mRNA_P-wetherbeei_contig7889.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7889.1.1
Unique NamemRNA_P-wetherbeei_contig7889.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig7889.1.1 vs. uniprot
Match: A0A6H5L2U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.070e-10
Identity = 55/156 (35.26%), Postives = 72/156 (46.15%), Query Frame = 1 
Query:  232 CIQMLPPSQRQELRRRYGDLPSESLGVLSRYRKLSFWLPAALAIPGG--------------------AAGERRRMAMLASRSLRARLCELAEIVISSEAATAPTARRREIGARRLFE---------LSGYRRAAFLSTACSSIALLALIFAGLCVW 612
            C+  L   Q+  L RR G+ P      L+ YRKLSFWLP+ALA+                       A    RR AM  +RSLR RL E  E+V+ SEA T  T+ RRE G R+LF                  FLS+  +S+ L+  IFA +  +
Sbjct:   88 CLARLSTRQKISLIRRCGEPPKVGRSSLNSYRKLSFWLPSALALADVGXXXXXXXXXXXXXXXXXXVAXARERRAAMFRNRSLRQRLSEACEVVMESEAVTGSTSSRRERGLRKLFAPPPSGLXXXXXXXHGQGFLSSTRNSVILIVGIFAAMVAY 243
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BLAST of mRNA_P-wetherbeei_contig7889.1.1 vs. uniprot
Match: D8LNG9_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.950e-7
Identity = 53/159 (33.33%), Postives = 71/159 (44.65%), Query Frame = 1 
Query:  232 CIQMLPPSQRQELRRRYGDLPSESLGVLSRYRKLSFWLPAALAIP--GGAAGERRRM-------------------AMLASRSLRARLCELAEIVISSEAATAPTARRREIGARRLFE-----------LSGYRRAAFLSTACSSIALLALIFAGLCVW 612
            C+  L   Q+  L RR G+ P      L+ YRKLS+WLP+ALA+   GG                           AM  +RSLR RL E  E+V+ SEA T  T+ RRE G R+LF                    FLS+  +S+ L+  IFA +  +
Sbjct:  313 CLARLSTRQKISLIRRCGEPPKVGRSSLNSYRKLSYWLPSALALADAGGXXXXXXXXXXXXXXXXXXXXXXXXXXAAMFRNRSLRQRLSEACEVVMESEAVTGSTSSRRERGLRKLFAPPPSGLXXXXXXXXXHGQGFLSSTRNSVILIVGIFAAMVAY 471
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7889.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2U3_9PHAE1.070e-1035.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNG9_ECTSI1.950e-733.33RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7889contigP-wetherbeei_contig7889:538..1774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNG9
Preferred nameBFAR
PFAMsSAM_1,zf-C3HC4,zf-C3HC4_2,zf-C3HC4_4
Model size1050
Max annot lvl2759|Eukaryota
KEGG koko:K15684
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0002020,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0005887,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010498,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0016020,GO:0016021,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0023051,GO:0023057,GO:0030163,GO:0030176,GO:0030674,GO:0031224,GO:0031226,GO:0031227,GO:0031984,GO:0032446,GO:0035821,GO:0036211,GO:0042175,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044003,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051603,GO:0051701,GO:0051704,GO:0051817,GO:0051865,GO:0052008,GO:0052043,GO:0052111,GO:0052185,GO:0052188,GO:0052368,GO:0060090,GO:0060548,GO:0061630,GO:0061659,GO:0065007,GO:0070534,GO:0070647,GO:0070936,GO:0071704,GO:0071944,GO:0075342,GO:0080134,GO:0080135,GO:0089720,GO:0098827,GO:0140096,GO:1900101,GO:1900102,GO:1901564,GO:1901565,GO:1901575,GO:1903573,GO:1903894,GO:1903895,GO:1905897
Exons2
Evalue2.06e-07
EggNOG OGsCOG2802@1|root,KOG4159@2759|Eukaryota
Descriptionhistone H2A-K13 ubiquitination
Cds size420
COG categoryI
BRITEko00000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.7688227-UTR-P-wetherbeei_contig7889:537..7771683187006.7688227-UTR-P-wetherbeei_contig7889:537..777Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7889 538..777 +
