mRNA_P-wetherbeei_contig7898.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7898.1.1
Unique NamemRNA_P-wetherbeei_contig7898.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7898.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7898contigP-wetherbeei_contig7898:3..1647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1646
Hectar predicted targeting categoryother localisation
Exons1
Cds size1263
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.376982-CDS-P-wetherbeei_contig7898:2..12651683187007.376982-CDS-P-wetherbeei_contig7898:2..1265Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7898 3..1265 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.3861027-UTR-P-wetherbeei_contig7898:1265..16471683187007.3861027-UTR-P-wetherbeei_contig7898:1265..1647Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7898 1266..1647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7898.1.1prot_P-wetherbeei_contig7898.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7898 3..1265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7898.1.1

>prot_P-wetherbeei_contig7898.1.1 ID=prot_P-wetherbeei_contig7898.1.1|Name=mRNA_P-wetherbeei_contig7898.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=421bp
MSSRDVEEIDESLATAAQRMAVLRASAEAVRKTLLAAAAAAASSSEPPAL
AAALREACDALTLGETHSSLALKRVLAAPSLFQAARDLRFFVGSALAAFA
SHVAWARLVAEQAGTTLRRIAPLACDSGWAAAPPLRVDAALDGDYGGDGG
SGGLTATVQLFDADLPTIVPPRAPSLRLTVLLRGDLQALDRLAGLVDRRM
SGGDRGGGCSGGGRIGDVSGCGGCGGGGGSGGRIGGRIGGRIGGDGEGDG
GSEDGGAGGGALPGAALAAVTACRSQWSRMRPGTLQVAIRLSTPAPLCVA
WVRHNLGDASATQAKSPGRRGAAKHPRRNAPPTSRPTAAADLCSGANAFG
SGDSGDGGDIGDGASDSPDGGGGGGVDAGREAVVLAAAGMDHLIGLNFSF
GVDHGIAASPKGVASATTEVS
back to top

mRNA from alignment at P-wetherbeei_contig7898:3..1647-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7898.1.1 ID=mRNA_P-wetherbeei_contig7898.1.1|Name=mRNA_P-wetherbeei_contig7898.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1645bp|location=Sequence derived from alignment at P-wetherbeei_contig7898:3..1647- (Phaeothamnion wetherbeei SAG_119_79)
AGCGGGAGGAAGGCAGAAGGAGACACACGCCTTTCTGCCTCATCAGGCGC
ACTCCTAAAAGAAGTATATCCCTGCCGAAGGGCAGGATTCCAAGCGAGAG
ATTTTTGTGACAGGTTTTCGAAAAGATACACCTGGACGAGAATCGCGGAT
TTTACACGCCGTGGCTTCCTCCTTTTACGCGCCCTTGCCGACCGGACCGC
TCTGCGCTTCTCGCAGAGCTCCAGGTGCAAGGCTAGAAAGAGAAAGGAAA
CGGCAGGCACGGAGGAGAGGGAGGTATAACCTGGTGCGCGCTTGTCTTCG
GCCGCGACTCCGCAGTTGCGGTGCCGGTCCTACCTTTCTCTAAGGGCACT
TGACCTCATTCCCGGGAGCTAAAAGGAGTAAAATGTCCTCTCGGGATGTT
GAAGAGATTGATGAGAGCCTGGCGACGGCGGCGCAGCGAATGGCCGTCCT
TCGTGCGAGCGCGGAAGCCGTACGCAAAACTCTTTTGGCGGCGGCAGCGG
CAGCAGCGTCATCCTCTGAGCCCCCGGCTCTTGCTGCGGCTCTCCGCGAA
GCGTGCGACGCGCTGACTCTCGGCGAAACTCACAGCTCGCTGGCACTGAA
ACGCGTATTAGCTGCGCCGTCCCTCTTCCAGGCCGCCAGGGATCTTCGCT
TCTTCGTCGGGTCCGCCCTCGCCGCCTTTGCTAGCCACGTCGCCTGGGCA
AGACTTGTGGCAGAGCAGGCGGGAACGACGCTCCGGCGGATCGCGCCCCT
CGCCTGCGACTCCGGCTGGGCCGCTGCCCCGCCCCTCCGCGTCGACGCCG
CGCTTGACGGTGACTACGGCGGCGACGGCGGAAGCGGCGGGCTAACGGCG
ACCGTTCAGCTTTTCGATGCTGACTTGCCTACGATCGTCCCACCGCGTGC
GCCATCGCTGCGCCTGACCGTGCTTCTCCGCGGAGACTTACAGGCGCTGG
ACCGGCTGGCCGGGCTTGTCGATCGCAGGATGAGTGGCGGCGACCGCGGC
GGCGGCTGCAGCGGCGGCGGAAGGATTGGCGACGTCAGCGGCTGCGGCGG
CTGCGGCGGCGGCGGCGGCAGCGGCGGCAGGATTGGCGGCAGAATTGGCG
GCAGAATTGGCGGAGACGGCGAAGGTGATGGCGGCAGCGAAGACGGCGGC
GCCGGTGGCGGGGCGCTGCCTGGAGCGGCCCTCGCCGCGGTCACGGCATG
CAGGTCGCAGTGGTCCCGGATGCGGCCCGGAACACTGCAGGTCGCCATCC
GGCTGTCCACACCCGCGCCCCTCTGCGTCGCCTGGGTACGGCACAACCTC
GGTGACGCTTCGGCAACGCAGGCTAAGTCGCCGGGCCGCCGCGGCGCCGC
GAAGCACCCGCGCAGGAACGCGCCACCTACTTCCCGGCCCACAGCGGCGG
CGGATCTTTGTTCGGGGGCGAACGCTTTCGGCAGCGGCGACTCCGGTGAT
GGGGGCGACATCGGCGATGGGGCCAGCGACAGCCCCGATGGCGGTGGCGG
CGGCGGCGTGGACGCCGGCAGAGAGGCGGTAGTGCTAGCGGCGGCAGGAA
TGGACCACCTGATTGGCCTAAACTTCTCGTTTGGGGTAGATCACGGCATT
GCAGCGTCGCCGAAGGGCGTGGCGTCGGCGACGACGGAGGTTTCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7898:3..1647-

