mRNA_P-wetherbeei_contig7887.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: UPI0006943B7A (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Imhoffiella purpurea TaxID=1249627 RepID=UPI0006943B7A) HSP 1 Score: 83.2 bits (204), Expect = 2.850e-18 Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 34 FRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLV 309
FR +D P Q + FLF+A+ +E ++ + G VSSSTSRN+A LSK+HRL KPGLDL+E DP D RYK V L KG L+
Sbjct: 24 FRTIDPDMPVQQIATFLFVAT--REGSSVKAISAGTGQVSSSTSRNIAALSKYHRLNKPGLDLIEAREDPADRRYKTVHLTPKGHMFAENLI 113
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: UPI001032FB1B (MarR family winged helix-turn-helix transcriptional regulator n=2 Tax=Pseudomonas TaxID=286 RepID=UPI001032FB1B) HSP 1 Score: 76.6 bits (187), Expect = 6.610e-16 Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 4 LKSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNLI 318
L + L FRD D QT Q F IA A + I M++L +++G+ +S SRNVA LS+ HRL K G+DLV DP + R K VKL AKG++L L LI
Sbjct: 6 LNVIEEVLKRFRDFDQEMQMQTAQTF--IAVALQPGITMKELSERVGISQASCSRNVAALSRVHRLNKAGMDLVVAAEDPMERRRKVVKLTAKGQRLAEALTKLI 108
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: A0A435WT42_9HYPH (MarR family transcriptional regulator n=3 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A435WT42_9HYPH) HSP 1 Score: 76.3 bits (186), Expect = 1.090e-15 Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 1
Query: 1 TLKSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNLIG 321
T + + + F +D Q + FL + K D+ MR+L+ G+ SSS SRNV+ LSK HR G+PG DLV TY D D R KRVK KG ++ L++++G
Sbjct: 13 TARRLLSFIEEFGKLDAEMQIQQIAVFLHVMG--KPDLTMRELETATGLSSSSVSRNVSALSKTHRKGQPGHDLVTTYEDAMDRRIKRVKPTPKGTKVFNTLISILG 117
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: UPI00110DB7CD (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Ruegeria sediminis TaxID=2583820 RepID=UPI00110DB7CD) HSP 1 Score: 75.5 bits (184), Expect = 2.190e-15 Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 1 TLKSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLV 309
+ +S+ + RD+D P Q Q +F+ +A E DL+ + M+SS+ SRN+A LSK HRLGKPGL+L+E +P D R K + L KG+QL ++L+
Sbjct: 14 SFRSIFAVCSKLRDIDENMPLQ--QALVFLWAALNEGKTQVDLRRDLDMLSSTASRNLAALSKVHRLGKPGLNLIEWVENPEDRRAKLIYLTVKGRQLASKLL 114
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: UPI001AE14A04 (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Ruegeria sp. HKCCSP346 TaxID=2794830 RepID=UPI001AE14A04) HSP 1 Score: 75.9 bits (185), Expect = 2.660e-15 Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 34 FRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNLI 318
FR++D+ P Q + C +++A+ E ++L+D +GM SS+ SRN+ L+ +HRLGKPGL LVE D D R K V+L KG+ L ++N +
Sbjct: 24 FREVDSEMPVQQMLCLVWVAN--NEGKSQKELRDSLGMASSTASRNLNALADYHRLGKPGLGLVEMADDFRDRRQKVVRLTPKGRTLMNEVLNYV 116
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: A0A502T8E3_9HYPH (MarR family transcriptional regulator n=2 Tax=Mesorhizobium TaxID=68287 RepID=A0A502T8E3_9HYPH) HSP 1 Score: 74.7 bits (182), Expect = 3.670e-15 Identity = 46/103 (44.66%), Postives = 58/103 (56.31%), Query Frame = 1
Query: 13 MAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNLIG 321
M L F +D Q + FL I +K D+ MR+L+ G+ SSS SRNV+ LSK HR G+PG DLV TY D D R KRVK KG ++ L +IG
