mRNA_P-wetherbeei_contig7892.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7892.2.1
Unique NamemRNA_P-wetherbeei_contig7892.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Match: A0A1G8C0Q7_9RHOO (30S ribosomal protein S6 n=1 Tax=Propionivibrio dicarboxylicus TaxID=83767 RepID=A0A1G8C0Q7_9RHOO)

HSP 1 Score: 202 bits (515), Expect = 4.170e-65
Identity = 95/117 (81.20%), Postives = 105/117 (89.74%), Query Frame = 1
Query:    1 MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYPIAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPSPMMKEEKSKSLMGEQRG 351
            MRHYE+VFIVHPDQSEQVP MVERYKALV +RNG +HRLEDWGRRQ+ YPI K+HKAHYVLMNIECDGETLAELEH FKFNDA+LRHL +KM +A TTPSPMMKEEKSKS++  Q G
Sbjct:    1 MRHYEIVFIVHPDQSEQVPAMVERYKALVTSRNGQIHRLEDWGRRQLAYPIQKLHKAHYVLMNIECDGETLAELEHGFKFNDAILRHLTIKMKRAITTPSPMMKEEKSKSMLPTQEG 117          
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Match: A0A6L5JV00_RHOTE (30S ribosomal protein S6 n=4 Tax=Rhodocyclus TaxID=1064 RepID=A0A6L5JV00_RHOTE)

HSP 1 Score: 202 bits (514), Expect = 6.520e-65
Identity = 95/112 (84.82%), Postives = 104/112 (92.86%), Query Frame = 1
Query:    1 MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYPIAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPSPMMKEEKSKSLM 336
            MRHYE+VFIVHPDQSEQVP MVERY+ALVA RNGV+HRLEDWGRRQ+ YPI K+HKAHYVLMNIECDGETLAELEHAFKFNDAVLRHL +K  KA TTPSPMMKEEK++SL+
Sbjct:    1 MRHYEIVFIVHPDQSEQVPAMVERYRALVATRNGVIHRLEDWGRRQLAYPIQKLHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLTIKTKKAVTTPSPMMKEEKARSLL 112          
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Match: A0A1J5RY63_9ZZZZ (30S ribosomal protein S6 n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5RY63_9ZZZZ)

HSP 1 Score: 202 bits (514), Expect = 6.520e-65
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYPIAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPSPMMKEEKSKSL 333
            MRHYE+VFIVHPDQSEQVP MVERYKALVA RNG +HRLEDWGRRQM YPI K+HKAHYVLMNIECDGETLAELEHAFKFNDAVLRHL VKM  A TTPSPMMKEEK++SL
Sbjct:    1 MRHYEIVFIVHPDQSEQVPAMVERYKALVATRNGAIHRLEDWGRRQMAYPIQKVHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLTVKMKHAVTTPSPMMKEEKARSL 111          
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Match: N6YX75_THAL4 (30S ribosomal protein S6 n=21 Tax=Betaproteobacteria TaxID=28216 RepID=N6YX75_THAL4)

HSP 1 Score: 201 bits (512), Expect = 1.190e-64
Identity = 96/111 (86.49%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYPIAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPSPMMKEEKSKSL 333
            MRHYE+VFIVHPDQSEQVP MVERYK LV  RNG +HRLEDWGRRQM YPI K+HKAHYVLMNIECDGETLAELEHAFKFNDAVLRHL +KM KA TTPSPMMKEEKS+SL
Sbjct:    1 MRHYEIVFIVHPDQSEQVPAMVERYKTLVTGRNGQIHRLEDWGRRQMAYPIQKVHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLTIKMKKAVTTPSPMMKEEKSRSL 111          
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Match: A0A5C7K649_9RHOO (30S ribosomal protein S6 n=2 Tax=Rhodocyclaceae TaxID=75787 RepID=A0A5C7K649_9RHOO)

HSP 1 Score: 200 bits (509), Expect = 3.210e-64
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 1
Query:    1 MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYPIAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPSPMMKEEKSKSLM 336
            MRHYEV FIVHPDQSEQVP MVERYK+LV +RNG++HRLEDWGRRQ+ YP+ K+HKAHYVLMNIECDGETLAELEHAFKFNDAVLRHL VKM  A T+PSPMMKEEKSKSLM
Sbjct:    1 MRHYEVCFIVHPDQSEQVPAMVERYKSLVTSRNGIIHRLEDWGRRQLAYPLQKIHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLTVKMKAAITSPSPMMKEEKSKSLM 112          
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Match: A0A2T4IC86_9RHOO (30S ribosomal protein S6 n=6 Tax=Rhodocyclales TaxID=206389 RepID=A0A2T4IC86_9RHOO)