1683187006.8033204-UTR-P-wetherbeei_contig7889:1384..17741683187006.8033204-UTR-P-wetherbeei_contig7889:1384..1774Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7889 1385..1774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187006.7817914-CDS-P-wetherbeei_contig7889:777..8721683187006.7817914-CDS-P-wetherbeei_contig7889:777..872Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7889 778..872 +
1683187006.7928555-CDS-P-wetherbeei_contig7889:1059..13841683187006.7928555-CDS-P-wetherbeei_contig7889:1059..1384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7889 1060..1384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7889.1.1prot_P-wetherbeei_contig7889.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7889 778..1384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7889.1.1

>prot_P-wetherbeei_contig7889.1.1 ID=prot_P-wetherbeei_contig7889.1.1|Name=mRNA_P-wetherbeei_contig7889.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MLPPSQRQELRRRYGDLPSESLGVLSRYRKLSFWLPAALAIPGGAAGERR
RMAMLASRSLRARLCELAEIVISSEAATAPTARRREIGARRLFELSGYRR
AAFLSTACSSIALLALIFAGLCVWTGWGESVGVSGRFGL*
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mRNA from alignment at P-wetherbeei_contig7889:538..1774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7889.1.1 ID=mRNA_P-wetherbeei_contig7889.1.1|Name=mRNA_P-wetherbeei_contig7889.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1237bp|location=Sequence derived from alignment at P-wetherbeei_contig7889:538..1774+ (Phaeothamnion wetherbeei SAG_119_79)
TATGGAGGTACGGAGCCCTTTGGGCCTGAAATGTTCCTGAAGTTTGGGCG
GATAAGGTTTGCGGTATAGGTGCGCGGTTTTGGGGCATTTGGTTGTACAA
GATTACATGATAACAAGAAATATTCGTTGTGGAAAAGCTGGAGGCAGCTA
CAGCTTGAATTGTGTTCAAATGACCCATTCCTGTCCCATACCTGGGTCGC
GGGGGGCCTGATGGTCTGATGATTCCTCAGGTGCATTCAAATGCTGCCGC
CCAGCCAGCGGCAGGAGCTTCGACGGCGCTACGGTGACCTTCCATCGGAG
TCGCTCGGCGTTCTTTCCCGCTACCGCAAGCTGAGGTAAATGGGAGGGAA
AAGAGACCATTCCGCTTAGCCTCAGTCAGTTTTCCAGCTCCGCAAACCTA
GTTTGCGGAGTCCGACTCTCTTTAAGGCGCCCCAACACGTCAAAAAGCGG
CTTGTTGGGTGGCAGGCAGCTCACGAAGCAGCCTCTTGCCGCCGTTCACC
CTTCTCCTCCTTCCGTTCGCAGCTTCTGGCTTCCAGCGGCTCTGGCGATA
CCGGGCGGTGCCGCCGGCGAGCGACGCCGCATGGCGATGCTCGCCAGTCG
CAGCCTCCGCGCGCGCCTCTGTGAATTAGCTGAAATCGTCATCAGCAGCG
AGGCGGCCACGGCTCCCACGGCACGGCGCCGGGAGATCGGGGCCCGCCGC
CTCTTCGAACTGTCTGGCTACCGCCGGGCGGCATTCCTGAGCACGGCCTG
CTCCAGCATCGCGCTGCTGGCGCTAATTTTTGCCGGGCTGTGCGTGTGGA
CTGGCTGGGGGGAGTCGGTTGGGGTGTCAGGCCGTTTCGGCCTGTGAAGG
AAGGACGACGACGCATCGGACGGGGAAGCCTTGTCGCTTAGGGCTTGGAC
ATTGGAAAGGGGCACAGGCGGCAAGAGAGGATGCCATCTTTCTGCAGGGC
GATGTGAGCACGGTGTGGACATGCTCTCGTTCGTGTCAGCCTCTCAGCGC
AACTGCGGTAGCCCAGCGGCCGTGGCGCAGCGCCATGTTTGTAAGTTTGC
CGGCGGAAAGCGAGGCAGAGAACCGGAACGAAATGGATTTAACGCTGCCT
TTGTACAGCCAAGCTTAAAGAAAAAGAAGGAAAAAGAAATCGGAATCAAC
CCGCAGTATCTCCAGCGGGTCATAACTTCTTCGAGGAGAACGACAGACGG
CGTGCATGCGAAAACGTAATGTAAGGATCGATACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7889:538..1774+

>mRNA_P-wetherbeei_contig7889.1.1 ID=mRNA_P-wetherbeei_contig7889.1.1|Name=mRNA_P-wetherbeei_contig7889.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig7889:538..1774+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCCGCCCAGCCAGCGGCAGGAGCTTCGACGGCGCTACGGTGACCT
TCCATCGGAGTCGCTCGGCGTTCTTTCCCGCTACCGCAAGCTGAGCTTCT
GGCTTCCAGCGGCTCTGGCGATACCGGGCGGTGCCGCCGGCGAGCGACGC
CGCATGGCGATGCTCGCCAGTCGCAGCCTCCGCGCGCGCCTCTGTGAATT
AGCTGAAATCGTCATCAGCAGCGAGGCGGCCACGGCTCCCACGGCACGGC
GCCGGGAGATCGGGGCCCGCCGCCTCTTCGAACTGTCTGGCTACCGCCGG
GCGGCATTCCTGAGCACGGCCTGCTCCAGCATCGCGCTGCTGGCGCTAAT
TTTTGCCGGGCTGTGCGTGTGGACTGGCTGGGGGGAGTCGGTTGGGGTGT
CAGGCCGTTTCGGCCTGTGA
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