Sbjct: 10 MLGLLDEFAKLDPEMQIQQISVFLRIV--EKPDLSMRELEQLTGLSSSSVSRNVSALSKVHRKGQPGHDLVATYEDTQDRRIKRVKPTPKGMKVFNTLNMVIG 110
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: A0A1J4QCJ4_9GAMM (Uncharacterized protein n=1 Tax=Oceanisphaera psychrotolerans TaxID=1414654 RepID=A0A1J4QCJ4_9GAMM) HSP 1 Score: 74.3 bits (181), Expect = 5.890e-15 Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 4 LKSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNL 315
L+ +A ++ R+ + Q FL IA + I +++ + G SS SRN+A LSK HRLGKPGLDLV DP + R K ++L +KGK+L ARL ++
Sbjct: 13 LRRLAQSIGEIREASSDLTLQAAHMFLLIAV--QPGITSKEIIRETGFSQSSCSRNLAMLSKIHRLGKPGLDLVTAEEDPAERRRKALRLTSKGKELAARLADI 114
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: UPI000691998B (MarR family winged helix-turn-helix transcriptional regulator n=1 Tax=Methylobacterium sp. ZNC0032 TaxID=1339244 RepID=UPI000691998B) HSP 1 Score: 74.3 bits (181), Expect = 9.870e-15 Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 1
Query: 4 LKSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLV 309
+ ++ L V RD + P QT Q L +A + + M+D+ G+ SS SRN+ L K HRLGKPG+DLVE DP+D R K V L G++L +L+
Sbjct: 7 IAALIKVLQVLRDKEAEFPIQTAQTLLCVAL--QPGMTMQDIAKATGLSQSSASRNIQSLGKWHRLGKPGMDLVEAVEDPHDTRRKIVFLTKDGRELVGKLL 106
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: A0A2G8RD03_9RHOB (Uncharacterized protein n=1 Tax=Puniceibacterium antarcticum TaxID=1206336 RepID=A0A2G8RD03_9RHOB) HSP 1 Score: 71.2 bits (173), Expect = 9.230e-14 Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 34 FRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLV 309
FR+ D P Q Q +F A E RD++D +G+ SS++SRN+A LS HRLGKPGL L+E D R K ++L+ KG+ L RL+
Sbjct: 23 FREQDPDAPIQ--QALIFCWVALNEGRSQRDMRDALGIASSTSSRNLAALSSVHRLGKPGLGLIEWIESGEDRRVKMLQLSQKGRTLVHRLL 112
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Match: A0A0L6CQL8_9RHOB (Uncharacterized protein n=1 Tax=Roseovarius tolerans TaxID=74031 RepID=A0A0L6CQL8_9RHOB) HSP 1 Score: 70.9 bits (172), Expect = 1.340e-13 Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 7 KSMAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTSRNVAYLSKHHRLGKPGLDLVETYYDPNDGRYKRVKLNAKGKQLKARLVNLIG 321
+++ + R++D P CF +IA E +L+ + M SS++SRN+A LSK HRLGKPGLD++E +P D R K + L+ +GK L ++++ G
Sbjct: 14 RAIFQVMQALRELDADMPMNQAVCFAWIAL--NEGRTQVELRQDLDMASSTSSRNLAALSKVHRLGKPGLDMIEWVENPKDRRAKLLYLSNEGKHLVSKMLARFG 116 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7887.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7887.2.1 >prot_P-wetherbeei_contig7887.2.1 ID=prot_P-wetherbeei_contig7887.2.1|Name=mRNA_P-wetherbeei_contig7887.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp MAHALAVFRDMDTLCPAQTVQCFLFIASAQKEDIHMRDLQDQMGMVSSSTback to top mRNA from alignment at P-wetherbeei_contig7887:1986..2309+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7887.2.1 ID=mRNA_P-wetherbeei_contig7887.2.1|Name=mRNA_P-wetherbeei_contig7887.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig7887:1986..2309+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7887:1986..2309+ >mRNA_P-wetherbeei_contig7887.2.1 ID=mRNA_P-wetherbeei_contig7887.2.1|Name=mRNA_P-wetherbeei_contig7887.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig7887:1986..2309+ (Phaeothamnion wetherbeei SAG_119_79)back to top |