HSP 1 Score: 200 bits (509), Expect = 3.530e-64
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYPIAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPSPMMKEEKSKSL 333
            MRHYEVVFIVHPDQSEQVP M++RYKA+V AR G +HRLEDWGRRQM YPI K+HKAHYVLMNIECDGE LAELEHAFKFNDAVLRHLVVKM KA TTPSPMMKEEKS+SL
Sbjct:    1 MRHYEVVFIVHPDQSEQVPAMIDRYKAIVTAREGQIHRLEDWGRRQMAYPIQKVHKAHYVLMNIECDGEALAELEHAFKFNDAVLRHLVVKMKKAVTTPSPMMKEEKSRSL 111          
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Match: A0A5C9BPF7_9RHOO (30S ribosomal protein S6 n=3 Tax=Rhodocyclales TaxID=206389 RepID=A0A5C9BPF7_9RHOO)

HSP 1 Score: 200 bits (508), Expect = 4.700e-64
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 1
Query:    1 MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYPIAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPSPMMKEEKSKSLM 336
            MRHYE+ FIVHPDQSEQVPGMVERY+A+VAA+NG +HRLEDWGRRQ+ YPI K+HKAHYVLMNIECDGETL ELEH+FKFNDAVLRHL VKM  A TTPSPMMKEEKSKS+M
Sbjct:    1 MRHYEICFIVHPDQSEQVPGMVERYRAIVAAKNGTIHRLEDWGRRQLAYPIQKIHKAHYVLMNIECDGETLNELEHSFKFNDAVLRHLTVKMKAAVTTPSPMMKEEKSKSMM 112          
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Match: A0A1F4FEY4_9PROT (30S ribosomal protein S6 n=5 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FEY4_9PROT)

HSP 1 Score: 200 bits (509), Expect = 5.220e-64
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 1
Query:    1 MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYPIAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPSPMMKEEKSKSLM 336
            MRHYE+VFIVHPDQSEQVP MVERYK ++A R+G +HRLEDWGRRQ+TYPI KMHKAHYVLMNIECD ETL ELEH+FKFNDAVLRHLVV+M KA TTPSPMMKEEKSKSLM
Sbjct:    1 MRHYEIVFIVHPDQSEQVPAMVERYKGVIAQRSGQVHRLEDWGRRQLTYPIQKMHKAHYVLMNIECDNETLGELEHSFKFNDAVLRHLVVRMPKAVTTPSPMMKEEKSKSLM 112          
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Match: A0A177R3P9_9PROT (30S ribosomal protein S6 n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177R3P9_9PROT)

HSP 1 Score: 199 bits (507), Expect = 8.390e-64
Identity = 97/134 (72.39%), Postives = 112/134 (83.58%), Query Frame = 1
Query:    1 MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYPIAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPSPMMKEEKSKSLMGEQRGERPXXXXXXXPQAQAQA 402
            MRHYE+VFIVHPDQSEQVP MVERYK  +A RNG +HRLEDWGRRQ+ YP+AK+HKAHYVLMNIECD ETL ELEH+FKF+DAVLRHL+++M KAHT+PSPMMKEEKSKSLM  + G RP       P+A+  A
Sbjct:    1 MRHYEIVFIVHPDQSEQVPQMVERYKGQIAQRNGTVHRLEDWGRRQLAYPLAKVHKAHYVLMNIECDNETLGELEHSFKFSDAVLRHLIIQMPKAHTSPSPMMKEEKSKSLMEGREG-RPAEAPAEPPRAERPA 133          
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Match: A0A518UAH4_9PROT (30S ribosomal protein S6 n=2 Tax=Denitratisoma TaxID=311181 RepID=A0A518UAH4_9PROT)