>mRNA_P-wetherbeei_contig7898.1.1 ID=mRNA_P-wetherbeei_contig7898.1.1|Name=mRNA_P-wetherbeei_contig7898.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1263bp|location=Sequence derived from alignment at P-wetherbeei_contig7898:3..1647- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTCTCGGGATGTTGAAGAGATTGATGAGAGCCTGGCGACGGCGGC
GCAGCGAATGGCCGTCCTTCGTGCGAGCGCGGAAGCCGTACGCAAAACTC
TTTTGGCGGCGGCAGCGGCAGCAGCGTCATCCTCTGAGCCCCCGGCTCTT
GCTGCGGCTCTCCGCGAAGCGTGCGACGCGCTGACTCTCGGCGAAACTCA
CAGCTCGCTGGCACTGAAACGCGTATTAGCTGCGCCGTCCCTCTTCCAGG
CCGCCAGGGATCTTCGCTTCTTCGTCGGGTCCGCCCTCGCCGCCTTTGCT
AGCCACGTCGCCTGGGCAAGACTTGTGGCAGAGCAGGCGGGAACGACGCT
CCGGCGGATCGCGCCCCTCGCCTGCGACTCCGGCTGGGCCGCTGCCCCGC
CCCTCCGCGTCGACGCCGCGCTTGACGGTGACTACGGCGGCGACGGCGGA
AGCGGCGGGCTAACGGCGACCGTTCAGCTTTTCGATGCTGACTTGCCTAC
GATCGTCCCACCGCGTGCGCCATCGCTGCGCCTGACCGTGCTTCTCCGCG
GAGACTTACAGGCGCTGGACCGGCTGGCCGGGCTTGTCGATCGCAGGATG
AGTGGCGGCGACCGCGGCGGCGGCTGCAGCGGCGGCGGAAGGATTGGCGA
CGTCAGCGGCTGCGGCGGCTGCGGCGGCGGCGGCGGCAGCGGCGGCAGGA
TTGGCGGCAGAATTGGCGGCAGAATTGGCGGAGACGGCGAAGGTGATGGC
GGCAGCGAAGACGGCGGCGCCGGTGGCGGGGCGCTGCCTGGAGCGGCCCT
CGCCGCGGTCACGGCATGCAGGTCGCAGTGGTCCCGGATGCGGCCCGGAA
CACTGCAGGTCGCCATCCGGCTGTCCACACCCGCGCCCCTCTGCGTCGCC
TGGGTACGGCACAACCTCGGTGACGCTTCGGCAACGCAGGCTAAGTCGCC
GGGCCGCCGCGGCGCCGCGAAGCACCCGCGCAGGAACGCGCCACCTACTT
CCCGGCCCACAGCGGCGGCGGATCTTTGTTCGGGGGCGAACGCTTTCGGC
AGCGGCGACTCCGGTGATGGGGGCGACATCGGCGATGGGGCCAGCGACAG
CCCCGATGGCGGTGGCGGCGGCGGCGTGGACGCCGGCAGAGAGGCGGTAG
TGCTAGCGGCGGCAGGAATGGACCACCTGATTGGCCTAAACTTCTCGTTT
GGGGTAGATCACGGCATTGCAGCGTCGCCGAAGGGCGTGGCGTCGGCGAC
GACGGAGGTTTCG
back to top