAACCGCTTCCGTGTACCCTTTCCC GTCGCGTTCTACCCCGGTACGCCAACCGGTGCTGTGCCAATTTCACCTTT GGCAGTACTGGAAGGTGAACCTCAAGTCGGAGAACTTCGTCTTCGGAGAC AACGGCAAGTCCTCTGGCAACGATTACTTCGCTTGAGGACTAGGTAGCGC AATAGGAAGAGACTCGGCGGGTTCTTGTTCATTGTATTCGCTGTCGTCAC TGTCAGGCGTGTGGGAGGAGTGTTGTAACGGCGGAAGATACTCGATGCCG GTTGCTGCGGGGACGCCGCGGCTGCTGCGAGTTGCGGTACGCTGGCCAGG GCAAGACCGCGTCACAGCGTGCGGCATCGGACGCACTACGTGGGGCAGCC GGGCAGCCAGCCAGCCGCAGCTCGGGCCTAGGCAGAAGGTCCTGTAGAAC GTCATGTAAATTTTTATAGTGTGTGCGTGTCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig790:6145..8179-

>mRNA_P-wetherbeei_contig790.6.3 ID=mRNA_P-wetherbeei_contig790.6.3|Name=mRNA_P-wetherbeei_contig790.6.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=630bp|location=Sequence derived from alignment at P-wetherbeei_contig790:6145..8179- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGAGCTTCCCAGAGATCCGTCGGCGACGGCGAAAGGACTTGTACCG
CGTGTTCAAGCTCCTGAACGAGAAGGACGCGGCCCGGGAGCGACGCCAAA
AGGTCGTGTTTGACTTCTTCAACCAGCACGTGTCACGCGAGAACTCCTTC
CAGACGGGGGAGATCTACCACGCGGCCCACGAGCTGCTGGTACTGGTGGA
CGAGTTCCGCGAGCTCCTCGACCGCCTCTTCTCCTGGTGCGACCTCTGTC
TGCCCGCGCAGGAACAGGCGTTCGCGGAGTCGCACCGGCAAAAGATCCAG
CGGTTCCAGACACAGCTGGTGGCGGAGATGAAGCGCAGCAACTCTGCGCG
GTCGCAGGTGACGCAGCTGCTGTCAGCGCGGGTAGACACGCTCCGACAGC
TGCTGTCCACGAAAGACATCAAGCCCGAGAACCTAGAGGCCTGGGAGAAA
GCTCACCACGACCTCCTCACCCTGCAGGAGTCCAACAGCTACCTGTCGAT
GGGTCGGCTGTGGGAGCAGATTTTGGAGTCGTACCTGCTGCTATTCAACT
ACTGGAAGGTGAACCTCAAGTCGGAGAACTTCGTCTTCGGAGACAACGGC
AAGTCCTCTGGCAACGATTACTTCGCTTGA
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