mRNA_P-wetherbeei_contig787.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig787.3.1
Unique NamemRNA_P-wetherbeei_contig787.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig787.3.1 vs. uniprot
Match: A0A0P1B5N4_PLAHL (Ribonuclease H-like domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B5N4_PLAHL)

HSP 1 Score: 62.4 bits (150), Expect = 5.030e-10
Identity = 40/103 (38.83%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:    4 FPGLTSAAVSVHGHSASAAQIERDFGIAGLLVVPWRSLMDPAFADIVLFPRANSEHIPKLDTIPELAS--YLGGAGHHECVSARRRTKKAVHGTLDMSEDEEE 306
            FP L + A  + G+  SAA IER+FGIAG+L+ P R+  D   A+++LF   N EHIP  D IP + S      AG  +  S +R T     G+  ++E ++E
Sbjct:    7 FPHLAAVARFIFGNPTSAAGIEREFGIAGVLLNPRRTNFDTFVAEMILFLNINGEHIP-WDDIPLIDSKEVQQTAGRRQKFSPKRYTTATPAGSSTVNEADDE 108
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BLAST of mRNA_P-wetherbeei_contig787.3.1 vs. uniprot
Match: A0A0P1AKL2_PLAHL (Ribonuclease H-like domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKL2_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 6.940e-10
Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:    4 FPGLTSAAVSVHGHSASAAQIERDFGIAGLLVVPWRSLMDPAFADIVLFPRANSEHIPKLDTIPELAS--YLGGAGHHECVSARRRTKKAVHGTLDMSEDEEE 306
            FP L + A  + G+SASAA IERDF IAG+L+ P R+ +D    +++LF   N EHIP  D IP + S      AG       +R T     G+L ++E ++E
Sbjct:   22 FPHLAAVARCIFGNSASAAGIERDFEIAGVLLNPRRTNLDTFVVEMILFLYINGEHIP-WDDIPLIDSKKVQQTAGGRSKFVPKRYTTATPAGSLTLNEADDE 123
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BLAST of mRNA_P-wetherbeei_contig787.3.1 vs. uniprot
Match: A0A0P1AQK6_PLAHL (Ribonuclease H-like domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQK6_PLAHL)

HSP 1 Score: 58.9 bits (141), Expect = 5.780e-8
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:    4 FPGLTSAAVSVHGHSASAAQIERDFGIAGLLVVPWRSLMDPAFADIVLFPRANSEHIPKLDTIPELAS--YLGGAGHHECVSARRRTKKAVHGTLDMSEDEEE 306
            FP L + A    G+SA  A IERDFGIAG+L+ P R+ +D    +++LF   N EH P  D IP + S      AG     + +R T     G+  ++E+++E
Sbjct:  245 FPRLAAVARYTFGNSALTAGIERDFGIAGVLLNPRRNNLDTFVVEMILFLNINGEHTP-WDDIPLINSKDVQQTAGGRSKFAPKRYTTATPAGSSTLNEEDDE 346
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig787.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0P1B5N4_PLAHL5.030e-1038.83Ribonuclease H-like domain n=1 Tax=Plasmopara hals... [more]
A0A0P1AKL2_PLAHL6.940e-1039.81Ribonuclease H-like domain n=1 Tax=Plasmopara hals... [more]
A0A0P1AQK6_PLAHL5.780e-836.89Ribonuclease H-like domain n=1 Tax=Plasmopara hals... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig787contigP-wetherbeei_contig787:5648..5956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size309
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187005.8817883-CDS-P-wetherbeei_contig787:5647..59561683187005.8817883-CDS-P-wetherbeei_contig787:5647..5956Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig787 5648..5956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig787.3.1prot_P-wetherbeei_contig787.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig787 5648..5956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig787.3.1

>prot_P-wetherbeei_contig787.3.1 ID=prot_P-wetherbeei_contig787.3.1|Name=mRNA_P-wetherbeei_contig787.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MFPGLTSAAVSVHGHSASAAQIERDFGIAGLLVVPWRSLMDPAFADIVLF
PRANSEHIPKLDTIPELASYLGGAGHHECVSARRRTKKAVHGTLDMSEDE
EE*
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mRNA from alignment at P-wetherbeei_contig787:5648..5956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig787.3.1 ID=mRNA_P-wetherbeei_contig787.3.1|Name=mRNA_P-wetherbeei_contig787.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig787:5648..5956+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTCCCGGGCTCACTTCCGCCGCCGTCAGCGTTCACGGGCACTCGGC
GTCTGCGGCCCAAATCGAGCGGGACTTCGGCATTGCCGGACTGCTTGTGG
TGCCGTGGCGGAGCTTGATGGACCCAGCGTTTGCTGACATCGTGCTCTTC
CCTCGGGCGAACAGCGAGCACATTCCGAAGCTGGACACAATTCCGGAGCT
GGCCTCGTACCTCGGTGGCGCGGGCCACCACGAGTGCGTCTCCGCGCGCC
GGCGAACCAAGAAGGCGGTCCACGGGACCTTGGACATGTCCGAGGACGAG
GAGGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig787:5648..5956+

>mRNA_P-wetherbeei_contig787.3.1 ID=mRNA_P-wetherbeei_contig787.3.1|Name=mRNA_P-wetherbeei_contig787.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig787:5648..5956+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTTCCCGGGCTCACTTCCGCCGCCGTCAGCGTTCACGGGCACTCGGC
GTCTGCGGCCCAAATCGAGCGGGACTTCGGCATTGCCGGACTGCTTGTGG
TGCCGTGGCGGAGCTTGATGGACCCAGCGTTTGCTGACATCGTGCTCTTC
CCTCGGGCGAACAGCGAGCACATTCCGAAGCTGGACACAATTCCGGAGCT
GGCCTCGTACCTCGGTGGCGCGGGCCACCACGAGTGCGTCTCCGCGCGCC
GGCGAACCAAGAAGGCGGTCCACGGGACCTTGGACATGTCCGAGGACGAG
GAGGAGTGA
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