HSP 1 Score: 198 bits (504), Expect = 1.740e-63
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYPIAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPSPMMKEEKSKSL 333
            MRHYE+VFIVHPDQSEQVP M+ERY+ LV  RNG +HRLEDWGRRQM YPI K+HKAHYVLMNIECDGETLAELE+AFKFNDAVLRHL +KMDKA T PSPMMKEEKS+SL
Sbjct:    1 MRHYEIVFIVHPDQSEQVPAMIERYQTLVTGRNGAIHRLEDWGRRQMAYPIQKVHKAHYVLMNIECDGETLAELENAFKFNDAVLRHLTIKMDKAVTAPSPMMKEEKSRSL 111          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7892.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1G8C0Q7_9RHOO4.170e-6581.2030S ribosomal protein S6 n=1 Tax=Propionivibrio di... [more]
A0A6L5JV00_RHOTE6.520e-6584.8230S ribosomal protein S6 n=4 Tax=Rhodocyclus TaxID... [more]
A0A1J5RY63_9ZZZZ6.520e-6587.3930S ribosomal protein S6 n=1 Tax=mine drainage met... [more]
N6YX75_THAL41.190e-6486.4930S ribosomal protein S6 n=21 Tax=Betaproteobacter... [more]
A0A5C7K649_9RHOO3.210e-6484.8230S ribosomal protein S6 n=2 Tax=Rhodocyclaceae Ta... [more]
A0A2T4IC86_9RHOO3.530e-6486.4930S ribosomal protein S6 n=6 Tax=Rhodocyclales Tax... [more]
A0A5C9BPF7_9RHOO4.700e-6483.9330S ribosomal protein S6 n=3 Tax=Rhodocyclales Tax... [more]
A0A1F4FEY4_9PROT5.220e-6484.8230S ribosomal protein S6 n=5 Tax=unclassified Beta... [more]
A0A177R3P9_9PROT8.390e-6472.3930S ribosomal protein S6 n=1 Tax=Betaproteobacteri... [more]
A0A518UAH4_9PROT1.740e-6383.7830S ribosomal protein S6 n=2 Tax=Denitratisoma Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7892contigP-wetherbeei_contig7892:454..858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123367.C666_17150
Preferred namerpsF
PFAMsRibosomal_S6
Model size405
Max annot lvl206389|Rhodocyclales
KEGG koko:K02990
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.96e-65
EggNOG OGsCOG0360@1|root,COG0360@2|Bacteria,1RH82@1224|Proteobacteria,2VR79@28216|Betaproteobacteria,2KWGN@206389|Rhodocyclales
DescriptionBinds together with S18 to 16S ribosomal RNA
Cds size405
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187007.1963317-CDS-P-wetherbeei_contig7892:453..8581683187007.1963317-CDS-P-wetherbeei_contig7892:453..858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7892 454..858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7892.2.1prot_P-wetherbeei_contig7892.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7892 454..858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7892.2.1

>prot_P-wetherbeei_contig7892.2.1 ID=prot_P-wetherbeei_contig7892.2.1|Name=mRNA_P-wetherbeei_contig7892.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MRHYEVVFIVHPDQSEQVPGMVERYKALVAARNGVMHRLEDWGRRQMTYP
IAKMHKAHYVLMNIECDGETLAELEHAFKFNDAVLRHLVVKMDKAHTTPS
PMMKEEKSKSLMGEQRGERPADKPAEAPQAQAQA*
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mRNA from alignment at P-wetherbeei_contig7892:454..858-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7892.2.1 ID=mRNA_P-wetherbeei_contig7892.2.1|Name=mRNA_P-wetherbeei_contig7892.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig7892:454..858- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACATTACGAAGTGGTATTCATCGTCCATCCCGACCAGAGCGAACA GGTCCCGGGCATGGTCGAGCGCTACAAGGCGCTGGTGGCCGCCCGCAACG GGGTGATGCACCGCCTCGAAGACTGGGGCCGCCGCCAGATGACCTACCCG ATCGCCAAGATGCACAAGGCGCATTACGTGCTCATGAACATCGAGTGCGA CGGCGAGACGCTGGCCGAACTCGAGCACGCCTTCAAGTTCAACGACGCAG TGCTGCGCCACCTGGTGGTCAAGATGGACAAGGCACACACGACGCCCTCC CCGATGATGAAGGAGGAGAAGTCCAAGTCGCTGATGGGCGAGCAGCGTGG CGAGCGTCCGGCCGACAAGCCGGCCGAGGCGCCGCAGGCCCAGGCCCAGG CCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7892:454..858-

>mRNA_P-wetherbeei_contig7892.2.1 ID=mRNA_P-wetherbeei_contig7892.2.1|Name=mRNA_P-wetherbeei_contig7892.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig7892:454..858- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACATTACGAAGTGGTATTCATCGTCCATCCCGACCAGAGCGAACA
GGTCCCGGGCATGGTCGAGCGCTACAAGGCGCTGGTGGCCGCCCGCAACG
GGGTGATGCACCGCCTCGAAGACTGGGGCCGCCGCCAGATGACCTACCCG
ATCGCCAAGATGCACAAGGCGCATTACGTGCTCATGAACATCGAGTGCGA
CGGCGAGACGCTGGCCGAACTCGAGCACGCCTTCAAGTTCAACGACGCAG
TGCTGCGCCACCTGGTGGTCAAGATGGACAAGGCACACACGACGCCCTCC
CCGATGATGAAGGAGGAGAAGTCCAAGTCGCTGATGGGCGAGCAGCGTGG
CGAGCGTCCGGCCGACAAGCCGGCCGAGGCGCCGCAGGCCCAGGCCCAGG
CCTGA
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